Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012685.1 Kokia drynarioides strain JFW-HI SEQ_127696, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3386
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37


Found at i:509 original size:29 final size:29

Alignment explanation


    Indices: 477--543  Score: 73
    Period size: 29  Copynumber: 2.3  Consensus size: 29

        467 TTTCTTAAAT

                       * *                
        477 TTTAATCTTTTTATTCTATTTT-CTATTTA
          1 TTTAATCTTTTAAATC-ATTTTACTATTTA

                   *              * *    
        506 TTTAATCCTTTAAATCATTTTATTTTTTA
          1 TTTAATCTTTTAAATCATTTTACTATTTA

                     
        535 TTTAATCTT
          1 TTTAATCTT

        544 GGTATTTGAT


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
  28    5  0.16
  29   26  0.84

ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66


Consensus pattern (29 bp):   
TTTAATCTTTTAAATCATTTTACTATTTA
Done.