genome.fa.s12674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012674.1 Kokia drynarioides strain JFW-HI SEQ_127685, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212605

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592--667	9	8.7	9	77	20	81	0	35	0	64	0.94
593--667	4	18.2	4	80	10	80	0	34	0	65	0.93
593--668	17	4.6	17	79	11	79	0	35	0	64	0.94
5548--5581	16	2.1	16	88	0	50	38	0	0	61	0.96
7730--8382	163	4.0	163	92	2	1067	36	16	21	25	1.94
7734--8381	329	2.0	325	92	1	1073	36	16	21	25	1.94
15704--15765	29	2.1	29	84	0	79	61	8	4	25	1.44
23873--23912	18	2.2	18	86	0	53	45	2	7	45	1.45
24041--24089	16	3.2	16	75	16	50	22	0	6	71	1.08
24025--24065	21	2.0	21	95	0	73	19	0	4	75	0.98
30466--30598	70	1.9	68	96	3	248	36	5	17	41	1.72
36453--36478	1	26.0	1	100	0	52	100	0	0	0	0.00
39248--39321	33	2.3	32	84	9	96	71	8	8	12	1.30
40183--40294	55	2.0	55	98	0	215	47	12	15	25	1.80
42398--42422	2	12.5	2	100	0	50	52	0	0	48	1.00
61382--61563	89	2.0	89	100	0	364	29	20	16	32	1.95
64712--64777	33	1.9	35	90	6	109	53	0	4	42	1.21
65116--65186	31	2.3	31	95	0	133	33	2	16	46	1.62
65615--65674	30	2.0	30	90	0	93	28	20	11	40	1.87
71462--71523	26	2.4	26	89	5	90	40	8	8	43	1.64
71476--71525	26	1.9	26	100	0	100	36	12	4	48	1.59
78902--79055	56	2.7	56	83	7	186	52	3	2	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88285--88344	23	2.6	24	79	10	63	30	0	3	66	1.07
88297--88344	24	2.0	25	88	12	73	27	0	2	70	0.98
89181--89241	25	2.2	30	83	13	78	22	8	1	67	1.27
89218--89279	29	2.1	29	82	11	74	29	4	3	62	1.31
89384--89432	17	2.7	18	84	9	55	44	0	2	53	1.12
91121--91197	33	2.3	34	81	4	93	28	7	16	46	1.75
91189--91222	11	3.1	11	86	0	50	38	0	2	58	1.13
95401--95476	37	2.1	37	100	0	152	22	13	21	43	1.86
96093--96148	17	3.3	17	69	18	53	19	35	1	42	1.62
96904--96937	18	2.0	17	88	11	52	32	5	2	58	1.37
103826--103971	74	2.0	74	94	0	256	37	23	10	27	1.89
107677--107709	15	2.3	15	89	5	50	24	0	0	75	0.80
107665--107714	25	2.1	24	88	7	75	24	0	0	76	0.80
108347--108401	27	2.0	27	86	6	76	54	0	1	43	1.10
114217--114254	13	2.7	15	88	12	62	60	0	5	34	1.19
131190--131219	7	4.3	7	100	0	60	46	0	40	13	1.43
142780--142814	3	11.7	3	100	0	70	0	68	0	31	0.90
156622--156655	16	2.1	16	89	10	52	64	17	0	17	1.29
158719--158751	15	2.2	15	89	10	50	54	6	3	36	1.41
163287--163336	20	2.5	20	100	0	100	26	16	32	26	1.96
168397--168428	2	16.0	2	100	0	64	50	0	0	50	1.00
180997--181039	15	2.6	17	82	10	54	44	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180997--181033	18	2.1	18	89	0	56	45	2	0	51	1.15
181221--181291	29	2.4	29	74	4	72	38	2	1	57	1.22
183874--183926	23	2.3	23	100	0	106	30	7	41	20	1.80
189142--189204	29	2.3	27	84	13	76	65	7	0	26	1.20
190784--190825	21	2.0	21	82	13	52	30	0	9	59	1.29
192319--192517	99	2.0	99	99	0	389	31	16	10	41	1.82
193316--193353	20	1.9	20	94	0	67	60	2	10	26	1.43
205119--205161	22	2.0	22	81	9	52	48	2	0	48	1.14
205924--205958	18	1.9	18	88	0	52	22	2	2	71	1.13
206385--206441	23	2.5	22	83	8	62	52	7	3	36	1.46
210146--210189	19	2.2	20	92	8	81	31	0	27	40	1.56

Tables:   1

The End!