Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012698.1 Kokia drynarioides strain JFW-HI SEQ_127709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135744
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Found at i:2479 original size:26 final size:26
Alignment explanation
Indices: 2448--2498 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2438 CTTCCAGAAA
2448 TTTAGCT-TATACAAGCCCAAACAGAG
1 TTTAGCTCT-TACAAGCCCAAACAGAG
*
2474 TTTAGCTCTTATAAGCCCAAACAGA
1 TTTAGCTCTTACAAGCCCAAACAGA
2499 ATATTTCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (26 bp):
TTTAGCTCTTACAAGCCCAAACAGAG
Found at i:2516 original size:26 final size:26
Alignment explanation
Indices: 2457--2561 Score: 106
Period size: 25 Copynumber: 4.1 Consensus size: 26
2447 ATTTAGCTTA
* * *
2457 TACAAGCCCAAACAGAGTTTAGCTCT
1 TACAAGCCCAAACAGAATATCGCTCT
* **
2483 TATAAGCCCAAACAGAATATTTCTCT
1 TACAAGCCCAAACAGAATATCGCTCT
* * *
2509 TACGAG-CCAATCAAAATATCGCTCT
1 TACAAGCCCAAACAGAATATCGCTCT
*
2534 TACAAG-CCAGACAGAATATCGCTCT
1 TACAAGCCCAAACAGAATATCGCTCT
2559 TAC
1 TAC
2562 GAGCTAGAAT
Statistics
Matches: 64, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
25 39 0.61
26 25 0.39
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (26 bp):
TACAAGCCCAAACAGAATATCGCTCT
Found at i:2640 original size:27 final size:27
Alignment explanation
Indices: 2505--2659 Score: 128
Period size: 25 Copynumber: 6.0 Consensus size: 27
2495 CAGAATATTT
* *
2505 CTCTTACGAGCC--AATCAAAATATCG
1 CTCTTACGAGCCAGAATCAGAATAACG
* *
2530 CTCTTACAAGCCAG-A-CAGAATATCG
1 CTCTTACGAGCCAGAATCAGAATAACG
* * * *
2555 CTCTTACGAGCTAGAATTAGAATATCA
1 CTCTTACGAGCCAGAATCAGAATAACG
* *
2582 CT-TTAAGAGCCAG-A-CAGGATAACG
1 CTCTTACGAGCCAGAATCAGAATAACG
2606 CTCCTT-CGAGCCAGAATCAGAATAACG
1 CT-CTTACGAGCCAGAATCAGAATAACG
* * *
2633 CTCTTTCGAGCTAGAATTAGAATAACG
1 CTCTTACGAGCCAGAATCAGAATAACG
2660 TTATTTCGAG
Statistics
Matches: 105, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
24 8 0.08
25 40 0.38
26 17 0.16
27 40 0.38
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (27 bp):
CTCTTACGAGCCAGAATCAGAATAACG
Found at i:2666 original size:27 final size:27
Alignment explanation
Indices: 2588--2672 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 27
2578 ATCACTTTAA
* **
2588 GAGCCAG-A-CAGGATAACGCTCCTTC
1 GAGCCAGAATCAGAATAACGCTATTTC
*
2613 GAGCCAGAATCAGAATAACGCTCTTTC
1 GAGCCAGAATCAGAATAACGCTATTTC
* * *
2640 GAGCTAGAATTAGAATAACGTTATTTC
1 GAGCCAGAATCAGAATAACGCTATTTC
2667 GAGCCA
1 GAGCCA
2673 AAGTTAGATT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
25 7 0.14
26 1 0.02
27 43 0.84
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (27 bp):
GAGCCAGAATCAGAATAACGCTATTTC
Found at i:2748 original size:19 final size:21
Alignment explanation
Indices: 2724--2762 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2714 CAGGAATATA
2724 TTCAAA-A-TAAATATATAAT
1 TTCAAATATTAAATATATAAT
*
2743 TTCAAATATTAAATTTATAA
1 TTCAAATATTAAATATATAA
2763 GTTAATAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 1 0.06
21 10 0.59
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (21 bp):
TTCAAATATTAAATATATAAT
Found at i:7962 original size:30 final size:30
Alignment explanation
Indices: 7909--8003 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 30
7899 GCTCTCCTTT
* * *
7909 CATCTATGCTCATAACACGAGTGTTCACAA
1 CATCAATGCTCACAACACAAGTGTTCACAA
** * **
7939 CATCAATGCTTGCAACTCAAGTGTTCGGAA
1 CATCAATGCTCACAACACAAGTGTTCACAA
* * *
7969 CATGAGTGCTCACAACACTAGTGTTCACAA
1 CATCAATGCTCACAACACAAGTGTTCACAA
7999 CATCA
1 CATCA
8004 GTGTTCGTAG
Statistics
Matches: 48, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (30 bp):
CATCAATGCTCACAACACAAGTGTTCACAA
Found at i:8007 original size:15 final size:15
Alignment explanation
Indices: 7928--8009 Score: 62
Period size: 15 Copynumber: 5.5 Consensus size: 15
7918 TCATAACACG
7928 AGTGTTCACAACATC
1 AGTGTTCACAACATC
* *
7943 AATGCTT-GCAAC-TC
1 AGTG-TTCACAACATC
** *
7957 AAGTGTTCGGAACATG
1 -AGTGTTCACAACATC
*
7973 AGTGCTCACAACA-C
1 AGTGTTCACAACATC
7987 TAGTGTTCACAACATC
1 -AGTGTTCACAACATC
8003 AGTGTTC
1 AGTGTTC
8010 GTAGCTCTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
14 4 0.08
15 43 0.84
16 4 0.08
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (15 bp):
AGTGTTCACAACATC
Found at i:8022 original size:60 final size:60
Alignment explanation
Indices: 7915--8042 Score: 161
Period size: 60 Copynumber: 2.1 Consensus size: 60
7905 CTTTCATCTA
* *
7915 TGCTCATAACACGAGTGTTCACAACATCAATGCTTGCAACTCAAGTGTTCGGAACA-TGAG
1 TGCTCACAACACGAGTGTTCACAACATCAATGCTTGCAACTCAAGTGTTCGCAACACT-AG
* * * * *
7975 TGCTCACAACACTAGTGTTCACAACATCAGTG-TTCGTAGCTCTAGTGTTCGCAACACTAG
1 TGCTCACAACACGAGTGTTCACAACATCAATGCTT-GCAACTCAAGTGTTCGCAACACTAG
8035 TGCTCACA
1 TGCTCACA
8043 TCTTCCAAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.03
60 56 0.95
61 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (60 bp):
TGCTCACAACACGAGTGTTCACAACATCAATGCTTGCAACTCAAGTGTTCGCAACACTAG
Found at i:8034 original size:15 final size:15
Alignment explanation
Indices: 7958--8036 Score: 63
Period size: 15 Copynumber: 5.3 Consensus size: 15
7948 TTGCAACTCA
*
7958 AGTGTTCGGAACA-T
1 AGTGTTCGCAACACT
* *
7972 GAGTGCTCACAACACT
1 -AGTGTTCGCAACACT
*
7988 AGTGTTCACAACA-T
1 AGTGTTCGCAACACT
* * *
8002 CAGTGTTCGTAGCTCT
1 -AGTGTTCGCAACACT
8018 AGTGTTCGCAACACT
1 AGTGTTCGCAACACT
8033 AGTG
1 AGTG
8037 CTCACATCTT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
14 1 0.02
15 47 0.94
16 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (15 bp):
AGTGTTCGCAACACT
Found at i:23964 original size:21 final size:21
Alignment explanation
Indices: 23921--23974 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
23911 GAAGTGTGGG
*
23921 TTGTATCGGTAGTACTCATAC
1 TTGTATCGGTAGAACTCATAC
*
23942 TTGTATCGGTAGAAC-CTTCAC
1 TTGTATCGGTAGAACTCAT-AC
*
23963 TTCTATCGGTAG
1 TTGTATCGGTAG
23975 GAAACTGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (21 bp):
TTGTATCGGTAGAACTCATAC
Found at i:26586 original size:24 final size:24
Alignment explanation
Indices: 26532--26589 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
26522 GTGGACCATG
26532 CATAAATTA-ATTTAATATTAAAA
1 CATAAATTATATTTAATATTAAAA
*
26555 CATAAAATTATATTTAATAATTTAAA
1 CAT-AAATTATATTTAAT-ATTAAAA
26581 -ATAAATTAT
1 CATAAATTAT
26590 TCCATTAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 13 0.42
25 9 0.29
26 6 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (24 bp):
CATAAATTATATTTAATATTAAAA
Found at i:34495 original size:21 final size:22
Alignment explanation
Indices: 34471--34511 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
34461 CCTGTACTAG
34471 TTCTACCGATACAAG-CATGAT
1 TTCTACCGATACAAGTCATGAT
34492 TTCTACCGATACAAGTCATG
1 TTCTACCGATACAAGTCATG
34512 CAACTACCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (22 bp):
TTCTACCGATACAAGTCATGAT
Found at i:34518 original size:21 final size:20
Alignment explanation
Indices: 34473--34524 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
34463 TGTACTAGTT
*
34473 CTACCGATACAAGCATGATTT
1 CTACCGATACAAGCATGA-TA
34494 CTACCGATACAAGTCATGCA-A
1 CTACCGATACAAG-CATG-ATA
34515 CTACCGATAC
1 CTACCGATAC
34525 CAAAAACTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 23 0.82
22 4 0.14
23 1 0.04
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (20 bp):
CTACCGATACAAGCATGATA
Found at i:47767 original size:19 final size:19
Alignment explanation
Indices: 47721--47774 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
47711 TAGGTTTTGA
* *
47721 AATTTTTAAGTTTCATTTT
1 AATTTTTATGTTTAATTTT
* * *
47740 TATTGTTATTTTTAATTTT
1 AATTTTTATGTTTAATTTT
47759 AATTTTTATGTTTAAT
1 AATTTTTATGTTTAAT
47775 AAAGGGGGTC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.67
Consensus pattern (19 bp):
AATTTTTATGTTTAATTTT
Found at i:48378 original size:24 final size:24
Alignment explanation
Indices: 48351--48398 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
48341 TCAATGAAGA
*
48351 AGTGAAAGAGAGATCTAATTCAAT
1 AGTGAAAAAGAGATCTAATTCAAT
*
48375 AGTGAAAAAGATATCTAATTCAAT
1 AGTGAAAAAGAGATCTAATTCAAT
48399 CTTTAAGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (24 bp):
AGTGAAAAAGAGATCTAATTCAAT
Found at i:72501 original size:21 final size:23
Alignment explanation
Indices: 72477--72531 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 23
72467 CCTGCAACTT
*
72477 CTACCGATACAAGTAT-ACA-AA
1 CTACCGATACAACTATAACAGAA
*
72498 CTACCGATACTACTATAAACAGAA
1 CTACCGATACAACTAT-AACAGAA
72522 CTACCGATAC
1 CTACCGATAC
72532 TTCTTATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 14 0.48
23 3 0.10
24 12 0.41
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (23 bp):
CTACCGATACAACTATAACAGAA
Found at i:72532 original size:21 final size:21
Alignment explanation
Indices: 72477--72532 Score: 58
Period size: 24 Copynumber: 2.5 Consensus size: 21
72467 CCTGCAACTT
* *
72477 CTACCGATACAAGTATACAAA
1 CTACCGATACTAGTAAACAAA
*
72498 CTACCGATACTACTATAAACAGAA
1 CTACCGATACTA--GTAAACA-AA
72522 CTACCGATACT
1 CTACCGATACT
72533 TCTTATGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.38
23 5 0.17
24 13 0.45
ACGTcount: A:0.43, C:0.27, G:0.09, T:0.21
Consensus pattern (21 bp):
CTACCGATACTAGTAAACAAA
Found at i:73217 original size:43 final size:43
Alignment explanation
Indices: 73117--73323 Score: 206
Period size: 43 Copynumber: 4.9 Consensus size: 43
73107 AATTAACCTT
** * * *
73117 ATGCTCAAACCGAGTCATAAGTCTTCCTTTTAAA-ACAATCTT
1 ATGCTCATCCCGAGACATAAGTCTTCCTTTTAAACATAATCTC
*
73159 ATGCTCTAT-CTGAGACATAAGTCTTCCTTTTAAACATAATCTC
1 ATGCTC-ATCCCGAGACATAAGTCTTCCTTTTAAACATAATCTC
73202 ATGCTCATCCCGAGACATAAGTCTTCC-TTTAAACATAATCTC
1 ATGCTCATCCCGAGACATAAGTCTTCCTTTTAAACATAATCTC
* ** * *
73244 ATGCTCA-CCTCGAGTCACGAGTCTTCCATTTATACATAATCTC
1 ATGCTCATCC-CGAGACATAAGTCTTCCTTTTAAACATAATCTC
* * * * * * *
73287 ACGCACATTCTGAGACATGAGTCTTCTTTTTATACAT
1 ATGCTCATCCCGAGACATAAGTCTTCCTTTTAAACAT
73324 CAAGTGATTC
Statistics
Matches: 141, Mismatches: 18, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.01
42 67 0.48
43 71 0.50
44 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (43 bp):
ATGCTCATCCCGAGACATAAGTCTTCCTTTTAAACATAATCTC
Found at i:73222 original size:85 final size:86
Alignment explanation
Indices: 73117--73318 Score: 221
Period size: 85 Copynumber: 2.4 Consensus size: 86
73107 AATTAACCTT
* * * * *
73117 ATGCTCAAACCGAGTCATAAGTCTTCCTTTTAAA-ACAATCTTATGCTCTATCT-GAGACATAAG
1 ATGCTCATACCGAGACATAAGTCTTCCTTTTAAACACAATCTCATGCTC-ACCTCGAGACACAAG
*
73180 TCTTCCTTTTAAACATAATCTC
65 TCTTCCATTTAAACATAATCTC
* * * *
73202 ATGCTCATCCCGAGACATAAGTCTTCC-TTTAAACATAATCTCATGCTCACCTCGAGTCACGAGT
1 ATGCTCATACCGAGACATAAGTCTTCCTTTTAAACACAATCTCATGCTCACCTCGAGACACAAGT
*
73266 CTTCCATTTATACATAATCTC
66 CTTCCATTTAAACATAATCTC
* * * * * *
73287 ACGCACATTCTGAGACATGAGTCTTCTTTTTA
1 ATGCTCATACCGAGACATAAGTCTTCCTTTTA
73319 TACATCAAGT
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
84 9 0.09
85 84 0.87
86 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (86 bp):
ATGCTCATACCGAGACATAAGTCTTCCTTTTAAACACAATCTCATGCTCACCTCGAGACACAAGT
CTTCCATTTAAACATAATCTC
Found at i:77819 original size:28 final size:28
Alignment explanation
Indices: 77766--77852 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 28
77756 ATGTGATAAA
*
77766 AAAATTATAAAAAAAAATCA-ATAAAAAATT
1 AAAATT-TAATAAAAAAT-AGA-AAAAAATT
* * *
77796 AAATTTTAATAAAAAATATAAAAAGATT
1 AAAATTTAATAAAAAATAGAAAAAAATT
* *
77824 AAAATTTATTAAAAATTAGAAAAAAATT
1 AAAATTTAATAAAAAATAGAAAAAAATT
77852 A
1 A
77853 TAAAATGCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 32 0.67
29 11 0.23
30 5 0.10
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAATTTAATAAAAAATAGAAAAAAATT
Found at i:89057 original size:31 final size:29
Alignment explanation
Indices: 88982--89057 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 29
88972 TATAAAATGA
*
88982 GTACATGAATTTGTTTATTTTTTTAGATTG
1 GTACATGAATTT-TTTATTTTTTTAAATTG
* * *
89012 GTA-TTTATAGTTTTTATTTTGTCTTAAATTG
1 GTACATGA-ATTTTTTATTTT-T-TTAAATTG
89043 GTACATGAATTTTTT
1 GTACATGAATTTTTT
89058 TTTCGTCCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
29 10 0.29
30 7 0.20
31 16 0.46
32 2 0.06
ACGTcount: A:0.24, C:0.04, G:0.14, T:0.58
Consensus pattern (29 bp):
GTACATGAATTTTTTATTTTTTTAAATTG
Found at i:92438 original size:24 final size:24
Alignment explanation
Indices: 92411--92467 Score: 105
Period size: 24 Copynumber: 2.4 Consensus size: 24
92401 CTTAGCTCAC
*
92411 ACGAGCCCAGAATGGTTATTTGTT
1 ACGAGCCCAGAATGGTTATCTGTT
92435 ACGAGCCCAGAATGGTTATCTGTT
1 ACGAGCCCAGAATGGTTATCTGTT
92459 ACGAGCCCA
1 ACGAGCCCA
92468 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (24 bp):
ACGAGCCCAGAATGGTTATCTGTT
Found at i:92505 original size:27 final size:27
Alignment explanation
Indices: 92460--92529 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
92450 TTATCTGTTA
* *
92460 CGAGCCCAAAATCAAAATAATGCTCTTT
1 CGAG-CCAAAATCAGAATAACGCTCTTT
*
92488 CGAGCCAGAATCAGAATAACGCTCTTT
1 CGAGCCAAAATCAGAATAACGCTCTTT
92515 CGAGCCAAAATCAGA
1 CGAGCCAAAATCAGA
