Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012689.1 Kokia drynarioides strain JFW-HI SEQ_127700, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1617
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:428 original size:36 final size:36

Alignment explanation


    Indices: 381--451  Score: 142
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        371 TTGGAAATAG

                                                
        381 GCCAATGTTTCTGATGCAATCGAAACTTAACTAAAT
          1 GCCAATGTTTCTGATGCAATCGAAACTTAACTAAAT

                                               
        417 GCCAATGTTTCTGATGCAATCGAAACTTAACTAAA
          1 GCCAATGTTTCTGATGCAATCGAAACTTAACTAAA

        452 AATATGACTA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30


Consensus pattern (36 bp):   
GCCAATGTTTCTGATGCAATCGAAACTTAACTAAAT

Found at i:1457 original size:25 final size:23

Alignment explanation


    Indices: 1429--1474  Score: 65
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       1419 GTTGGATCCA

                                     
       1429 AATTAAATTCTAAAAAAATAATTTG
          1 AATTAAA-TCT-AAAAAATAATTTG

                         *       
       1454 AATTAAATCTAAACAATAATT
          1 AATTAAATCTAAAAAATAATT

       1475 CCCTAATTGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23   10  0.50
  24    3  0.15
  25    7  0.35

ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35


Consensus pattern (23 bp):   
AATTAAATCTAAAAAATAATTTG
Done.