Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012680.1 Kokia drynarioides strain JFW-HI SEQ_127691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2830
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35


Found at i:1891 original size:17 final size:18

Alignment explanation


    Indices: 1864--1897  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1854 GCTTCGAGGA

                              
       1864 ATATGCCAAAATCTTCAC
          1 ATATGCCAAAATCTTCAC

                             
       1882 ATAT-CCAAAATCTTCA
          1 ATATGCCAAAATCTTCA

       1898 TAATTGTTAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.41, C:0.26, G:0.03, T:0.29


Consensus pattern (18 bp):   
ATATGCCAAAATCTTCAC
Done.