92530 TTACTCCTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 34 0.89
28 4 0.11
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.20
Consensus pattern (27 bp):
CGAGCCAAAATCAGAATAACGCTCTTT
Found at i:94882 original size:19 final size:20
Alignment explanation
Indices: 94846--94885 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
94836 TTTGTTTTAC
*
94846 TTTATTATATATATTTTAAT
1 TTTATTATACATATTTTAAT
94866 TTTATTATACATA-TTTAAT
1 TTTATTATACATATTTTAAT
94885 T
1 T
94886 AACTCCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTATTATACATATTTTAAT
Found at i:99796 original size:18 final size:18
Alignment explanation
Indices: 99751--99794 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
99741 AAAAAGTGAT
99751 AAAAAAATAGAGAAAAAA
1 AAAAAAATAGAGAAAAAA
99769 AAGAAAAATACGAGAAAAAGA
1 AA-AAAAATA-GAGAAAAA-A
99790 AAAAA
1 AAAAA
99795 TAAAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.09
19 7 0.30
20 11 0.48
21 3 0.13
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.05
Consensus pattern (18 bp):
AAAAAAATAGAGAAAAAA
Found at i:101459 original size:24 final size:24
Alignment explanation
Indices: 101404--101459 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
101394 GGAGAGTTCT
* *
101404 CAAGAGGAAAATGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
* *
101428 AAATAAGAAAAAGAAAATGAAAAA
1 CAAGAAGAAAAAGAAAATGAAAAA
101452 CAAGAAGA
1 CAAGAAGA
101460 TACCCATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.71, C:0.04, G:0.18, T:0.07
Consensus pattern (24 bp):
CAAGAAGAAAAAGAAAATGAAAAA
Found at i:108022 original size:65 final size:65
Alignment explanation
Indices: 107942--108098 Score: 287
Period size: 65 Copynumber: 2.4 Consensus size: 65
107932 ATTTGGGTGG
107942 AGTAAAAGTTTTGGGGGAAAAGTAAAATGAAAATAAATTCAGGGGAAGTAAAATTTTGTAGGGAA
1 AGTAAAAGTTTTGGGGGAAAAGTAAAATGAAAATAAATTCAGGGGAAGTAAAATTTTGTAGGGAA
*
108007 AGTAAAAGTTTTGGGGGAAAAGTAAAATGAAAATAAATTCGGGGGAAGTAAAATTTTGTAGGGAA
1 AGTAAAAGTTTTGGGGGAAAAGTAAAATGAAAATAAATTCAGGGGAAGTAAAATTTTGTAGGGAA
* *
108072 AGTAAAAGTTTTTGGGGAAAAATAAAA
1 AGTAAAAGTTTTGGGGGAAAAGTAAAA
108099 GGGGAAATGT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 89 1.00
ACGTcount: A:0.46, C:0.01, G:0.27, T:0.25
Consensus pattern (65 bp):
AGTAAAAGTTTTGGGGGAAAAGTAAAATGAAAATAAATTCAGGGGAAGTAAAATTTTGTAGGGAA
Found at i:108028 original size:20 final size:19
Alignment explanation
Indices: 107982--108034 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
107972 AAATAAATTC
*
107982 AGGGGAAGTAAAATTTTGT
1 AGGGAAAGTAAAATTTTGT
108001 AGGGAAAGTAAAAGTTTTG-
1 AGGGAAAGTAAAA-TTTTGT
*
108020 GGGGAAAAGTAAAAT
1 AGGG-AAAGTAAAAT
108035 GAAAATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (19 bp):
AGGGAAAGTAAAATTTTGT
Found at i:108089 original size:19 final size:19
Alignment explanation
Indices: 108047--108091 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
108037 AAATAAATTC
*
108047 GGGGGAAGTAAAATTTTGT
1 GGGGAAAGTAAAATTTTGT
*
108066 AGGGAAAGTAAAAGTTTT-T
1 GGGGAAAGTAAAA-TTTTGT
108085 GGGGAAA
1 GGGGAAA
108092 AATAAAAGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.27
Consensus pattern (19 bp):
GGGGAAAGTAAAATTTTGT
Found at i:109387 original size:216 final size:215
Alignment explanation
Indices: 109007--115372 Score: 4942
Period size: 216 Copynumber: 29.2 Consensus size: 215
108997 TTAAAAACAC
* * * * *
109007 TTTTAGTCTTTGAATTAAAAACTTATTTACATGA-AAATGTTTCTCTCTTGGTTCTTGAACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
109071 TTCCAAACTTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGATTTCTTAAAGTATTCAAGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
* * * * *
109136 TCCATTCCTTCTAGAAATTTTTCGAGCATTCCATGCCCGGGCAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * *
109201 GTTTTTAATTTTGTAAAAAAG
195 GTTTGTCATTTTGTAAACAAG
* * *
109222 TTTTGGTCTTTGAATTTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
109287 TTTCGAACTTGTCAATCTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGATGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGA
* * * * * * *
109352 TCCATTCCTTCAAGCAATTTTTCGAACAATCCATGCTCGAGAAAGCGCATCATTTAGACTAAAAA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
109417 GTTTGTCATTTTGTAAACTAC
195 GTTTGTCATTTTGTAAACAAG
* *
109438 TTTTGGTCTTTGAA-TATAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTTTTGGACGAA
1 TTTTGGTCTTTGAATTA-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
109502 C-TTCTGAACTTATCAATCTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAACTACTCAACAC
65 CTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGAC
* * * *
109566 GATCCATTCCTTCGAGCAATTATCCAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAA
128 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
*
109631 TAGTTTGTCATTTTGTAAACAAC
193 TAGTTTGTCATTTTGTAAACAAG
* *
109654 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTAGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
109719 -TTC--A---G---AAC---T----GTTCTTTTATAACATCGCTTCCTTAAAGTATTAAAGACAA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
* * * * *
109768 TCAATTCCTTCGAGTAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAAAA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
*
109833 GTTTGTCATTTT-TAAACAAA
195 GTTTGTCATTTTGTAAACAAG
* * *
109853 TTTTGGTGTTTGAATTAATAACTTATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
109918 TTTCAAACTTGTCAATCTTTTATGAGTTCATTTATAACTTCGATTCCTTAAAGTATTCAGGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
* * * * * *
109983 TCCAATCCTTCCAGAAATTTTTTGAACATTCCATGCTCGTGAAATCGTATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
110048 GTTTGTCATTTTGTAAACAAG
195 GTTTGTCATTTTGTAAACAAG
* * *
110069 TTTTGGTCTTTGAATTAAAAACATT-TTTACTTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAA
1 TTTTGGTCTTTGAATTAAAAAC-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * ** * * * *
110133 CTTCCGAACTTCTCAAACTTTTAAAAGTTCTATTCTAACTTCAGTTGCTTAATGTATTCAAGACG
65 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACG
* * * *
110198 ATCAATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGGCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
110263 AGTTTGTCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * * * * *
110285 TTTTGCTCTTTGAATAAAAAAGTTATTTACGTGAGAATTGTTTCGCT-TTATGTTCTTGGATGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAA
* * * * * *
110349 CTTCCGAACTTGTCAAACTTTTTCTAGTTATTTTATAACTTTGGTTCCGTAAAGTATTCAAGACG
65 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACG
* * * *
110414 ATCCATTCCTTCGAGCTATTTTT--AAGCATTCCATGCTCGAGAAATCACATGATTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
*
110477 TATTTTGT-ACTTTTGTAAACAAG
193 TAGTTTGTCA-TTTTGTAAACAAG
* * * *
110500 TTTTGGTCTTTGAATTAAGAACTTATTTACGTGAGAACTGTTTCTCTATTGGTTCTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
110565 TTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTC-TTCCTTAAAGTATTCAGGACG
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC--TTCGTTCCTTAAAGTATTCAAGACG
* * ** *
110629 ATCCATTCCTTCGAGCAACTTTCCGAACATTCCATGCTCGGGAAATCATATAATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
110694 AGTTTGTCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* *
110716 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
110781 -TTCTGAACTTGTCAAATTTTTACGATTTCTTTGATAACTTCGGTTCCTTAAAATATTCATGGCG
66 TTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACG
* * * *
110845 ATACATTCCTTTGAGCAA-TTTTCTGAACATTCCATGGTCGGGAAATCGCATCATTTGGTTTAAA
129 ATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
110909 TAGCTTT-TCATTTTGTAAACAAG
193 TAG-TTTGTCATTTTGTAAACAAG
* *
110932 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
110997 TTCCAAACTTGTCAAACTTATACGAGTTCTTTTTGTAACTTTGGTTCCTTAAAGTATTCAAGACA
66 TTTCGAACTTGTCAAACTTTTACGAGTTC-TTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACG
* * * *** ** *
111062 ATTCATTCCTTCGAGCAATTTTCCAAACATTCTGCGCTCGGGAAATCATATCATTTGGTCCAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* *
111127 AGTCTGCCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * *
111149 TTTTGGTCTTTGAGTTAAAAACTTATTTACGTGTGAATT-TTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
111213 TTTCGAACCTT-TCAAACTTATACAAGTTCTTTTATAACTTCACTTCCTTAAAGTATTCAAGACG
66 TTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACG
* * ** *
111277 GTTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAAGGAAATCGCATCATTTGGTCCAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
111342 AGTTTGTCAATTTGTAAGCAAC
194 AGTTTGTCATTTTGTAAACAAG
* * * * *
111364 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTATATTGGTTTTTTGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
111429 -TTCTGAACATGTCAAAGTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAGGACG
66 TTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACG
* * *
111493 ATCCATTCCTTCGATCAATTTTTCGAACATTTCATGCTCGGGAAATTGCATCATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
111558 AGTTCGCCATTTTGAAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
** ** * * ** * * *
111580 TTTTGGTCTTTG-ATTAATCTACTAGGTATGAAACCG-GCA-TATCAGGAAATCGCATCATTTGA
1 TTTTGGTCTTTGAATTAA-AAACT---TAT-TTA-CGTG-AGAAT--TG-TTTCTC-TC-TTGGT
* ** ** * * * * *
111642 TC-T-AATC-AGTTTGTC-ATTTTTTAAACAACTTTT--G-G-TCTTTGAATTAAAACTT-ATTT
54 TCTTGGA-CGAACTT-TCGAACTTGT-CA-AACTTTTACGAGTTC-TT---TTATAACTTCGTTC
* *** * * * * * * *
111698 GTATGAGAATTGT-TTC-TCTCTTGGTTC-TTGGACGAACTTC-CG-AACTTGTCAAACTTTTTC
111 CT-T-A-AA--GTATTCAAGAC--GATCCATT---C---CTTCGAGCAATTTTTCGAAC--ATTC
* * *** * ** * * * * *
111758 GA-GTTCTTTTATAACTTCG-ATTCCTTAAAGTATTAA-AGATGGTACATTCCTTCG--AGCAAT
161 CATGCTC-GGGA-AA--TCGCA-TCATT-TGGTCTAAATAGTTTGT-CATT--TT-GTAAACAA-
*
111818 T
215 G
*** ** * * * * * * *
111819 TTTTGAAAATTCCATTCTCGAGAAATCGCATTATTT-GGTTTA-AATAGTTTGTCACTTTGGAAA
1 TTTTG-GTCTTTGAAT-T--A-AAA--AC-TTATTTACG-TGAGAATTGTTTCTCTC-TT-G---
* ** * **
111882 CAAGTT-TTGGTC--A--TT-GAA-TT-AAAAACTTATATACGTCAGAATTGTTTCCT--CTT-G
52 ---GTTCTTGGACGAACTTTCGAACTTGTCAAACTT-T-TACG--AG--TTCTTTTATAACTTCG
* * * * * *** * * ** *
111936 ATT-CTTGGAGGAACTTC-CGAACTTGA--AAAAACTTTGA-CTAGTTCTTTAATAAC-TT-C-G
108 -TTCCTT-AAAGTA-TTCAAG-AC--GATCCATTCCTTCGAGC-AATT-TTT-CGAACATTCCAT
* *** ** * * * ** * * * *
111993 GTTCCTTAAAGTCTTG-A--AGATGATC-CATTCCTTCGAGCAATTTTTTGAACAA-
164 GCTCGGGAAA-TC--GCATCATTTGGTCTAAATAGTTTG-TC-ATTTTGTAAACAAG
** * * ** ** * * * **
112045 TCCATGCTC-GTGAAATTGCATCAAC-T-GGT-C-T-A-AATAGTTTGTCT-TT--TT-GTAAAC
1 T-TTTGGTCTTTG-AATT--AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * * * *
112099 -AAGTTTTGGTTA-TTGAATTAAAAACTTATTTACATGAGAATTGTTTCACT--CTT-GCTT-CT
62 GAA-CTTTCG-AACTTG---T-CAAAC-T-TTTAC--GAG--TTCTTTTA-TAACTTCG-TTCCT
* * * * * *
112158 TCACCAA--ACTTC-TGAAC-TTCTCAATCTTTTACGAGCACTTTTAT--AACTTTGGTTCCTTA
113 T-A--AAGTA-TTCAAG-ACGATC-CATTC-CTT-CGAGCAATTTT-TCGAAC----ATTCC---
** ** * * ** * *
112217 AAGTTTTCAAGACGATC-CATTACTTTGAG-C--AATTTTTTGAACATTCCATGCTCCGGAAATC
162 -A-TGCTCGGGA-AATCGCATCA-TTTG-GTCTAAATAGTTTG-TCATT---T--T--GTAAA-C
112278 ACA-
213 A-AG
* * * ** * *
112281 TCATTTGGTCTAAATAGTTTGTCATTTTATAAACAAGATTTGGTCTTTAAATTAAAAATT-TAAT
1 T--TTTGGTC-------TTTG--A----ATTAA-AA-A-CT--TATTT-ACGTGAGAATTGT--T
*** * *
112345 TACGTGAGAATTGTTTCAGTCTTGGAACTTGGACGAACATTCGAACTTGTCAAACTTTTACGAGT
43 T-C-T--CTCTTG-GT---TCTTGG-A------CGAACTTTCGAACTTGTCAAACTTTTACGAGT
* * *
112410 TCTTTTATAACTTTGTTTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAATTTCTCGAAC
93 TCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * * *
112475 ATTTCATGCTCGAGAAATTGCATCATTTGGTCTAAATAATTTGTAATTTTGAAAACAAG
157 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
112534 TTTTAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGAAGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* ** * * * *
112599 TTTCGAACTTATCAAACTTTTAAAAGTTATTTTATAACTTTGGTTCCTTGAAGAATTCAAGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGA
* * * *
112664 TCCATTCCTTCGAGAAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTTGGTCAAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * * *
112729 ATTTATAATTTTGAAAACATG
195 GTTTGTCATTTTGTAAACAAG
* * *
112750 TTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
112815 GTCCCAACTTGTCAAACTTTTATGAGTTCTTTTGTAACTTCAATTCTTTAAAGTATTCAAGATGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGA
* * * * * *
112880 TCCATTCCTTCAAGAAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCACTTGGTCTGAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
112945 GTATGTCATTTTGTAAACATG
195 GTTTGTCATTTTGTAAACAAG
* * * * * * **
112966 ATTTGGTCTTTTAATTAACAACTTATTTACATAAGAATTGTTTCTTTCTTTTTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
113031 -TT----CTAGTCAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTAAAGTATTTAAGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGA
* * * *** * *
113091 T---TTCCTTCGAGCAATTTTTTGAAAATTTCATGCTCCAAAAATCGCATCACTTGGTCAAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
113153 -TTTAGTCATTTTGTAAACAAG
195 GTTT-GTCATTTTGTAAACAAG
** * * *
113174 TTTTCATATTTGAATTAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
