Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012661.1 Kokia drynarioides strain JFW-HI SEQ_127672, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4003
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:2436 original size:43 final size:42

Alignment explanation


    Indices: 2387--2476  Score: 144
    Period size: 43  Copynumber: 2.1  Consensus size: 42

       2377 TCAAATAAGC

                           *        *                 
       2387 TTATTCAAAGTTGTTTTTTTCTTATTTTTATTTTGACTAAAT
          1 TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT

                      *                                
       2429 TATATTCAAATTTGTTATTTTCTTAATTTTATTTTGACTAAAT
          1 T-TATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT

                 
       2472 TTATT
          1 TTATT

       2477 TATTTTAACT


Statistics
Matches: 44,  Mismatches: 3, Indels: 2
        0.90            0.06        0.04

Matches are distributed among these distances:
  42    5  0.11
  43   39  0.89

ACGTcount: A:0.27, C:0.07, G:0.06, T:0.61


Consensus pattern (42 bp):   
TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
Done.