genome.fa.s12690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012690.1 Kokia drynarioides strain JFW-HI SEQ_127701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192737

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561--697	45	3.0	45	82	2	159	34	27	18	20	1.96
692--734	21	2.0	21	86	0	59	23	34	11	30	1.90
4050--4135	4	21.2	4	75	11	77	1	32	0	66	1.00
4049--4136	29	3.1	30	77	14	96	1	34	0	64	1.01
4050--4136	20	4.5	19	80	13	90	1	33	0	65	1.00
4277--4341	28	2.3	28	97	0	121	26	30	23	20	1.98
4863--4894	3	10.7	3	100	0	64	31	0	0	68	0.90
7391--7432	18	2.3	18	87	0	57	28	2	4	64	1.26
8113--8152	21	1.9	21	84	0	53	57	2	0	40	1.12
8262--8338	16	4.6	16	68	12	57	29	0	5	64	1.15
13351--13401	21	2.3	23	86	10	70	41	29	11	17	1.85
13976--14151	40	4.4	40	86	2	212	26	23	9	41	1.84
20652--20696	24	1.9	23	86	4	63	48	0	2	48	1.13
26135--26169	18	2.0	18	88	5	54	60	2	0	37	1.12
32711--32851	70	2.0	70	86	5	196	30	17	14	37	1.90
36558--36901	171	2.0	173	88	6	520	26	8	22	43	1.82
41153--41255	46	2.2	46	87	0	143	37	22	17	22	1.94
44172--44305	24	5.6	24	73	3	108	35	38	9	17	1.82
45471--45720	84	3.0	84	88	4	380	46	24	4	24	1.72
46170--46196	10	2.7	10	100	0	54	33	11	22	33	1.89
46593--46645	16	3.3	17	74	12	58	41	7	0	50	1.30
48351--48385	17	2.1	17	88	0	52	25	11	31	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52666--52795	64	2.0	63	86	1	179	26	19	13	40	1.89
52884--52937	28	2.0	27	89	7	83	24	18	12	44	1.85
53682--53750	34	2.0	34	100	0	138	42	8	23	26	1.83
55319--55508	83	2.4	81	86	4	269	16	13	14	56	1.68
63157--63189	17	1.9	17	93	0	57	48	0	9	42	1.35
63713--63763	19	2.6	19	78	6	57	62	11	3	21	1.45
64897--64941	5	8.8	5	85	4	54	17	2	4	75	1.07
64896--64947	21	2.5	22	78	9	63	15	1	5	76	1.05
65070--65148	22	3.5	23	73	13	76	17	0	7	74	1.04
67132--67172	20	2.1	20	86	13	59	0	14	2	82	0.76
69603--69646	18	2.4	18	80	0	52	31	13	6	47	1.69
69610--69663	24	2.2	24	83	6	65	27	16	9	46	1.78
76032--76165	53	2.5	53	79	8	155	35	21	17	24	1.95
76032--76157	27	4.7	27	76	5	114	36	21	16	25	1.94
76165--76247	28	3.0	27	75	12	71	34	18	18	28	1.94
83151--83205	21	2.6	21	67	0	56	60	3	27	9	1.44
84539--84824	58	4.9	57	82	8	299	39	2	25	32	1.70
84572--84776	28	7.1	29	67	20	92	39	1	27	31	1.68
84482--84827	116	3.0	116	81	8	382	39	4	25	31	1.74
84645--84824	29	6.2	30	68	13	108	40	2	25	32	1.68
85676--85738	28	2.2	29	91	2	101	25	12	31	30	1.93
85723--85945	58	3.8	57	78	8	202	41	4	23	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85695--85796	28	3.6	28	75	15	93	32	6	29	31	1.84
85723--85941	116	1.9	115	83	5	289	41	4	22	31	1.74
85851--85946	29	3.3	29	70	18	83	43	5	21	29	1.74
85753--86032	58	4.8	57	79	9	253	43	3	20	32	1.68
85723--86032	117	2.7	114	79	10	288	42	3	21	32	1.70
85895--86004	29	3.8	29	73	11	89	47	1	17	33	1.58
87036--87147	3	37.3	3	71	10	68	37	3	4	54	1.38
87049--87167	9	12.9	9	70	8	69	38	2	5	53	1.36
87113--87152	19	2.1	19	85	0	53	40	2	5	52	1.37
87843--87922	17	4.7	17	82	0	97	53	2	1	42	1.22
89064--89127	3	21.0	3	80	3	74	35	0	1	62	1.05
89875--89950	17	4.4	17	83	8	100	55	2	0	42	1.14
89994--90053	13	4.5	13	76	19	70	58	0	0	41	0.98
89994--90041	24	1.9	26	87	8	73	58	0	0	41	0.98
89994--90053	16	4.5	14	78	21	67	58	0	0	41	0.98
89990--90064	38	1.9	38	92	7	125	57	0	0	42	0.98
93622--93676	26	2.1	27	83	10	69	69	0	0	30	0.89
100026--100076	25	2.0	25	92	0	84	45	5	9	39	1.62
109807--109863	29	1.9	30	89	3	89	45	17	7	29	1.75
109816--109871	29	1.9	29	85	0	76	48	17	5	28	1.69
111641--111686	9	5.3	9	76	7	51	36	0	10	52	1.37
111849--111873	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117248--117297	24	2.0	25	85	14	68	66	0	2	32	1.03
124624--124664	17	2.4	18	80	12	50	53	12	19	14	1.72
133936--134226	51	5.6	51	85	2	350	34	15	22	28	1.94
141257--141346	42	2.1	42	91	0	144	36	27	5	30	1.80
142615--142688	37	2.0	38	91	2	123	20	5	13	60	1.52
144060--144257	78	2.5	79	92	3	328	29	19	15	35	1.93
146978--147175	50	3.9	50	79	9	222	40	12	13	33	1.82
146983--147175	101	1.9	101	85	4	264	40	12	13	33	1.83
150714--150777	27	2.3	28	79	12	69	57	0	3	39	1.14
152576--152602	13	2.1	13	100	0	54	25	22	22	29	1.99
156809--156910	53	1.9	53	95	0	186	62	6	19	10	1.49
157051--157191	71	2.0	71	87	2	203	39	38	4	18	1.70
157598--157652	18	3.1	18	70	19	60	54	7	9	29	1.58
158299--158344	21	2.2	21	88	0	65	28	30	15	26	1.96
160121--160307	39	4.8	39	76	2	153	24	12	20	42	1.86
162386--162444	19	3.0	20	78	14	70	61	3	8	27	1.41
162620--162688	11	6.9	10	80	11	79	39	1	1	57	1.16
162619--162688	20	3.5	20	76	7	79	40	1	1	57	1.17
162619--162688	10	7.1	9	74	16	59	40	1	1	57	1.17
162620--162713	40	2.3	40	81	5	109	40	2	1	56	1.18
162696--162745	20	2.6	19	77	3	55	36	0	2	62	1.07
166118--166150	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172518--172547	8	3.9	8	95	4	53	36	0	23	40	1.55
180859--180903	20	2.1	22	84	8	58	42	2	2	53	1.25

Tables:   1

The End!