113239 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
* * * * * * *
113304 -CCGATTCCTTTGAGCAATTTTTCAAACATTCTAGGCTCAGGAAATCACATCAATTGGTCTAAAT
130 TCC-ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
113368 AGTTTGTCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
*
113390 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * ** * * * * *
113455 TTGCCAACTGGAAAAAACTTTTACTAGTTCTTTTATAACTCCGGTTCCTTAAAGTAATCCAGAGG
66 TTTCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACG
* * * **
113520 ATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATCGAATCATTTCATCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
113585 AATTTGTAATTTTGTAAACAAA
194 AGTTTGTCATTTTGTAAACAAG
* * *
113607 TTTTAGTCTTTGAATTAAAAACTTATTTATGTGAGAATTCG-TTCTCTCTTGGTTCTTTGACGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAA
* * *
113671 C-TTCAGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTTGATTCCTTAAAGTATTCAAGAT
65 CTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGAC
* * ** * * * *
113735 GATTCATTCCTTTGAGCAA-TTTTCGAGTATTCCATGCTCGGGAAATCACATCAATTAGTGTAAA
128 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
** *
113799 TAGTTTGTCATTTTGTAAGGAAC
193 TAGTTTGTCATTTTGTAAACAAG
* * * * *
113822 TTTTGATCTTTGAATTAAAAACTTATTTATGTGAGACTTGTTTCTCT-TT-GTTCTTAGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
113885 TTTTGAACTTGTCAAACTTTTATGAGTTCTTTTAAAACTTTGATTCCTTAAAGTAGTCAAGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
* * * * * * *
113950 TCCATTCCTTCGAGTAATTTTTTGAACATTCCATGCTTGGGAAATCACATTAATTGGTATAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
114015 GTTTGTCATTTTGTAAGCAAC
195 GTTTGTCATTTTGTAAACAAG
* * *
114036 TTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
114101 -TTCTGAAGTTGTCAAACTTTTACGGGTTCTTTTATAAATTCGCTTCCTTAAAGTTTTCAAGACG
66 TTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACG
* * * **
114165 ATCCATTCCTTCGAGCAATTTTTCGAACAATCCATGCTCGAGAAATTGCATCATTTCATCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
114230 AGTTTGTCATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * **
114252 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCCTGGTTCTTGGATAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * *
114317 TTTCGAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGA
* * * ***
114382 TCCATTCCATCGAGAAATTTTTTGAACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * *
114447 GTTTGTC-GTTTGTAGACATG
195 GTTTGTCATTTTGTAAACAAG
* * * * * *
114467 ATTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAGTATTTCTCTCTTTGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
114532 -TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGACA
66 TTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACG
* * * *
114596 ATACATTCCGTCGAGCAATTTTTCGAACATTCCATACTCGGGAAATCGCATCATTTGGTCTAAGT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
114661 AGTTTGTCA-TTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * * *
114682 TTTTGGTCTGTGAATTGAAAATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* ** * * * * * *
114747 TTCCGAACTTGAAAAAACTTTTACAAGTTGTTTTATTACTCCGGTTCCTTAAAGAATACAAGACG
66 TTTCGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACG
* * * ** * *
114812 ATCCATTACTTTGAGCAATTTTTTGAACATTCCATGCTTTGAAAATCGCATCATTTGATCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
114877 AATATGTAATTTTGTAAACAAG
194 AGTTTGTCATTTTGTAAACAAG
* * * * *
114899 TTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTCTTTCTATCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * *
114964 TTTCGAACTAATCAAACTTTTACGAGTTCTTTTATAGCTTCGATTTCTTAAAATATTCATGACGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGA
** * * * * * ** * *
115029 TTTATTTCTTTGAGAAATTTTTTGAACATTCCATTCTCCAGAAATCGCATCAATTGGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
115094 GTTTGTCATTTTGTAAACAAG
195 GTTTGTCATTTTGTAAACAAG
*
115115 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* **
115180 TTTCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGTGA
66 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGA
* * * * * * ** * *
115245 CCCATTCCATCAAGCAATTCTCCAAACATTCCATGCTCGAAAAATCGCATCATTTGGTTTGAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
*
115310 GCTTGTCATTTTGTAAACAAG
195 GTTTGTCATTTTGTAAACAAG
* * *
115331 TTTTTGTCTTTGAGTTAAAAACTTATTTATGTGAGAATTGTT
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
115373 AATGCGAGCT
Statistics
Matches: 4951, Mismatches: 897, Indels: 605
0.77 0.14 0.09
Matches are distributed among these distances:
199 67 0.01
200 106 0.02
202 1 0.00
204 1 0.00
205 5 0.00
206 1 0.00
207 4 0.00
208 121 0.02
209 4 0.00
210 1 0.00
211 56 0.01
213 138 0.03
214 124 0.03
215 830 0.17
216 2576 0.52
217 439 0.09
218 16 0.00
219 11 0.00
220 6 0.00
221 7 0.00
222 6 0.00
223 16 0.00
224 7 0.00
225 23 0.00
226 8 0.00
227 16 0.00
228 27 0.01
229 8 0.00
230 5 0.00
231 13 0.00
232 16 0.00
233 20 0.00
234 6 0.00
235 6 0.00
236 15 0.00
237 24 0.00
238 14 0.00
239 14 0.00
240 12 0.00
241 9 0.00
242 8 0.00
243 1 0.00
244 9 0.00
245 7 0.00
246 4 0.00
247 2 0.00
248 1 0.00
249 1 0.00
250 3 0.00
251 6 0.00
252 1 0.00
253 3 0.00
254 5 0.00
255 1 0.00
256 1 0.00
258 2 0.00
259 3 0.00
260 10 0.00
261 15 0.00
262 8 0.00
263 1 0.00
266 5 0.00
268 1 0.00
269 11 0.00
270 13 0.00
271 12 0.00
272 12 0.00
273 4 0.00
274 6 0.00
275 1 0.00
276 4 0.00
277 1 0.00
279 1 0.00
280 7 0.00
281 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAG
Found at i:111384 original size:648 final size:645
Alignment explanation
Indices: 109007--115372 Score: 4599
Period size: 647 Copynumber: 9.7 Consensus size: 645
108997 TTAAAAACAC
* * * * *
109007 TTTTAGTCTTTGAATTAAAAACTTATTTACATGA-AAATGTTTCTCTCTTGGTTCTTGAACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
109071 TTCCAAACTTGTCAAAGTTTTACGAGTTCTTTTATAACTTTGATTTCTTAAAGTATTCAAGACGA
66 TT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGA
* * * * * * * *
109136 TCCATTCCTTCTAGAAATTTTTCGAGCATTCCATGCCCGGGCAATCGCATCATTTGGTCTAAATA
130 TTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* * * *
109201 GTTTTTAATTTTGTAAAAAAGTTTTGGTCTTTGAATTTAAAACTTATTTACGTGAGAATTGTTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
109266 TCTCTTGGCTCTTGGATGAACTTTCGAACTTGTCAATCTTTTACGAGTTCTTTTATAACTTCAGT
260 TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA-T
* * *
109331 TCCTTAAAGTATTCAAGATGATCCATTCCTTCAAGCAATTTTTCGAACAATCCATGCTC-GAGAA
324 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG-GAA
* * * * * *
109395 AGCGCATCATTTAGACTAAAAAGTTTGTCATTTTGTAAACTACTTTTGGTCTTTGAA-TATAAAA
388 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTA-AAAA
* * * *
109459 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCTGAACTTATCAATCTTTT
452 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * * * *
109524 ATGAGTTCTTTTATAACTTCGATTCCTTAAACTACTCAACACGATCCATTCCTTCGAGCAATTAT
517 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-T
*** * *
109589 CCAAACATTCCATGCTCGGAAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
581 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
109654 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTAGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
109719 TTC--A---G---AAC---T----GTTCTTTTATAACATCGCTTCCTTAAAGTATTAAAGAC-AA
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGAT
* * * *
109768 TCAATTCCTTCGAGTAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAAAA
131 TC-ATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* * * *
109833 GTTTGTCATTTT-TAAACAAATTTTGGTGTTTGAATTAATAACTTATTTACGTGAGAATTGTGTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
109897 TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAATCTTTTATGAGTTCATTTATAACTTCGAT
260 TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AT
* * * * *
109962 TCCTTAAAGTATTCAGGACGATCCAATCCTTCCAGAAATTTTTTGAACATTCCATGCTC-GTGAA
324 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG-GAA
*
110026 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
388 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
* * * * *
110091 ATT-TTTACTTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTCCGAACTTCTCAAACTTTT
453 -TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
** * * * * * *
110155 AAAAGTTCTATTCTAACTTCAGTTGCTTAATGTATTCAAGACGATCAATTCCTTCGAGCAATTTT
517 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
110220 TCAAACATTCCATGCTCGAGAAATCGCATCATTTGGGCTAAATAGTTTGTCATTTTGTAAACAAG
582 T-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * *
110285 TTTTGCTCTTTGAATAAAAAAGTTATTTACGTGAGAATTGTTTCGCT-TTATGTTCTTGGATGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAA
* * * * *
110349 CTTCCGAACTTGTCAAACTTTTTCTAGTTATTTTATAACTTTGGTTCCGTAAAGTATTCAAGACG
65 CTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACG
* * * * *
110414 ATCCATTCCTTCGAGCTATTTTT-AAGCATTCCATGCTCGAGAAATCACATGATTTGGTCTAAAT
129 ATTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
* * *
110478 ATTTTGT-ACTTTTGTAAACAAGTTTTGGTCTTTGAATTAAGAACTTATTTACGTGAGAACTGTT
194 AGTTTGTCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* ** *
110542 TCTCTATTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTT
258 TCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC--TT
* * * *
110607 C-TTCCTTAAAGTATTCAGGACGATCCATTCCTTCGAGCAACTTTCCGAACATTCCATGCTCGGG
321 CATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGG
** *
110671 AAATCATATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
386 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA
* * *
110736 ACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACAAACTTCTGAACTTGTCAAATTTT
451 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTT
* * * * * * *
110801 TACGATTTCTTTGATAACTTCGGTTCCTTAAAATATTCATGGCGATACATTCCTTTGAGCAATTT
516 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* *
110866 TCTGAACATTCCATGGTCGGGAAATCGCATCATTTGGTTTAAATAGCTTT-TCATTTTGTAAACA
581 T-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACA
110930 AG
644 AG
* *
110932 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
110997 TTCCAAACTTGTCAAACTTATACGAGTTCTTTTTGTAACTTTGGTTCCTTAAAGTATTCAAGACA
66 TT-CGAACTTGTCAAACTTTTACGAGTTC-TTTTATAACTTTGATTCCTTAAAGTATTCAAGACG
* *** * ** *
111062 ATTCATTCCTTCGAGCAATTTTCCAAACATTCTGCGCTCGGGAAATCATATCATTTGGTCCAAAT
129 ATTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
* * * *
111127 AGTCTGCCATTTTGTAAACAAGTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGTGAATT-TTT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* *
111191 CTCTCTTGGTTCTTGGATGAACTTTCGAACCTT-TCAAACTTATACAAGTTCTTTTATAACTTCA
259 CTCTCTTGGTTCTTGGATGAACTTTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA
* * *
111255 CTTCCTTAAAGTATTCAAGACGGTTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTAAGGA
323 -TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGA
* * * *
111320 AATCGCATCATTTGGTCCAAATAGTTTGTCAATTTGTAAGCAACTTTTGGTCTTTGAATTAAAAA
387 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
111385 CTTATTTACGTGAGAATTATTTCTATATTGGTTTTTTGACGAACTTCTGAACATGTCAAAGTTTT
452 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
* * *
111450 ACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAGGACGATCCATTCCTTCGATCAATTTT
517 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
111515 TCGAACATTTCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTCGCCATTTTGAAAACAAG
582 T-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
** ** ** * * * *** *
111580 TTTTGGTCTTTG-ATTAATCTAC-TAGGTA--TGA-AACCG--GCATATC-AGG-AAATCG-C-A
1 TTTTGGTCTTTGAATTAA-AAACTTATTTACGTGAGAATTGTTTC-TCTCTTGGTTCTTGGACGA
* * * ** * * * * *
111634 TCATTTGATCTAATC--AGTTTGT-C-A-TT-TTTTAAACAACTTTTG-GT-CTT--TGAATT-A
64 AC-TTCGAACTTGTCAAACTTT-TACGAGTTCTTTT--ATAAC-TTTGATTCCTTAAAGTATTCA
* ** *** ** * * * *
111688 AAAC--TT-ATTTGTAT-GAG-AATTGTTTCTCTC-TT-GGTTCTTGGACGAACTTC-CGA--AC
124 AGACGATTCATTCCT-TCGAGCAATT-TTTCAAACATTCCATGC-TCGA-GAA-ATCGC-ATCAT
* * * * * *
111743 TT-GTC-AAACT--TTT-TCGAGTTCTTTTATAAC----TTCGATTCCTTAAAGTATTAAAGA-T
183 TTGGTCTAAA-TAGTTTGTC-A-TT-TTGTA-AACAAGTTTTG-GT-CTT--TGAATTAAAAACT
* * * * ***** ** * * *
111798 GGTACATTCCTTCGAGCAATTTTTTGAAAATTCCATTC-TCGA-GAA--ATCGCATTATTTGGTT
239 --TA-TTTACGT-GAG-AATTGTTTCTCTCTT-GGTTCTTGGATGAACTTTCG-A--ACTT-G-T
* * * *** * * ** * ** * * * * *
111859 TAAA-TAGTTTGTC-ACTT-TGGAAACAAGTT--TTGGTCATTGAATTAAAAAC--T-TATATAC
293 CAAACT--TTT-ACGAGTTCT-TTTATAACTTCATTCCTTAAAGTATTCAAGACGATCCAT-TCC
* ** * * * * * * * *
111916 GTC-AG-AATTGTTTC-CTC-TT-GATTCTTGGAGGAACTTC-CGA--ACTT-G--AAAAAACTT
353 TTCGAGCAATT-TTTCGAACATTCCATGC-T-CAGGAA-ATCGC-ATCATTTGGTCTAAATAGTT
* * * * * * * * * * *
111970 TGACTAGTTCTT-T-AATAA-CTTCGGTTCCTTAAAGTCTTGAAGA-TGATCCATTCCTTCGAGC
413 TGTC-A-TT-TTGTAAACAAGTTTTGG-TCTTTGAA---TTAAAAACTTAT---TTACGT-GAG-
* * * * * * *
112031 AATTTTTTGAACAATC-CAT-GCTCGT-GA--AA-TTGCATCAACTGGTCTAAA-TAGTTT--GT
466 AATTGTTT---C--TCTCTTGGTTCTTGGACGAACTT-C-TGAACTTGTC-AAACT--TTTACGA
* * ** * * * *
112087 CTT-TTTGTA-AACAAGTTTTGGTTATTGAATTAAAAACTTATTTACATGAGAATTGTTTCACTC
