genome.fa.s12664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012664.1 Kokia drynarioides strain JFW-HI SEQ_127675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25446

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568--687	57	2.1	56	83	8	147	35	12	18	33	1.88
578--1147	60	9.5	59	75	11	337	27	17	16	38	1.91
682--1147	60	7.8	58	79	10	370	27	17	15	38	1.91
2384--2461	24	3.2	24	71	15	63	55	0	5	39	1.22
3522--3787	30	8.9	29	73	13	175	37	26	1	34	1.67
3654--3967	117	2.7	117	77	6	314	33	25	4	36	1.77
3595--3967	59	6.3	59	78	7	291	32	26	4	36	1.77
3821--3912	30	3.1	30	67	14	82	30	23	6	39	1.80
3828--3922	29	3.2	29	67	14	86	33	23	6	36	1.80
5707--5743	18	2.1	18	100	0	74	29	21	27	21	1.99
9518--9550	12	2.8	12	86	13	50	84	0	15	0	0.61
10850--10962	49	2.3	49	87	3	149	38	21	29	10	1.87
11022--11174	50	3.1	50	72	14	143	39	18	26	15	1.90
10898--11183	100	2.9	100	78	6	298	39	17	26	16	1.91
11538--11682	39	3.7	40	79	8	138	25	29	20	24	1.99
11790--12567	206	3.8	205	88	1	1066	35	18	22	23	1.96
12919--13014	34	2.9	34	76	4	88	35	6	5	53	1.49
12919--13014	17	5.7	17	74	6	79	35	6	5	53	1.49
12913--13012	51	2.0	50	84	2	128	34	6	5	55	1.46
13735--13782	19	2.6	17	87	9	60	52	2	2	43	1.24
14870--15108	30	8.1	29	67	21	90	35	25	2	35	1.71
14877--15116	59	4.1	58	73	10	168	35	25	2	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15013--15292	59	4.8	58	76	12	218	34	22	4	38	1.75
18718--21500	84	33.1	84	89	3	3938	42	5	4	47	1.46
20964--21102	39	3.4	39	69	21	124	45	3	1	49	1.28
22790--22849	22	2.7	22	68	0	57	46	8	0	45	1.33
24604--25446	84	10.1	84	86	2	1133	47	5	5	41	1.50
24604--25446	251	3.4	252	88	0	1242	47	5	5	41	1.50

Tables:   1

The End!