Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001267.1 Kokia drynarioides strain JFW-HI SEQ_112647, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2687
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:844 original size:23 final size:24

Alignment explanation


    Indices: 766--836  Score: 94
    Period size: 22  Copynumber: 3.1  Consensus size: 24

        756 AATAATCTTA

                              *   * 
        766 CAATTAAACTCTGTTTATCT-TCT
          1 CAATTAAACTCTGTTTATTTATTT

                                *   
        789 -AATTAAACTCTGTTTATTTGTTT
          1 CAATTAAACTCTGTTTATTTATTT

                                    
        812 CAATTAAACT-TGTTTATTTATTT
          1 CAATTAAACTCTGTTTATTTATTT

              
        835 CA
          1 CA

        837 GTCTAACTCT


Statistics
Matches: 43,  Mismatches: 3, Indels: 4
        0.86            0.06        0.08

Matches are distributed among these distances:
  22   18  0.42
  23   16  0.37
  24    9  0.21

ACGTcount: A:0.28, C:0.14, G:0.06, T:0.52


Consensus pattern (24 bp):   
CAATTAAACTCTGTTTATTTATTT
Done.