521 GTTCTTT-TATAAC----TTCGG---TT-CCTT--AAA-GTA-TT-CA--AG-A-CG-ATC-C-A
* * * * * * *** *
112150 TTGCTTCTTC-ACCAAACTTCTGAAC-TTCTCAAT-CTTTTACGAGCACTTTTATAACTTTGGTT
565 TT-C--CTTCGAGC-AATTTTTGAACATTC-C-ATGC---T-CGGGAAATCGCATCA-TTTGG-T
* * * *
112212 CCTTAA-AGTTTTCAAGACGATCCATTACTT-TGAGCAATT
618 -CTAAATAG-TTT------G-T-CATT--TTGTAAACAA-G
** * ** * * * * * * *
112251 TTTTGAACATTCCATGCTCCGGAAATCACATCATTT-GGTCTAAATAGTTTGTCATTTTATAAAC
1 TTTTGGTCTTTGAAT--T----AAA-AAC-TTATTTACGT-GAGA-A--TTGT--TTCTCT---C
** ** * * * *
112315 AAGATTTGG-TCTTTAAATTAAAAATT-TAA-TTACGTGAGAA-TTGTTTC-AG-TCTTGGAACT
49 -----TTGGTTC-TTGGA--CGAACTTCGAACTT--GTCA-AACTT-TTACGAGTTCTT-----T
* * * * * ** * ** ** *
112374 TGGACGAACATTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTTGTTTCCTTAAAGTA
97 T--A-TAAC-TTTG-A--T-TC---C--TTA-AAG-T-ATTCAAGACGATTCATTCCTTCGAGCA
* ** *
112438 TTCAAGACGATCCACTCCTTCGAGCAATTTCTCGAACATTTCATGCTCGAGAAATTGCATCATTT
146 AT--------T----T--TTC-A--AACAT-TC---C-----ATGCTCGAGAAATCGCATCATTT
* * * *
112503 GGTCTAAATAATTTGTAATTTTGAAAACAAGTTTTAGTCTTTGAATTAAAAACTTATTTACGTGA
185 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGA
* * * ** *
112568 GAATTGTTTCTCTCTTGGTTCTTAGAAGAACTTTCGAACTTATCAAACTTTTAAAAGTTATTTTA
250 GAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA
** * * * *
112633 TAACTTTGGTTCCTTGAAGAATTCAAGACGATCCATTCCTTCGAGAAATTTTTTGAACATTCCAT
315 TAAC-TTCATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCAT
* * * * * * * * *
112698 GCTCGGGAAATCACATCATTTGGTCAAAATAATTTATAATTTTGAAAACATGTTTTAGTCTTTGA
379 GCTCAGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGA
* * * **
112763 ATTAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACGTCCCAACTTGTC
444 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* * ** * * *
112828 AAACTTTTATGAGTTCTTTTGTAACTTCAATTCTTTAAAGTATTCAAGATGATCCATTCCTTCAA
509 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * * * *
112893 GAAATTTTCCGAACATTTCATGCTCGGGAAATCGCATCACTTGGTCTGAATAGTATGTCATTTTG
574 GCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
112958 TAAACATG
638 TAAACAAG
* * * * * * **
112966 ATTTGGTCTTTTAATTAACAACTTATTTACATAAGAATTGTTTCTTTCTTTTTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * ** *
113031 TT----CTAGTCAAACTTTTACAAGTTCTTTTATAACTTCAATTCCTTAAAGTATTTAAGACGA-
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGAT
* * * * * *
113091 T--TTCCTTCGAGCAATTTTTTGAAA-ATTTCATGCTCCAAAAATCGCATCACTTGGTCAAAATA
131 TCATTCCTTCGAGCAA-TTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
** * *
113153 -TTTAGTCATTTTGTAAACAAGTTTTCATATTTGAATTAAAAACTTATTTACGTGAGAATAGTTT
195 GTTT-GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
113217 CTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA
259 CTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-A
* * * *
113282 TTCCTTAAAGTATTCAAGACGA-CCGATTCCTTTGAGCAATTTTTCAAACATTCTAGGCTCAGGA
323 TTCCTTAAAGTATTCAAGACGATCC-ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGA
* *
113346 AATCACATCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
387 AATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * **
113411 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTGC-CAACTGGAAAAAACTT
452 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTG-TCAAACTT
* * * * *
113475 TTACTAGTTCTTTTATAACTCCGGTTCCTTAAAGTAATCCAGAGGATCCATTCCTTCGAGCAATT
515 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
* * ** * *
113540 TTTTGAACATTCCATGCTCAGGAAATCGAATCATTTCATCTAAATAATTTGTAATTTTGTAAACA
579 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
113605 AA
644 AG
* * *
113607 TTTTAGTCTTTGAATTAAAAACTTATTTATGTGAGAATTCG-TTCTCTCTTGGTTCTTTGACGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAA
* *
113671 CTTCAGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTTGATTCCTTAAAGTATTCAAGATG
65 CTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACG
* * ** * * * * *
113736 ATTCATTCCTTTGAGCAA-TTTTCGAGTATTCCATGCTCGGGAAATCACATCAATTAGTGTAAAT
129 ATTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
** * * * *
113800 AGTTTGTCATTTTGTAAGGAACTTTTGATCTTTGAATTAAAAACTTATTTATGTGAGACTTGTTT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * *
113865 CTCT-TT-GTTCTTAGATGAACTTTTGAACTTGTCAAACTTTTATGAGTTCTTTTAAAACTTTGA
259 CTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCA
* * * **
113928 TTCCTTAAAGTAGTCAAGACGATCCATTCCTTCGAGTAATTTTTTGAACATTCCATGCTTGGGAA
323 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAA
* * * * * * *
113993 ATCACATTAATTGGTATAAATAGTTTGTCATTTTGTAAGCAACTTTTGGTATTTGAATTAAAAAC
388 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
* * *
114058 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGATGAACTTCTGAAGTTGTCAAACTTTTA
453 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTA
* * * *
114123 CGGGTTCTTTTATAAATTCGCTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTTT
518 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * **
114188 CGAACAATCCATGCTCGAGAAATTGCATCATTTCATCTAAATAGTTTGTCATTTTGTAAACAAG
583 -GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * **
114252 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCCTGGTTCTTGGATAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * *
114317 TTTCGAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGA
66 -TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGA
* * * ** **
114382 TCCATTCCATCGAGAAATTTTTTGAACATTCCATGCTTAAGAAATCGCATCATTTGGTCTAAATA
130 TTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* * * * * * *
114447 GTTTGTC-GTTTGTAGACATGATTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAGTATTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
114511 TCTCTTTGTTCTTGGATGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGA
260 TCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-A
* * * * *
114575 TTCCTTAAAGTATTCAAGACAATACATTCCGTCGAGCAATTTTTCGAACATTCCATACTCGGGAA
323 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAA
* * * *
114640 ATCGCATCATTTGGTCTAAGTAGTTTGTCA-TTTGTAAACAAGTTTTGGTCTGTGAATTGAAAAT
388 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
* * **
114704 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGAAAAAACTTTT
453 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG-TCAAACTTTT
* * * * * * * *
114769 ACAAGTTGTTTTATTACTCCGGTTCCTTAAAGAATACAAGACGATCCATTACTTTGAGCAATTTT
517 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTT
** * * * * *
114834 TTGAACATTCCATGCTTTGAAAATCGCATCATTTGATCTAAATAATATGTAATTTTGTAAACAAG
581 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * *
114899 TTTTAGTCTTTGAATTAAAAACTTATTTACATGAGAATTCTTTCTATCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * * *
114964 TTTCGAACTAATCAAACTTTTACGAGTTCTTTTATAGCTTCGATTTCTTAAAATATTCATGACGA
66 -TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGA
* * * * ** * * * *
115029 TTTATTTCTTTGAGAAATTTTTTGAACATTCCATTCTCCAGAAATCGCATCAATTGGTTTAAATA
130 TTCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
115094 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
115159 TCTATTGGTTCTTGGACGAACTTTCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
260 TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA-T
** * * * * * * *
115224 TCCTTAAAGTATTCAAGGTGACCCATTCCATCAAGCAATTCTCCAAACATTCCATGCTC-GAAAA
324 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG-GAA
* * * * *
115288 ATCGCATCATTTGGTTTGAATAGCTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAGTTAAAAAC
388 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC
*
115353 TTATTTATGTGAGAATTGTT
453 TTATTTACGTGAGAATTGTT
115373 AATGCGAGCT
Statistics
Matches: 4494, Mismatches: 872, Indels: 704
0.74 0.14 0.12
Matches are distributed among these distances:
623 4 0.00
624 17 0.00
625 18 0.00
626 17 0.00
627 32 0.01
628 32 0.01
629 24 0.01
630 15 0.00
631 458 0.10
632 144 0.03
633 21 0.00
634 14 0.00
635 23 0.01
636 11 0.00
637 6 0.00
638 1 0.00
639 18 0.00
640 300 0.07
641 165 0.04
642 11 0.00
643 6 0.00
644 11 0.00
645 298 0.07
646 440 0.10
647 979 0.22
648 707 0.16
649 160 0.04
650 5 0.00
651 1 0.00
652 3 0.00
653 5 0.00
654 8 0.00
655 12 0.00
657 1 0.00
658 9 0.00
659 6 0.00
660 3 0.00
661 6 0.00
666 9 0.00
667 2 0.00
668 7 0.00
669 5 0.00
670 6 0.00
671 13 0.00
672 2 0.00
673 1 0.00
674 1 0.00
676 2 0.00
677 1 0.00
678 4 0.00
679 1 0.00
680 5 0.00
681 4 0.00
682 2 0.00
683 1 0.00
684 3 0.00
686 1 0.00
687 5 0.00
688 7 0.00
689 7 0.00
690 1 0.00
692 5 0.00
694 5 0.00
695 2 0.00
698 2 0.00
699 2 0.00
700 1 0.00
701 1 0.00
702 7 0.00
703 1 0.00
704 7 0.00
705 5 0.00
706 3 0.00
707 7 0.00
708 3 0.00
709 2 0.00
711 3 0.00
712 6 0.00
713 1 0.00
715 11 0.00
716 4 0.00
717 5 0.00
718 1 0.00
719 1 0.00
721 1 0.00
723 2 0.00
725 6 0.00
726 4 0.00
727 4 0.00
728 10 0.00
729 5 0.00
730 3 0.00
731 15 0.00
732 9 0.00
733 3 0.00
734 2 0.00
735 1 0.00
736 2 0.00
737 2 0.00
738 1 0.00
739 2 0.00
740 1 0.00
741 2 0.00
742 2 0.00
743 3 0.00
744 3 0.00
745 3 0.00
746 2 0.00
747 2 0.00
749 3 0.00
750 5 0.00
751 17 0.00
752 12 0.00
753 17 0.00
754 43 0.01
755 10 0.00
756 16 0.00
757 19 0.00
758 32 0.01
759 21 0.00
760 14 0.00
761 15 0.00
762 14 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (645 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGACGAT
TCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCATTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAA
CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
Found at i:119681 original size:216 final size:216
Alignment explanation
Indices: 118505--127923 Score: 8811
Period size: 216 Copynumber: 43.5 Consensus size: 216
118495 GGCCGTATCA
* * * *
118505 TTTGTTCTTTAAATTTAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
118569 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * ** *
118634 ACATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAATCACATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
* *
118699 TTTGTCATTTTATGAACAAGT
196 TTTGTCATTTTGTAAACAAGT
*
118720 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * *
118785 TGC-GAACTTGAAAAAACTTTTACTAGTTCTTTTATAAC-TCTGATTCCTTAAAGTATTCCAGAC
66 T-CTGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGAC
* * * * * *
118848 GATCTATTCCTTCGAGCAATTTTCCGAACATTCCATGCT-TGGGAATCAAATCATTTCGTCTAAA
128 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAA
*
118912 TA-TTTGTAATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * *
118935 TTTAGTAGTC-TTGAAATTAAAAACTTAATTACGCGAGAATTATTTCTCTCTTGGTTCTTGGAAG
1 TTT-G-A-TCTTTG-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
118999 AACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTAAAACTTCGATTCCTTAAAGTATTCAAGA
62 AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * ** * *
119064 CAATCCATTCCTTCGAGCAATTTTTTGAACATTCTGTGCT-AGGGAAATCACATCAATTGGTATA
127 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCA-GGAAATCACATCATTTGGTCTA
* *
119128 AATAGTTTGTCATTTTGTAAGCAACT
191 AATAGTTTGTCATTTTGTAAACAAGT
* * *
119154 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTGGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
119217 TCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGCTTCCTTAAAGTATTCAGGACAAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * *** * *
119282 CCATTCTTTCGAGCAATTTT-TCGAACATTCCATGCTCGGGGAAATTGTATTATTTGGTTTAAAT
131 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC-AGGAAATCACATCATTTGGTCTAAAT
**
119346 AGTTTGTCATTTTGTAAACATCT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * *
119369 TTTGTTATTTAAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTTTTGGTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
119434 TCTGAACTTGTCAAACTGTTACGAGTTCTTTTATAAATTTGCTTCCTTACAGTATTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * * * *
119499 CCATTCGTTCGAGCAAATTTCTGAACAATCCATGCTCAAGAAATTACTTCATTTGGTCTAAATTG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
119564 TTTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * * *
119585 TTTGATCTTTGAATTAAAAACTTATTTGCATGAGAATTGATTCTCTCTTGGTTCTTAGACAAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * ** * * *
119650 TTTGAACTTATCAAACTTTTAAAATTTCTTTTATAAGTTTGATTCCTTAAAGTATTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* *
119715 CCATTCCTTCGAGAAATTTT-TCGAACATTCCATACTCAGGAAATCACATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATA
*
119779 GTTTGTCATTTTGTAAACATGAT
195 GTTTGTCATTTTGTAAACAAG-T
* ** * * *
119802 TTTG-TCATTGAATTAAAAACTTATTTAAATGACAATTATTTCTCTCTTTGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* **
119866 TCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGCTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * ** * *
119931 ACATCCCTTCGAGTAATTTTTTGAACATTCCATGCTTGGGAAATCGCATCATTCGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
119996 TTTGTCATTTTGTAAACAAGT
196 TTTGTCATTTTGTAAACAAGT
* * * *
120017 TTTGGTCTTTGAATTTAAAACTTCTTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * *
120082 TTTGAACTTGAAAAAACTTTTGCTAGTTCTTTTATAAC-TCTGTTTCCTTAAAGTATTCAAGACG
66 TCTGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACG
* * * * * *
