genome.fa.s12679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012679.1 Kokia drynarioides strain JFW-HI SEQ_127690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78872

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4702--4740	21	1.9	20	89	5	60	53	5	0	41	1.23
15143--15199	30	2.0	30	83	13	75	43	3	0	52	1.18
18494--18539	14	3.1	15	76	14	51	41	2	0	56	1.11
21157--21209	17	3.1	17	72	0	52	60	3	3	32	1.32
22059--22120	29	2.1	31	81	6	74	30	8	17	43	1.78
23419--23457	13	3.1	13	88	3	53	79	5	15	0	0.90
24904--24950	3	16.0	3	77	4	51	38	0	2	59	1.09
31404--32068	78	8.4	77	73	9	432	27	17	24	30	1.97
31384--32111	40	18.4	39	70	11	358	27	17	25	29	1.97
31404--31985	237	2.5	237	84	2	706	28	17	24	30	1.97
31486--31985	236	2.1	238	84	2	648	28	18	24	29	1.98
31383--32107	39	18.4	40	71	12	301	27	17	25	29	1.97
31607--32102	118	4.2	117	76	11	447	27	19	25	28	1.98
32314--32634	49	6.5	49	70	7	211	20	32	13	33	1.91
32212--32674	247	1.9	247	84	0	629	20	29	14	35	1.92
32453--32822	195	1.9	198	79	6	430	18	29	16	35	1.93
32593--32822	97	2.4	95	75	11	214	18	28	17	35	1.93
33749--33796	25	2.0	25	87	4	71	2	18	0	79	0.84
33749--33796	13	3.9	13	80	20	59	2	18	0	79	0.84
34666--34696	16	2.0	15	93	6	53	0	22	0	77	0.77
39371--39474	30	3.5	29	77	3	109	40	8	18	32	1.81
39361--39475	59	1.9	60	83	1	151	40	9	18	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39390--39507	30	4.0	30	73	16	84	36	9	21	33	1.85
39460--39528	30	2.3	30	90	5	104	28	4	24	42	1.74
45042--45074	17	2.0	17	88	5	50	21	3	3	72	1.11
49591--49709	41	2.8	42	84	2	150	21	13	31	33	1.92
50363--50453	29	3.1	29	80	0	92	21	20	15	41	1.89
52085--52120	17	2.2	16	90	5	54	83	2	5	8	0.89
58176--58229	21	2.6	21	83	13	60	31	5	3	59	1.38
59989--60028	17	2.2	19	86	8	57	30	0	2	67	1.04
60003--60090	19	4.7	19	79	9	85	37	1	2	59	1.18
60183--60226	22	2.0	22	90	0	70	29	2	4	63	1.26
62902--62935	11	3.1	11	86	0	50	26	0	2	70	1.01
62928--62976	25	1.9	26	83	4	64	34	4	2	59	1.28
62917--62977	26	2.3	27	75	11	63	32	3	3	60	1.29
66851--67542	202	3.5	202	93	1	1110	35	14	14	34	1.87
69975--70097	51	2.5	51	75	10	119	25	19	21	34	1.96
73186--73222	15	2.4	16	86	13	51	70	5	0	24	1.08
73534--73593	31	1.9	31	89	0	93	33	13	11	41	1.80
75785--75857	28	2.6	29	85	10	98	27	8	30	34	1.86
75939--76145	29	7.2	29	67	12	90	41	2	22	33	1.69
75942--76186	58	4.2	57	79	11	241	41	3	22	32	1.71
76092--76204	30	4.0	28	76	14	90	44	5	17	32	1.71
75920--76208	116	2.5	115	80	7	291	42	4	21	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76103--76219	29	4.0	30	76	16	95	40	5	20	34	1.75
77360--77391	3	10.7	3	100	0	64	31	0	0	68	0.90
78087--78154	17	4.1	16	74	9	64	54	5	4	35	1.45
78086--78150	34	1.9	34	90	6	105	56	6	4	32	1.44

Tables:   1

The End!