genome.fa.s12697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012697.1 Kokia drynarioides strain JFW-HI SEQ_127708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91801

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897--933	18	2.1	18	89	0	56	48	0	27	24	1.51
8153--8203	20	2.5	20	100	0	102	35	13	17	33	1.89
9012--9062	22	2.3	22	96	0	93	47	17	21	13	1.82
9106--9184	23	3.4	23	84	8	90	41	25	17	15	1.88
9081--9184	46	2.3	44	79	12	111	40	25	19	14	1.89
10546--10576	15	2.1	15	100	0	62	25	12	35	25	1.92
10655--10692	19	2.0	20	84	5	51	23	10	5	60	1.50
18579--18614	13	2.8	13	95	0	63	27	19	36	16	1.93
19826--19928	25	4.1	25	66	18	79	36	2	5	54	1.40
19797--19949	75	2.0	75	96	0	279	35	5	6	51	1.52
20192--20322	66	2.0	66	96	0	244	24	16	13	45	1.84
20515--20575	30	2.1	29	87	3	86	32	6	8	52	1.57
24346--24393	24	2.0	25	83	4	62	31	2	0	66	1.03
24431--24575	73	2.0	73	100	0	290	40	9	17	31	1.82
24558--24582	12	2.1	12	100	0	50	28	16	32	24	1.96
25718--25927	30	7.1	29	82	8	210	36	1	25	36	1.65
25694--25927	59	3.9	59	80	10	255	36	1	25	36	1.66
26975--27006	16	1.9	17	93	6	57	40	0	0	59	0.97
26982--27043	31	2.0	32	87	9	92	33	4	4	56	1.42
27606--27674	36	1.9	36	93	0	120	17	7	31	43	1.76
27790--27856	17	3.9	17	78	7	73	52	4	2	40	1.37
27780--27877	6	17.0	6	70	12	71	50	4	3	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27824--27877	23	2.3	23	90	0	81	53	3	1	40	1.29
27809--27874	17	3.8	18	86	9	84	53	6	1	39	1.35
27824--27885	23	2.7	23	85	5	72	56	3	3	37	1.32
35000--35185	96	1.9	97	84	9	247	35	13	20	30	1.92
35404--35657	30	8.7	29	73	14	122	32	5	29	33	1.79
35514--35835	30	10.9	30	74	10	238	31	4	27	36	1.77
35467--35835	59	6.3	58	76	9	270	31	4	27	35	1.77
35551--35835	30	9.7	30	76	8	239	31	4	27	36	1.76
35514--35835	29	10.9	30	73	14	183	31	4	27	36	1.77
37652--37734	17	4.8	17	83	1	94	50	2	1	45	1.22
37684--37757	23	3.2	23	82	3	94	56	2	0	40	1.13
37654--37783	17	7.2	17	72	14	91	53	3	1	42	1.26
37671--37740	6	12.0	6	80	6	81	52	2	0	44	1.15
37684--37765	41	2.0	41	83	4	103	56	3	0	40	1.17
38103--38957	202	4.2	202	81	4	862	22	22	18	36	1.95
50645--50715	29	2.5	28	84	6	88	38	1	28	32	1.66
50673--50901	30	7.8	30	77	10	215	33	4	26	36	1.76
50669--50901	88	2.6	88	78	12	262	32	4	27	36	1.76
51289--51314	11	2.4	11	100	0	52	15	19	38	26	1.91
51722--51771	22	2.3	21	79	3	55	38	14	0	48	1.44
51973--52008	3	11.7	3	94	5	63	33	0	0	66	0.92
52709--52812	6	18.0	6	73	11	83	51	2	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52709--52840	17	7.4	17	72	13	95	53	3	1	41	1.28
52755--52829	24	3.2	24	83	5	73	54	5	0	40	1.23
63094--63119	2	13.0	2	100	0	52	50	0	0	50	1.00
63133--63227	33	2.8	33	77	6	91	65	2	3	29	1.20
71972--72109	46	3.0	46	100	0	276	34	2	21	41	1.66
72606--72640	18	1.9	18	88	11	54	2	37	5	54	1.39
72841--72869	14	2.0	15	93	6	51	31	6	6	55	1.53
77693--77749	30	1.9	30	85	0	78	43	3	5	47	1.43
85592--85627	3	12.0	3	100	0	72	66	0	0	33	0.92
86723--87268	59	9.3	58	84	1	651	32	25	7	34	1.83
86723--87300	118	4.9	117	84	4	725	32	26	7	34	1.83
86723--87268	177	3.1	176	84	5	735	32	25	7	34	1.83
87114--87265	29	5.3	27	64	19	76	30	25	5	38	1.78
87117--87288	29	5.9	28	66	23	72	31	25	6	37	1.81
87193--87288	29	3.2	30	71	19	76	34	25	6	34	1.81

Tables:   1

The End!