120146 ATCCATTACTTCGAGCAATTTTCTGAACATTTCATGCTCTGGAAGTCGCATCATTTTGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
* * *
120211 AATATGTAATTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * *
120234 TTT-AGTTTTTGAATTAAAAACTTATTTACATGAAAATT-CTTCTCTCTTGGTTCTTGGTCGAAC
1 TTTGA-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
120297 TT-TCAAACTTGTCAAACTTTTACGAGTTATTTTATAGCTTCGATTTCTTAAAATAATCATGACG
65 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * ** *
120361 ATCCATTCCTTCGAGAAATTTTCTGAACAGTCCATGCTTGGGAAATCACATCAATTGGTC-AAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
* *
120425 AGTTTGTCATTTTGTGAACAAAT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
120448 TTTGGAT-TTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTTCGTGGATGAAC
1 TTT-GATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * *
120512 TT-TCGAGGTTCTCAAACTTTTACGAGTTCTTTTACAACTTCAATTCCTTAAAGTATTCAAGGCG
65 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
** * *
120576 ATCCATTCCTTCGAGCAA--TTCCAAACATTCCATGCTC-GAAAAATCACATCATTTGGTCTGAA
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAA
120638 TAGTTTGTCATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * ** *
120662 GTTGGTCTTTGAATTAAAAACTTACTTACGTGACAATTG-TT-TCTCTTGGTTCTTGGAATAAAT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * ** * * *
120725 TCCAAACTTGTGAAACTTTTTTGAGTTCTTTTATAACTTCGCTTCCTTAAGGTATTCAGGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
** * ** * *
120790 CCATTCCTTCGAGCAATTTTCCAAACAATCCATGCTC-GGAAAAATCGTATTACTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGG--AAATCACATCATTTGGTCTAAAT
*
120854 AGTTGGTCATTTTGTAAACATA-T
194 AGTTTGTCATTTTGTAAACA-AGT
* * * *
120877 TTTGTTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * ** * * * * *
120942 ACCAAACTTGTCAAAATTTTATGTGAGAATTATTTT-TCTCTT-GGTT-TTTGGACGAACTTC-A
66 TCTGAACTTGTCAAACTTTTA--CGAG--TTCTTTTATAACTTCGATTCCTT-AAAGTA-TTCAA
* *** * * * * * * ***
121003 GAACTTG-TCAAACTT--TTACGAGTTCTTTTAT-AA-ATTTGCTTCCTTAAAGTTTTCAAAACG
125 G-AC--GATC-CA-TTCCTT-CGAGCAATTTTCTGAACA-TTCCATGC-TCAGGAAATC---AC-
*** * * * * ** *
121063 ATCCATTCCTTC-AAGTAATTTTTCGAACATTCCATGCTCGAGAA--
178 AT-CATTTGGTCTAAAT-A-GTTT-G-TCATT--TTG-TAAACAAGT
* * ** * ** * * **
121107 ATCGCATCATTTCG--TCTAAATAGTTTGTCATTT-TGT-A-AACAAGTTT-TGGTCTTTG-AAT
1 TTTG-ATC-TTT-GAAT-TAAA-A-ACT-T-ATTTACGTGAGAA-TTGTTTCT-CTCTTGGTTCT
** * ** * ** ** * * *
121165 T--AAAAACTTATTTACGTGAGAATTGTTTCTATCTTG-GTT-TTTTGACGAACTTCTGA-ACAT
56 TGGACGAACTTCTGAACTTGTCAA-ACTTT-TA-C--GAGTTCTTTT-A-TAACTTC-GATTCCT
* * * * * ** * **** * * *
121225 GTCAAACTTTTACGAGTTCTTTTATAAATTTGCTTCCTTAAAGTTTTCAAGAAGA-TCCATTCCT
113 -T-AAAGTATT-CAAG-AC---GATCCA-TTCCTTCGAGCAA-TTTTC-TGAACATTCCA-TGC-
* * * * * **
121289 TCGAGCAATTTTTTGAACAACCCTTGCTAGAGAAATCGCGTCATTTCGTTTAAATAGTTTGTCAT
166 TC-AGGAA----AT-CAC-ATCATT--T-G-G---T--C-T-AAA-----T----AGTTTGTCAT
121354 TTTGTAAACAAGT
204 TTTGTAAACAAGT
* * *
121367 TTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * * *
121432 TGC-GAACTTGAAAAAAC-TTTCCTAGTACTTTTATAACTCCGATTTCTTAAAGTATCCCAGACG
66 T-CTGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * * ** * *
121495 ATCCATTCCTTCAATCAATTTT-TCCAACATTCCATTCTTGGGAAATCAAATCATTTCGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAA
* *
121559 TAATTTGTAATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * *
121583 TTTAATCATTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTCGTTCTTGAACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
121648 TCCGAACTTGTCAAACTTATACGAGGTT-TTTTAAAACTTTGATTTCATAAAGTATTCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* *** *
121712 TCCATTCCTTCGAGCAATTTT-TCAAACATTCCATGCTCAAGGAAATTGTATTATTTGGTCTAAA
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC-AGGAAATCACATCATTTGGTCTAAA
*
121776 TAATTTGTCATTTTGTAAACACA-T
193 TAGTTTGTCATTTTGTAAACA-AGT
* * * * * * *
121800 TTTGTTTTTTAAATTAAAAACTTATTTATGTGAGAATTATTTTTCTCTTGGTTTTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
121865 TCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGCTTCCTTAAAGT-TTCCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-CAAGACGA
* * * * * * * *
121929 TCCATTCCTTCAAGC-ATTTTTTCGAACAATCAATACTC-GAGAAATTACATCATTTCGTTTAAA
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAA
121992 TAGTTTGTCATTTTGTAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * * *
122016 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTATCTTGGTTTTTTGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
122081 TCCGAACATGTCAAACTTTTACGAGTTCTTTTATAAATTCGCTTACTTAAAGTTTTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * **
122146 TCATTCCTTCGAGCAATTTT-TCAA-ATAATCCATGCTC-GAGAAATCACATCATTTCATCTAAA
131 CCATTCCTTCGAGCAATTTTCTGAACAT--TCCATGCTCAG-GAAATCACATCATTTGGTCTAAA
*
122208 TAGTTTGTCATTTTGCAAACAAGT
193 TAGTTTGTCATTTTGTAAACAAGT
* * *
122232 TTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * * *
122297 TGC-GAACTTGAAAAAAC-TTTCCTAGTACTTTTATAACTCCGATTCCTTAAAGTATCCCAGACG
66 T-CTGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * ** *
122360 ATCCATTCCTTCAAGCAATTTTTTGAACATTCCTTGCTTGGGAAAATCGA-ATCATTTCGTCTAA
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGG-AAATC-ACATCATTTGGTCTAA
* * *
122424 ATAATTTATAATTTTGTAAACAAGT
192 ATAGTTTGTCATTTTGTAAACAAGT
* * *
122449 TTTAATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTCGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
122514 T-TCAAACTTGTCAAACTTTTACAAGTTTTTTTAAAACTTCGATTCCATAAAGTATTCAAGACGA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
*** *
122578 TCCATTCCTTCGAGCAAATTTTC-GAACATTCCATGCTCAAGGAAATTGTATTATTTGGTCTAAA
130 TCCATTCCTTCGAGC-AATTTTCTGAACATTCCATGCTC-AGGAAATCACATCATTTGGTCTAAA
*
122642 TAATTTGTCATTTTGTAAACACA-T
193 TAGTTTGTCATTTTGTAAACA-AGT
* ** * ** * * * *
122666 TTTGTTCTTCAAATTAAAGACTTATTTTTGTGAGAATTATTTTTCTCTTGGTTTTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
122731 CCAGAACTTGTTAAACTTTTACGAGTTCTTTTATAAATTCGCTTCCTTAAAGT-TTCCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-CAAGACGA
* * * *
122795 TCCATTCCTTCGAGCAATTTT-TCGAACAATCCATGCTCAAGAAATCGCATCATTTCGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
122859 AGTTTGTCATTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * *
122882 TTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTTTTTGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
122946 TCTGAACATGTCAAACTTTTACGAGTTCTTTTATAAATTCGCTTCCTTAAAGTTTTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * **
123011 CCATTCCTTCGAGCAATTTT-TCGAACAATCCATGCTC-GAGAAATCGCATCATTTCATCTAAAT
131 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAAT
123074 AGTTTGTCATTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
123097 TTTGGA-CTTTGAATTGAAAACTTATTTACGTAAGACTTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTT-GATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * * *
123161 TT-TCGAACTTGAAAAAACTTTTGCTAGTTCTTTTATAACTCCGTTTCCTTAAATTATTCAAGAC
65 TTCT-GAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
** * ** * * * * *
123225 GATCCATTATTTCAAGCAATTTTCCAAACATTCCATGCTCTGTAATTCGCATCTTTTGGTCTAAA
128 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAA
** *
123290 TA-AATGTAATTTTGTAAACAAGTT
193 TAGTTTGTCATTTTGTAAACAAG-T
* * * * *
123314 TTTAGA-CTTTGAATTCAAAACTTATCTACATGAGAATTCTTTCTCTCTTGGTTCTTGGTCGAAC
1 TTT-GATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
123378 TTCAGAACTTGTCAAACTTTAACAAGTTCTTTTATATCTTCAATTTCTTAAAATATTCATGACGA
65 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * ** * * *
123443 CCCATTCCTTCGAGAAATTTTCT-AAGCATTCCATGCTTGGGAAATCACAACAATTGGTCTAGAT
130 TCCATTCCTTCGAGCAATTTTCTGAA-CATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
123507 AGTTTGTCATTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * * *
123530 TTTGGTCTTTGAATTTATAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * *
123595 TCCAAAGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* ** * * * * * *
123660 CCATTCCTTCGAGCAATTCTCCAAATATTCCATGCTC-GAAAAATCGCATCAGTTGATCTGAATA
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAATA
*
123724 GTTTGTCATCTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
123746 TTTGGTCTTTAAATT--AAA---A---AC-------TTG-TT-TCTCTTAGTTTTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
123794 T-TCGAACTTGTCAATCTTTTATGACTTCTTTTATAACTTCGCTTCCTTTAAAGTATTCAGGACG
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC-TTAAAGTATTCAAGACG
* * * ** *
123858 ATCCATTCCTTCAAACAATTTTCCGAACATTCCATGCTTTGGAAATCACATCAATTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
123923 AGTTTGTCATTTTGTAAACAAGTT
194 AGTTTGTCATTTTGTAAACAAG-T
*
123947 TTTG-TCTTTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * *
124011 TCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * * * *
124076 CGATTCTTTCGACCAATTTTTTGAACATTTCATGCTC-GAGAAATCGCATCAATTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAATA
*
124140 GTTTGTCATTTTGTAAGA-AACT
195 GTTTGTCATTTTGTAA-ACAAGT
* * * * * **
124162 TTTGGTCATTAAATTAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTTAACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
124227 TCTGAACTTGTCAAACTTCTACAAG-TCCTTTATAACTTCGATTCCTTAAAGTATTCAAGACGTT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * *
124291 CCGTTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCACATCAATTGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
*
124356 TTTGTTATTTTGTAAACAAGTT
196 TTTGTCATTTTGTAAACAAG-T
*
124378 TTTG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * * *
124442 TCCGAACTTGTCAAACTTTTTCAAGATCTTTTATAAATTTGCTTCCTCAAAGTTTTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* **
124507 CCATTCCTTCGAGCAATTTGT-TGAACAATCCATGCTC-GAGAAATCGTATCATTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTT-TCTGAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAAT
*
124570 AGTTTGTCATTTTGTAAACTAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * *
124593 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGAAGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * *
124658 T-TCGAACTTGTCAGACTTTTAAAAATTCTTTTATAACTTCGGTTCGTTAAAGTATTCAAGACGA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * ** *
124722 TCTATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCAACAAATTACATCATTTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATA
* * * *
124787 GTTTTTAATTTTGTAAACATGA
195 GTTTGTCATTTTGTAAACAAGT
* * * * *
124809 TTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCACTCTTTGTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
124874 TTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTGAAGAGCATTCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGA
** * ** * * *
124939 TAAATTCCTTCGAGCAATTTTCTAAACATTCCATGCTTGGGAAATAAAATCATTTGGTATAAATA
130 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATA
125004 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
125026 TTTGGTCTTTGAATTGGAAAA-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
1 TTTGATCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* ** * * * *
125090 TTCCGAACTTGAAAAAAACTTTTACTAGTTCTTTTATAACTCCGGTTCCATAAAGTATTCAAG-C
65 TTCTGAACTTG--TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
* * ** * *
125154 TGATACATTACTTCGAGCAATTTT-TCGAACATTCCATGCTTTGAAAATCGCATCATTTGGTCTA
128 -GATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTA
* * **
125218 AATAATATGAAATTTTGTAAACAAGTT
191 AATAGTTTGTCATTTTGTAAACAAG-T
* * * *
125245 TTTG-TCTTTGAATAAAAAACTTATTTACGTGGGAATTCTTTCTCTCTTGGTTTTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
125309 TCCGAAGC-TGTCAAACTTTTACGAGTTCTTTAATAACTTCGGTTCCTTAATGTATTCAAGGCTA
66 TCTGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* ** * * *
125373 TCTATTCCTTCGAGCAATCCTC-CAGACATTCCATGCTCAGAAAATCACATCATTTGGTCTGAAT
130 TCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
125437 AGTTTGTCATTTTGTAAACAAGT
194 AGTTTGTCATTTTGTAAACAAGT
* * ** * *
125460 TTTGGTCTTTGAATTAAAAATTTATTTATTTGAGGATTG-TT-TCTCTTGGTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* ** * * * *
125523 TCCGAACTTGTCAAACTTTTATAAGTTCTTTCATAACTTCGCTTCCTTAAAGTATTCAGGACGGT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * * * * * *
125588 CCGTTCCTTTGAGCGATTTACTGAACATTCCATGCTCGGGAAATCATATTATCTAGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
* * **
125653 TTGGTCATTTTGGAAACATCT
196 TTTGTCATTTTGTAAACAAGT
* * * * *
125674 TTTGTTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
125739 T-TCGAACTTGTCAAA-TTTTATGAGTT-TTTTATAACTTTGCTTCCTTAAAGTTTTCAAGACGA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * ** * *
125801 TCCATTCCTTCGAGAAATTTT-TCGAACATTCTATGCTC-GAGAAATGGCATCATTTGGACTACA
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAA
* *
125864 TTGTTTGTCATTTTGTAAACAATT
193 TAGTTTGTCATTTTGTAAACAAGT
* * *
125888 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTTGGACAAAC
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAAC
* ** * * *
125953 TT-TCGAACTTGTCAAATTTTTAAAAGTTTTTTTATAACTTCGGTTCCTTGAAGTATTCAAGACG
65 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * * * * *
