Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012659.1 Kokia drynarioides strain JFW-HI SEQ_127670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3728
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.30

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1541 original size:26 final size:26

Alignment explanation


    Indices: 1506--1568  Score: 65
    Period size: 26  Copynumber: 2.4  Consensus size: 26

       1496 CTCATGCAGA

                 *                     
       1506 GACAACTCTGGACATA-TTCACACAGT
          1 GACAATTCTGGACA-AGTTCACACAGT

              *       *        **     
       1532 GATAATTCTGAACAAGTTCTTACAGT
          1 GACAATTCTGGACAAGTTCACACAGT

                       
       1558 GACAATTCTGG
          1 GACAATTCTGG

       1569 GCACAATGCT


Statistics
Matches: 29,  Mismatches: 7, Indels: 2
        0.76            0.18        0.05

Matches are distributed among these distances:
  25    1  0.03
  26   28  0.97

ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29


Consensus pattern (26 bp):   
GACAATTCTGGACAAGTTCACACAGT

Found at i:2365 original size:26 final size:26

Alignment explanation


    Indices: 2330--2392  Score: 67
    Period size: 26  Copynumber: 2.4  Consensus size: 26

       2320 CTCATGCAGA

                 *                      
       2330 GACAACTCTGGACATA-TTCAC-ACAGT
          1 GACAATTCTGGACA-AGTTC-CTACAGT

              *       *               
       2356 GATAATTCTGAACAAGTTCCTACAGT
          1 GACAATTCTGGACAAGTTCCTACAGT

                       
       2382 GACAATTCTGG
          1 GACAATTCTGG

       2393 GCACAATGCT


Statistics
Matches: 30,  Mismatches: 5, Indels: 4
        0.77            0.13        0.10

Matches are distributed among these distances:
  25    2  0.07
  26   28  0.93

ACGTcount: A:0.33, C:0.22, G:0.17, T:0.27


Consensus pattern (26 bp):   
GACAATTCTGGACAAGTTCCTACAGT
Done.