126017 ACCCATTCCTTTGAGAAATTTT-TCGAACATTCCGTGCTCGGGAAATCGCATCATTTGGTTTAAA
129 ATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAA
* * *
126081 TAGTTTGTCAATTTGTAAACATGA
193 TAGTTTGTCATTTTGTAAACAAGT
* * **
126105 TTTGATCTTTGAATTAAGAACTTATTTACATGAGAATTGTTTCTCTCTTTTTTTCTTGGACGAAC
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAAC
* *
126170 TTCTCAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
65 TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * *
126235 TACATTTCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCAGATCAATTGGTCTAAATA
130 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATA
126300 GTTTGTCATTTTGTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
126322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
126387 T-TCGAAGTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCAA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * * * * *
126451 TCCGTTCCTTCGAGCAATTCTCTAAACATTCCATGCTCAGAAAATCGCATCAGTTGGTTTGAATA
130 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATA
* *
126516 GTTTCTCATTTTGTAAACAAAT
195 GTTTGTCATTTTGTAAACAAGT
** * * *
126538 TTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTTGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
126601 TCTAAACTTGTCAAACTTTTATGACTTATTTTATAACTTCGCTTCCTTTAAAGTATT-AAGGACG
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC-TTAAAGTATTCAA-GACG
* * * ** *
126665 ATCCATTCCTTCGAGCAATTTTCCGAACATTCGATGCTCGGGAAATCGTATTATTTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
* * * **
126730 AATTGGTCATTTTGGAAACATCT
194 AGTTTGTCATTTTGTAAACAAGT
* * * * * * * *
126753 TTTGTTCTATAAATTAAAAACTTATTTAAGTAAGAATTATTTCTCTCTTGCTTCTTGGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
126818 T-TCGAGCTTGTCAAA-ATTTATGAATTCTTTTATAACTTCGCTTCCTTAAAGTTTTCAAGACAA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * ** * **
126881 ACCATTCCTTCGAGAAATTTT-TCGAACATTCCATTAT-TGAGAAATGGCATCATTTGGTCTAAA
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAG-GAAATCACATCATTTGGTCTAAA
* *
126944 TTGTTTGTCATTTTGTAAACAATT
193 TAGTTTGTCATTTTGTAAACAAGT
* * * *
126968 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTAGATGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * ** * * * * * *
127033 TC-CAAATATGTCAAACTTTTAAAAGTTC-TTTACAACTCCGGTTCCTTGAAGTAATCAAGATGA
66 TCTGAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * *
127096 ACCATTCCTTGGAGAAATTTT-TCGAACATTCCATGCTCTGGAAATCACATCATTTGGTTTAAAT
130 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAAT
* * * *
127160 AGTTTGTCATTTCGTAAATATGA
194 AGTTTGTCATTTTGTAAACAAGT
* ** * *
127183 TTTGATCTTTGAATTAAAAACTTATTTACATGAGAATCATTTCTCTCTTTGTTATTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
127248 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * * *
127313 ACATTCGTTCGAGCAATTTTCTAAACATTCCATGCTTC-GGAAATCGCATAATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTCTGAACATTCCATGC-TCAGGAAATCACATCATTTGGTCTAAATA
* *
127377 GTTTGCCATTTTCTAAACAAGT
195 GTTTGTCATTTTGTAAACAAGT
* * *
127399 TTTGATCGTTGAATTAAAAACTTATTTTATGTGAGAATTGTTTCTCTCTTGTTTCTTGGAC-AAC
1 TTTGATCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * * * *
127463 TTAC-GAACTTGAAAAAACTTTTCCTAGTTCATTTATAACTCCGGTTCCTTAAAGTATTCCAA-A
65 TT-CTGAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-CAAGA
* * * * * * *
127526 CAATTCATTCCTTCCAGGAATTTT-TCGAACATTCCATACTC-GAGAAATCAAATCATTTCGTCT
127 CGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCAG-GAAATCACATCATTTGGTCT
* * *
127589 AAATAATTTGTAATTTTGTAAAAAAGT
190 AAATAGTTTGTCATTTTGTAAACAAGT
* * * * * **
127616 TTTAATCTTTGAATTAAAAACTTTTTTACGTGAAAATTCTTTGTCTCTCCGTTCTTGGACGAACT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
127681 TCCGAGCTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGATTCCATAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
* * * *
127746 CCTTTCCTTCGAGCAATTTT-TCGAACATTCCATGCTCGGGGAAATCATATTATTTGGTCTAAAT
131 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTC-AGGAAATCACATCATTTGGTCTAAAT
* * **
127810 AATTTGTCTTTTTTGTAAACACCT
194 AGTTTGTC-ATTTTGTAAACAAGT
* * *
127834 TTTGTTCTTTAAATTAAAAAC----TTA----A-AATTGTTTCTCTCTTGGTTCTTGGACGAAGT
1 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
127890 TCTGAACTTGTCAAACTTTTCCAAGATCTTTTAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTAT
127924 GAATTTGTCA
Statistics
Matches: 7573, Mismatches: 1345, Indels: 578
0.80 0.14 0.06
Matches are distributed among these distances:
199 56 0.01
200 99 0.01
201 9 0.00
202 3 0.00
205 1 0.00
208 4 0.00
209 55 0.01
210 1 0.00
211 1 0.00
212 84 0.01
213 40 0.01
214 622 0.08
215 1302 0.17
216 2689 0.36
217 1946 0.26
218 281 0.04
219 71 0.01
220 11 0.00
221 18 0.00
222 11 0.00
223 3 0.00
225 6 0.00
226 6 0.00
227 3 0.00
228 1 0.00
229 5 0.00
230 6 0.00
231 19 0.00
232 14 0.00
233 12 0.00
234 13 0.00
235 7 0.00
236 11 0.00
237 4 0.00
238 7 0.00
239 2 0.00
240 6 0.00
241 2 0.00
242 10 0.00
243 3 0.00
244 8 0.00
245 11 0.00
246 9 0.00
247 5 0.00
250 1 0.00
251 4 0.00
252 5 0.00
253 4 0.00
254 10 0.00
255 6 0.00
256 16 0.00
257 8 0.00
258 12 0.00
259 15 0.00
260 5 0.00
261 5 0.00
262 1 0.00
263 3 0.00
264 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCAGGAAATCACATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGT
Found at i:120255 original size:649 final size:647
Alignment explanation
Indices: 118505--127923 Score: 9582
Period size: 649 Copynumber: 14.5 Consensus size: 647
118495 GGCCGTATCA
* * * *
118505 TTTGTTCTTTAAATTTAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
118569 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* * * *
118634 ACATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAATCACATCATTTGGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAG
* * *
118699 TTTGTCATTTTATGAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
196 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * ** *
118764 CTCTTGGCTCTTGGACGAACTTGCGAACTTGAAAAAACTTTTACTAGTTCTTTTATAAC-TCTGA
261 CTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTTTTACTAGTTCTTTTATAACTTC-GC
* * * *
118828 TTCCTTAAAGTATTCCAGACGATCTATTCCTTCGAGCAATTTTCCGAACATTCCATGCT-TGGGA
324 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGAA
* * * *
118892 ATCAAATCATTTCGTCTAAATA-TTTGTAATTTTGTAAACAAGTTTTAGTAGTCTTGAAATTAAA
389 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GT-CT-TTG-AATTAAA
* ** * * **
118956 AACTTAATTACGCGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTTTGAACTTGTCAAACTT
450 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
* * *
119021 TTACGAGTTCTTTTAAAACTTCGATTCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATT
515 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* ** * * * *
119086 TTTTGAACATTCTGTGCTAGGGAAATCACATCAATTGGTATAAATAGTTTGTCATTTTGTAAGCA
580 TTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
119151 ACT
645 AGT
* *
119154 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTGGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
119217 TCTGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGCTTCCTTAAAGTATTCAGGACAAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* * * * * *
119282 CCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGGAAATTGTATTATTTGGTTTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAATA
** * * * *
119347 GTTTGTCATTTTGTAAACATCTTTTGTTATTTAAATTAAAAACTTATTTATGTGAGAATTGTTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * *
119412 TCTTTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTGTTACGAGTTCTTTTATAAATTTGCT
260 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGCT
* * * * **
119477 TCCTTACAGTATTCAAGACGATCCATTCGTTCGAGCAAATTTCTGAACAATCCATGCTCAAGAAA
325 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGAAA
* * *
119542 TTACTTCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACT
390 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATTAAAAACT
* * * * ** * *
119607 TATTTGCATGAGAATTGATTCTCTCTTGGTTCTTAGACAAACTTTTGAACTTATCAAACTTTTAA
454 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * *
119672 AATTTCTTTTATAAGTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGAAATTTTTC
519 AAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * *
119737 GAACATTCCATACTCAGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGAT
584 GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-T
* ** * * *
119802 TTT-GTCATTGAATTAAAAACTTATTTAAATGACAATTATTTCTCTCTTTGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * **
119866 TCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGCTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* * * * *
119931 ACATCCCTTCGAGTAATTTTTTGAACATTCCATGCTTGGGAAATCGCATCATTCGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAG
* *
119996 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTAAAACTTCTTTACGTGAGAATTGTTTCT
196 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* ** ** * *
120061 CTCTTGGTTCCTGGACGAACTTTTGAACTTGAAAAAACTTTTGCTAGTTCTTTTATAAC-TCTGT
261 CTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTTTTACTAGTTCTTTTATAACTTC-GC
* *
120125 TTCCTTAAAGTATTCAAGACGATCCATTACTTCGAGCAATTTTCTGAACATTTCATGCTCTGGAA
324 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGAA
* * * * * * *
120190 GTCGCATCATTTTGTCTAAATAATATGTAATTTTGTAAACAAGTTTTAGTTTTTGAATTAAAAAC
389 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAAAAAC
* * * * *
120255 TTATTTACATGAAAATT-CTTCTCTCTTGGTTCTTGGTCGAACTTTCAAACTTGTCAAACTTTTA
453 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * * *
120319 CGAGTTATTTTATAGCTTCGATTTCTTAAAATAATCATGACGATCCATTCCTTCGAG-AAATTTT
518 CAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * * *
120383 CTGAACAGTCCATGCTTGGGAAATCACATCAATTGGTC-AAATAGTTTGTCATTTTGTGAACAAA
583 C-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
120447 T
647 T
* * * *
120448 TTTGGAT-TTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTTCGTGGATGAAC
1 TTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
** * * ** *
120512 TT-TCGAGGTTCTCAAACTTTTACGAGTTCTTTTACAACTTCAATTCCTTAAAGTATTCAAGGCG
65 TTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACG
* * * ** * *
120576 ATCCATTCCTTCGAGCAA--TTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTGAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAT
* * *
120639 AGTTTGTCATTTTGTAAACAAGTGTTGGTCTTTGAATTAAAAACTTACTTACGTGACAATTG-TT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
** * * * *
120703 -TCTCTTGGTTCTTGGAATAAATTCCAAACTTGTGAAACTTTT-TTGAGTTCTTTTATAACTTCG
259 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACT-AGTTCTTTTATAACTTCG
* * ** *
120766 CTTCCTTAAGGTATTCAGGACGATCCATTCCTTCGAGCAATTTTCCAAACAATCCATGCTC-GGA
323 CTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGG-
** * * * *
120830 AAAATCGTATTACTTGGTCTAAATAGTTGGTCATTTTGTAAACATA-TTTTGTTCTTTAAATTAA
387 -AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-AGTTTTG-TCTTTGAATTAA
* * * * * *
120894 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTACCAAACTTGTCAAAAT
449 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * ** * * * *
120959 TTTATGTGAGAATTATTTT-TCTCTTGGTTTTTGGACGAACTTCAGAACT-TGTCAAACTTTTAC
514 TTTA---CA-AGTTCTTTTATAACTTCG--ATT---C---CTT-A-AAGTAT-TC-AA----GAC
* * **** * * * * * * **
121022 GAGTTCTTTTATAAATTTGCTTCCTTAAAGTTTTCAAAACGA-TCCATTCCTTCAAGTAATTTTT
559 GA--TC-------CA-TTCCTTCGAGCAATTTTTC-GAAC-ATTCCA-TGC-TC-GGGAA-ATCA
* * * * ** * **
121086 CGAACATTCCATGCTCGAGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGT
608 C-ATCATT---TGGTC--TAAAT---A--GTTT-GTC-ATTTTGTAA------------ACAAGT
* * *
121151 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTTTTTGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
121216 TCTGAACATGTCAAACTTTTACGAGTTCTTTTATAAATTTGCTTCCTTAAAGTTTTCAAGAAGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* ** * * * * * *
121281 CCATTCCTTCGAGCAATTTTTTGAACAACCCTTGCTAGAGAAATCGCGTCATTTCGTTTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAG
*
121346 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTGAAAACTTATTTACGTGAGAATTGTTTCT
196 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * ** * * * *
121411 CCCTTGGTTCTTGGACGAACTTGCGAACTTGAAAAAAC-TTTCCTAGTACTTTTATAACTCCGAT
261 CTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTTTTACTAGTTCTTTTATAACTTCGCT
* * * * * * *
121475 TTCTTAAAGTATCCCAGACGATCCATTCCTTCAATCAATTTT-TCCAACATTCCATTCT-TGGGA
325 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCT-GGA
* * * * * *
121538 AATCAAATCATTTCGTCTAAATAATTTGTAATTTTGTAAACAAGTTTTAATCATTGAATTAAAAA
388 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAAAAA
* * * * *
121603 CTTATTTACGTGAGAATTCTTTCTCTCTTCGTTCTTGAACGAACTTCCGAACTTGTCAAACTTAT
452 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * * *
121668 ACGAGGTT-TTTTAAAACTTTGATTTCATAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
517 AC-AAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *** * *
121732 TTCAAACATTCCATGCTCAAGGAAATTGTATTATTTGGTCTAAATAATTTGTCATTTTGTAAACA
581 TTCGAACATTCCATGCTC-GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
121797 CA-T
645 -AGT
* * * * * * *
121800 TTTGTTTTTTAAATTAAAAACTTATTTATGTGAGAATTATTTTTCTCTTGGTTTTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* *
121865 TCAGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGCTTCCTTAAAGT-TTCCAAGACGA
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATT-CAAGACGA
* * * * * * * ** * *
121929 TCCATTCCTTCAAGCATTTTTTCGAACAATCAATACTCGAGAAATTACATCATTTCGTTTAAATA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATA
*
121994 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * *
122059 TATCTTGGTTTTTTGACGAACTTCCGAACATGTCAAACTTTTACGAGTTCTTTTATAAATTCGCT
260 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGCT
* * * * *
122124 TACTTAAAGTTTTCAAGATGATTCATTCCTTCGAGCAATTTT-TCAA-ATAATCCATGCTC-GAG
325 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACAT--TCCATGCTCTG-G
** * *
122186 AAATCACATCATTTCATCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTGAAA
387 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAAAA
* * * **
122251 ACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAACTTGCGAACTTGAAAAAAC-T
451 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTT
* * * * * * *
122315 TTCCTAGTACTTTTATAACTCCGATTCCTTAAAGTATCCCAGACGATCCATTCCTTCAAGCAATT
515 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * * *
122380 TTTTGAACATTCCTTGCTTGGGAAAATCGA-ATCATTTCGTCTAAATAATTTATAATTTTGTAAA
580 TTTCGAACATTCCATGCTCGGG-AAATC-ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
122444 CAAGT
643 CAAGT
** * *
122449 TTTAATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTCGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
122514 T-TCAAACTTGTCAAACTTTTACAAGTTTTTTTAAAACTTCGATTCCATAAAGTATTCAAGACGA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGA
* ** * * *
122578 TCCATTCCTTCGAGCAAATTTTCGAACATTCCATGCTCAAGGAAATTGTATTATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAAT
* * ** * ** *
122643 AATTTGTCATTTTGTAAACACA-TTTTGTTCTTCAAATTAAAGACTTATTTTTGTGAGAATTATT
194 AGTTTGTCATTTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
* * * * * *
122707 TTTCTCTTGGTTTTTGGATGAAC-TCCAGAACTTGTTAAACTTTTACGAGTTCTTTTATAAATTC
258 TCTCTCTTGGTTCTTGGACGAACTTCC-GAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTC
* *
122771 GCTTCCTTAAAGT-TTCCAAGACGATCCATTCCTTCGAGCAATTTT-TCGAACAATCCATGCTCA
322 GCTTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCT
* * *
122834 AGAAATCGCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-A
385 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAA
* * * * * * *
122898 AAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTTTTTGATGAACTTCTGAACATGTCAAACT
449 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * *
122963 TTTACGAGTTCTTTTATAAATTCGCTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCAAT
514 TTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * **
123028 TTTTCGAACAATCCATGCTCGAGAAATCGCATCATTTCATCTAAATAGTTTGTCATTTTGTAAAC
579 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
123093 AAGT
644 AAGT
* * * * *
123097 TTTGGACTTTGAATTGAAAACTTATTTACGTAAGACTTGTTTCTCTCTTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
** * * * * *
123162 T-TCGAACTTGAAAAAACTTTTGCTAGTTCTTTTATAACTCCGTTTCCTTAAATTATTCAAGACG
66 TCT-GAACTTG-TCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACG
** * * * * * *
123226 ATCCATTATTTCAAGCAATTTTCCAAACATTCCATGCTCT-GTAATTCGCATCTTTTGGTCTAAA
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAA
** * * * * * * *
123290 TA-AATGTAATTTTGTAAACAAGTTTTTAGACTTTGAATTCAAAACTTATCTACATGAGAATTCT
193 TAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * * * *
123354 TTCTCTCTTGGTTCTTGGTCGAACTTCAGAACTTGTCAAACTTTAACAAGTTCTTTTATATCTTC
257 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTC
** * * * * *
123419 AATTTCTTAAAATATTCATGACGACCCATTCCTTCGAGAAATTTTCT-AAGCATTCCATGCT-TG
322 GCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAA-CATTCCATGCTCT-
* * * *
123482 GGAAATCACAACAATTGGTCTAGATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTA
385 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAA
* * * * *
123547 TAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCAAAGTTGTCAAACT
449 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * *
123612 TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAAT
514 TTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * ** * * * * *
123677 TCTCCAAATATTCCATGCTCGAAAAATCGCATCAGTTGATCTGAATAGTTTGTCATCTTGTAAAC
579 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
123742 AAGT
644 AAGT
* * * *
123746 TTTGGTCTTTAAATT--AAA---A---AC-------TTG-TT-TCTCTTAGTTTTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * *
123794 T-TCGAACTTGTCAATCTTTTATGACTTCTTTTATAACTTCGCTTCCTTTAAAGTATTCAGGACG
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCC-TTAAAGTATTCAAGACG
* * * * * *
123858 ATCCATTCCTTCAAACAATTTTCCGAACATTCCATGCTTTGGAAATCACATCAATTGGTCTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAT
* *
123923 AGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAACATATTTACGTGAGAATTGTTT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* *
123988 CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTTG
259 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACT-AGTTCTTTTATAACTTCG
* * * * * * *
124052 ATTCCTTAAAGTATTCAAGATGATCGATTCTTTCGACCAATTTTTTGAACATTTCATGCTC-GAG
323 CTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTG-G
* * * * *
124116 AAATCGCATCAATTGGTCTAAATAGTTTGTCATTTTGTAAGA-AACTTTTGGTCATTAAATTAAA
387 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACAAGTTTT-GTCTTTGAATTAAA
* ** *
124180 AACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTTAACGAACTTCTGAACTTGTCAAACTT
450 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
* * * * *
124245 CTACAAG-TCCTTTATAACTTCGATTCCTTAAAGTATTCAAGACGTTCCGTTCCTTTGAGCAATT
515 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * *
124309 TTCCGAACATTCCATGCTCGGGAAATCACATCAATTGGTCTAAATAGTTTGTTATTTTGTAAACA
580 TTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
124374 AGT
645 AGT
* *
124377 TTTTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * * *
124442 TCCGAACTTGTCAAACTTTTTCAAGATCTTTTATAAATTTGCTTCCTCAAAGTTTTCAAGACGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* * * *
124507 CCATTCCTTCGAGCAATTTGTT-GAACAATCCATGCTCGAGAAATCGTATCATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTT-TTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATA
* *
124571 GTTTGTCATTTTGTAAACTAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * ** * *
124636 TCTCTTGGTTCTTGGAAGAACTTTCGAACTTGTCAGACTTTTAAAAATTCTTTTATAACTTCGGT
260 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGCT
* * * ***
124701 TCGTTAAAGTATTCAAGACGATCTATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCAACAAA
325 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGAAA
* * * * *
124766 TTACATCATTTGGTCTAAATAGTTTTTAATTTTGTAAACATGATTTGATCTTTGAATTAAAAACT
390 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATTAAAAACT
* * * * **
124831 TATTTACATGAGAATTATTTCACTCTTTGTTCTTGGATGAACTTTTGAACTTGTCAAACTTTTAC
454 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
* * * **
124896 GAGTTCTTTTATAACTTCGATTCCTGAAGAGCATTCAAGACGATAAATTCCTTCGAGCAA-TTTT
519 AAGTTCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * * *
124960 CTAAACATTCCATGCTTGGGAAATAAAATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAAG
583 C-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
125025 T
647 T
* *
125026 TTTGGTCTTTGAATTGGAAAA-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
1 TTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* ** * * * *
125090 TTCCGAACTTGAAAAAAACTTTTACTAGTTCTTTTATAACTCCGGTTCCATAAAGTATTCAAG-C
65 TTCTGAACTTG--TCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGAC
* * * *
125154 TGATACATTACTTCGAGCAATTTTTCGAACATTCCATGCTTTGAAAATCGCATCATTTGGTCTAA
128 -GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAA
* * ** * * * *
125219 ATAATATGAAATTTTGTAAACAAGTTTTTGTCTTTGAATAAAAAACTTATTTACGTGGGAATTCT
192 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* * *
125284 TTCTCTCTTGGTTTTTGGACGAACTTCCGAAGC-TGTCAAACTTTTACGAGTTCTTTAATAACTT
257 TTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACTTTTACTAGTTCTTTTATAACTT
* * * * * ** * *
125348 CGGTTCCTTAATGTATTCAAGGCTATCTATTCCTTCGAGCAATCCTC-CAGACATTCCATGCTCA
321 CGCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTCT
* *
125412 GAAAATCACATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAA
385 GGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-GTCTTTGAATTAA
* ** * *
125477 AAATTTATTTATTTGAGGATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACT
449 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * * * * *
125540 TTTATAAGTTCTTTCATAACTTCGCTTCCTTAAAGTATTCAGGACGGTCCGTTCCTTTGAGCGA-
514 TTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* * * * * * *
125604 TTTACTGAACATTCCATGCTCGGGAAATCATATTATCTAGTCTAAATAGTTGGTCATTTTGGAAA
579 TTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
**
125669 CATCT
643 CAAGT
* * * * *
125674 TTTGTTCTTTAAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
125739 T-TCGAACTTGTCAAA-TTTTATGAGTT-TTTTATAACTTTGCTTCCTTAAAGTTTTCAAGACGA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGA
* * * * * * * *
125801 TCCATTCCTTCGAGAAATTTTTCGAACATTCTATGCTCGAGAAATGGCATCATTTGGACTACATT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATA
*
125866 GTTTGTCATTTTGTAAACAATTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
195 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * ** * *
125931 TCTCTTGGTTTTTTGGACAAACTTTCGAACTTGTCAAATTTTTAAAAGTTTTTTTATAACTTCGG
260 TCTCTTGG-TTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGC
* * * * * *
125996 TTCCTTGAAGTATTCAAGACGACCCATTCCTTTGAGAAATTTT-TCGAACATTCCGTGCTCGGGA
324 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCTGGA
* * * * * *
126060 AATCGCATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACATGATTTGATCTTTGAATTAAGAA
388 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATTAAAAA
**
126125 CTTATTTACATGAGAATTGTTTCTCTCTTTTTTTCTTGGACGAACTTCTC-AACTTGTCAAACTT
452 CTTATTTACATGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTC-CGAACTTGTCAAACTT
** * *
126189 TTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTTCTTCGAGCAA-T
515 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* *
126253 TTTCTGAACATTCCATGCTCGGGAAATCAGATCAATTGGTCTAAATAGTTTGTCATTTTGTAAAC
580 TTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
126318 AAGT
644 AAGT
* *
126322 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
126387 T-TCGAAGTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCAA
66 TCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGA
* * * ** * * * *
126451 TCCGTTCCTTCGAGCAA-TTCTCTAAACATTCCATGCTCAGAAAATCGCATCAGTTGGTTTGAAT
130 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAAT
* * * *
126515 AGTTTCTCATTTTGTAAACAAATTTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTG-TT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * ** * *
126579 -TCTCTTGGTTCTTTGATGAACTTCTAAACTTGTCAAACTTTTA-TGACTTATTTTATAACTTCG
259 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACT-AGTTCTTTTATAACTTCG
* * *
126642 CTTCCTTTAAAGTATT-AAGGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCGATGCTCGG
323 CTTCC-TTAAAGTATTCAA-GACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTG
** * * * * ** * *
126706 GAAATCGTATTATTTGGTCTAAATAATTGGTCATTTTGGAAACATCTTTTGTTCTATAAATTAAA
386 GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATTAAA
* * * * * * *
126771 AACTTATTTA-AGTAAGAATTATTTCTCTCTTGCTTCTTGGATGAACTTTCGAGCTTGTCAAA-A
450 AACTTATTTACA-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * * *
126834 TTTATGAA-TTCTTTTATAACTTCGCTTCCTTAAAGTTTTCAAGACAAACCATTCCTTCGAGAAA
514 TTTA-CAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** * * ** *
126898 TTTTTCGAACATTCCATTATTGAGAAATGGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAA
578 TTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
126963 CAATT
643 CAAGT
* * *
126968 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTAGATGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * ** * * * * * *
127033 TC-CAAATATGTCAAACTTTTAAAAGTTC-TTTACAACTCCGGTTCCTTGAAGTAATCAAGATGA
66 TCTGAACT-TGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGA
* * * * *
127096 ACCATTCCTTGGAGAAATTTTTCGAACATTCCATGCTCT-GGAAATCACATCATTTGGTTTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAAT
* * * * * * **
127160 AGTTTGTCATTTCGTAAATATGATTTGATCTTTGAATTAAAAACTTATTTACATGAGAATCATTT
194 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
127225 CTCTCTTTGTTATTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGA
259 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGC
* * * *
127290 TTCCTTAAAGTATTCAAGATGATACATTCGTTCGAGCAATTTTCTAAACATTCCATGCT-TCGGA
324 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCT-GGA
* * * * *
127354 AATCGCATAATTTGGTCTAAATAGTTTGCCATTTTCTAAACAAGTTTTGATCGTTGAATTAAAAA
388 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-TCTTTGAATTAAAAA
** * * **
127419 CTTATTTTATGTGAGAATTGTTTCTCTCTTGTTTCTTGGAC-AACTTACGAACTTGAAAAAACTT
452 CTTA-TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTT
* * * * * * * * *
127483 TTCCTAGTTCATTTATAACTCCGGTTCCTTAAAGTATTCCAA-ACAATTCATTCCTTCCAGGAAT
515 TTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAGCAAT
* * * * * * *
127547 TTTTCGAACATTCCATACTCGAGAAATCAAATCATTTCGTCTAAATAATTTGTAATTTTGTAAAA
579 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
127612 AAGT
644 AAGT
** * * * * **
127616 TTTAATCTTTGAATTAAAAACTTTTTTACGTGAAAATTCTTTGTCTCTCCGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * * *
127681 TCCGAGCTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGATTCCATAAAGTATTCAAGATGAT
66 TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
* * ** *
127746 CCTTTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGGAAATCATATTATTTGGTCTAAATA
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAATA
* * ** * *
127811 ATTTGTCTTTTTTGTAAACACCTTTTGTTCTTTAAATTAAAAAC----TTA----A-AATTGTTT
195 GTTTGTC-ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * *
127867 CTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACTTTTCCAAGATCTTTTAT
259 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTAT
127924 GAATTTGTCA
Statistics
Matches: 7292, Mismatches: 1260, Indels: 443
0.81 0.14 0.05
Matches are distributed among these distances:
631 150 0.02
632 354 0.05
633 25 0.00
634 3 0.00
636 1 0.00
639 2 0.00
641 5 0.00
642 134 0.02
643 94 0.01
644 193 0.03
645 398 0.05
646 330 0.05
647 932 0.13
648 1495 0.21
649 1788 0.25
650 440 0.06
651 357 0.05
652 3 0.00
655 3 0.00
656 1 0.00
657 5 0.00
658 1 0.00
661 4 0.00
662 7 0.00
663 4 0.00
664 2 0.00
665 1 0.00
668 4 0.00
670 4 0.00
671 1 0.00
672 6 0.00
673 18 0.00
674 5 0.00
675 8 0.00
676 6 0.00
677 10 0.00
678 17 0.00
679 1 0.00
681 4 0.00
684 4 0.00
686 2 0.00
687 1 0.00
688 4 0.00
689 3 0.00
690 3 0.00
691 4 0.00
692 2 0.00
693 5 0.00
694 2 0.00
695 2 0.00
701 2 0.00
702 5 0.00
703 134 0.02
704 2 0.00
705 91 0.01
706 111 0.02
707 92 0.01
708 7 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (647 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTCGCTT
CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCTGGAAAT
CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTCTTTGAATTAAAAACTTA
TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAA
GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
ACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
Found at i:120999 original size:58 final size:58
Alignment explanation
Indices: 120909--121020 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
120899 TATTTACGTA
* *
120909 AGAATTGTTTCTCTCTTGGTTCTTGGATGAACTACCA-AACTTGTCAAAATTTTATGTG
1 AGAATTATTTCTCTCTTGGTTCTTGGACGAACT-CCAGAACTTGTCAAAATTTTATGTG
* * * *
120967 AGAATTATTTTTCTCTTGGTTTTTGGACGAACTTCAGAACTTGTCAAACTTTTA
1 AGAATTATTTCTCTCTTGGTTCTTGGACGAACTCCAGAACTTGTCAAAATTTTA
121021 CGAGTTCTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.04
58 45 0.96
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (58 bp):
AGAATTATTTCTCTCTTGGTTCTTGGACGAACTCCAGAACTTGTCAAAATTTTATGTG
Found at i:124417 original size:431 final size:433
Alignment explanation
Indices: 123772--127909 Score: 4579
Period size: 431 Copynumber: 9.6 Consensus size: 433
123762 AAAACTTGTT
* * * * ** * *
123772 TCTCTTAGTTTTTGGATGAACTT-TCGAACTTGTCAATCTTTTATGACTTCTTTTATAACTTCGC
1 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGG
* * * **
123836 TTCCTTTAAAGTATTCAGGACGATCCATTCCTTCAAACAATTTTCCGAACATTCCATGCTTTGGA
65 TTCC-TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGA
*
123901 AATCACATCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTG-TCTTTGAATTAAAA
129 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAA
* *
123965 ACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTT
194 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * * * *
124030 TATGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGATCGATTCTTTCGACCAATTT
259 TATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * *
124095 TTTGAACATTTCATGCTCGAGAAATCGCATCAATTGGTCTAAATAGTTTGTCATTTTGTAAGA-A
324 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA-ACA
* * * * *
124159 ACTTTTGGTCATTAAATTAAAAACTTATTTACATGAGAATTCTTTC
388 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
** * * *
124205 TCTCTTGGTTCTTTAACGAACTTCTGAACTTGTCAAACTTCTACAAG-TCCTTTATAACTTCGAT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
* * *
124269 TCCTTAAAGTATTCAAGACGTTCCGTTCCTTTGAGCAATTTTCCGAACATTCCATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAA
* *
124334 TCACATCAATTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTTTTTG-TCTTTGAATTAAAAAC
131 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAAAC
*
124398 TTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT-
196 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
* * * * * * *
124462 TCAAGATCTTTTATAAATTTGCTTCCTCAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTG
261 T-GAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT-
* * *
124527 TT-GAACAATCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACTA
324 TTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
124591 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGATTC
389 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * *
124636 TCTCTTGGTTCTTGGAAGAACTT-TCGAACTTGTCAGACTTTTAAAAATTCTTTTATAACTTCGG
1 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGG
* * * * ***
124700 TTCGTTAAAGTATTCAAGACGATCTATTCCTTCGAGTAATTTTCTGAACATTCCATGCTCAACAA
65 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAA
* * * * *
124765 ATTACATCATTTGGTCTAAATAGTTTTTAATTTTGTAAACATG-ATTTGATCTTTGAATTAAAAA
130 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAAA
* * * * * **
124829 CTTATTTACATGAGAATTATTTCACTCTTTGTTCTTGGATGAACTTTTGAACTTGTCAAACTTTT
195 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * **
124894 ACGAGTTCTTTTATAACTTCGATTCCTGAAGAGCATTCAAGACGATAAATTCCTTCGAGCAA-TT
260 ATGAGTTCTTTTATAACTTCGATTCCTTAA-AGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * *** *
124958 TTCTAAACATTCCATGCTTGGGAAATAAAATCATTTGGTATAAATAGTTTGTCATTTTGTAAACA
324 TTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
125023 AGTTTTGGTCTTTGAATTGGAAAA-TTATTTACGTGAGAATTGTTTC
388 AGTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTC
* * ** * *
125069 TCTCTTGGTTCTTGGACAAACTTCCGAACTTGAAAAAAACTTTTACTAGTTCTTTTATAACTCCG
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTG--TCAAACTTTTACAAGTTCTTTTATAACTTCG
* * * * ** *
125134 GTTCCATAAAGTATTCAAG-CTGATACATTACTTCGAGCAATTTTTCGAACATTCCATGCTTTGA
64 GTTCCTTAAAGTATTCAAGAC-GATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGG
* * * ** *
125198 AAATCGCATCATTTGGTCTAAATAATATGAAATTTTGTAAACAAGTTTTTG-TCTTTGAATAAAA
128 AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAA
* * *
125262 AACTTATTTACGTGGGAATTCTTTCTCTCTTGGTTTTTGGACGAACTTCCGAAGC-TGTCAAACT
193 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-CTTGTCAAACT
* * * * * * *
125326 TTTACGAGTTCTTTAATAACTTCGGTTCCTTAATGTATTCAAGGCTATCTATTCCTTCGAGCAA-
257 TTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
** * * *
125390 TCCTCCAGACATTCCATGCTC-AGAAAATCACATCATTTGGTCTGAATAGTTTGTCATTTTGTAA
322 TTTTCGA-ACATTCCATGCTCGAG-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* ** *
125454 ACAAGTTTTGGTCTTTGAATTAAAAATTTATTTATTTGAGGATTG-TT-
385 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
125501 TCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTATAAGTTCTTTCATAACTTCGCT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
* * * * * * *
125566 TCCTTAAAGTATTCAGGACGGTCCGTTCCTTTGAGCGATTTACTGAACATTCCATGCTCGGGAAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAA
* * * * * * * *
125631 TCATATTATCTAGTCTAAATAGTTGGTCATTTTGGAAAC-A-TCTTTTGTTCTTTAAATTAAAAA
131 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTTGATCTTTGAATTAAAAA
* * * *
125694 CTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTTCGAACTTGTCAAA-TTTT
195 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTT
* * * *
125758 ATGAGTT-TTTTATAACTTTGCTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGAAATTTT
260 ATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
125822 TCGAACATTCTATGCTCGAGAAATGGCATCATTTGGACTACATTGTTTGTCATTTTGTAAACAAT
325 TCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
125887 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
390 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
125931 TCTCTTGGTTTTTTGGACAAACTT-TCGAACTTGTCAAATTTTTAAAAGTTTTTTTATAACTTCG
1 TCTCTTGG-TTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCG
* * * * * *
125995 GTTCCTTGAAGTATTCAAGACGACCCATTCCTTTGAGAAATTTTTCGAACATTCCGTGCTCGGGA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGA
* * * * * *
126060 AATCGCATCATTTGGTTTAAATAGTTTGTCAATTTGTAAACATG-ATTTGATCTTTGAATTAAGA
129 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAA
* **
126124 ACTTATTTACATGAGAATTGTTTCTCTCTTTTTTTCTTGGACGAACTTCTC-AACTTGTCAAACT
194 ACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTC-CGAACTTGTCAAACT
* *
126188 TTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATACATTTCTTCGAGCAA-
257 TTTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAAT
* *
126252 TTTTCTGAACATTCCATGCTCGGGAAATCAG-ATCAATTGGTCTAAATAGTTTGTCATTTTGTAA
322 TTTTC-GAACATTCCATGCTCGAGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
126316 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
385 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * *
126365 TCTATTGGTTCTTGGATGAACTT-TCGAAGTTGTCAAACTTTTA-AGAGTTCTTTTATAACTTCG
1 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCG
* * * * ** * *
126428 GTTCCTTAAAGTATTCAAGGCAATCCGTTCCTTCGAGCAATTCTCTAAACATTCCATGCTCAGAA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGA
* * * * * * **
126493 AATCGCATCAGTTGGTTTGAATAGTTTCTCATTTTGTAAACAA-ATTTTGGCCTTTGAATTAAAA
129 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAA
* * * **
126557 ACTTATTTACATGAGAATTG-TT-TCTCTTGGTTCTTTGATGAACTTCTAAACTTGTCAAACTTT
194 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
* * *
126620 TATGACTTATTTTATAACTTCGCTTCCTTTAAAGTATT-AAGGACGATCCATTCCTTCGAGCAAT
259 TATGAGTTCTTTTATAACTTCGATTCC-TTAAAGTATTCAA-GACGATCCATTCCTTCGAGCAAT
* * * * * * * *
126684 TTTCCGAACATTCGATGCTCGGGAAATCGTATTATTTGGTCTAAATAATTGGTCATTTTGGAAAC
322 TTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
** * * * * * *
126749 ATCTTTTGTTCTATAAATTAAAAACTTATTTAAGTAAGAATTATTTC
387 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
126796 TCTCTTGCTTCTTGGATGAACTT-TCGAGCTTGTCAAA-ATTTATGAA-TTCTTTTATAACTTCG
1 TCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTA-CAAGTTCTTTTATAACTTCG
* * * * * * ** * *
126858 CTTCCTTAAAGTTTTCAAGACAAACCATTCCTTCGAGAAATTTTTCGAACATTCCATTATTGAGA
64 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGA
** * *
126923 AATGGCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAA-TTTTTGGTCTTTGAATTAAAA
129 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAA
* * * *
126987 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTAGATGAACTTCC-AAATATGTCAAACTT
194 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT-TGTCAAACTT
** * * * * * * * * *
127051 TTAAAAGTTC-TTTACAACTCCGGTTCCTTGAAGTAATCAAGATGAACCATTCCTTGGAGAAATT
258 TTATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * *
127115 TTTCGAACATTCCATGCTCTG-GAAATCACATCATTTGGTTTAAATAGTTTGTCATTTCGTAAAT
323 TTTCGAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * * **
127179 ATGATTTGATCTTTGAATTAAAAACTTATTTACATGAGAATCATTTC
387 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
127226 TCTCTTTGTTATTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGAT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
* * * **
127291 TCCTTAAAGTATTCAAGATGATACATTCGTTCGAGCAATTTTCTAAACATTCCATGCTTC-GGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGC-TCGGGAA
* * * * *
127355 ATCGCATAATTTGGTCTAAATAGTTTGCCATTTTCTAAACAAG-TTTTGATCGTTGAATTAAAAA
130 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAAA
* * * **
127419 CTTATTTTATGTGAGAATTGTTTCTCTCTTGTTTCTTGGAC-AACTTACGAACTTGAAAAAACTT
195 CTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG-TCAAACTT
* * * * * * * *
127483 TTCCT-AGTTCATTTATAACTCCGGTTCCTTAAAGTATTCCAA-ACAATTCATTCCTTCCAGGAA
258 TT-ATGAGTTCTTTTATAACTTCGATTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAGCAA
* ** * * *
127546 TTTTTCGAACATTCCATACTCGAGAAATCAAATCATTTCGTCTAAATAATTTGTAATTTTGTAAA
321 TTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* ** * * * *
127611 AAAGTTTTAATCTTTGAATTAAAAACTTTTTTACGTGAAAATTCTTTG
386 CAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
** * * * *
127659 TCTCTCCGTTCTTGGACGAACTTCCGAGCTTGTCAAACTTTTACAAGTTCTTTTAAAACTTCGAT
1 TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
* * * *
127724 TCCATAAAGTATTCAAGATGATCCTTTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGGAA
66 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTC-GGGAA
* * * * ** * *
127789 ATCATATTATTTGGTCTAAATAATTTGTCTTTTTTGTAAAC-ACCTTTTGTTCTTTAAATTAAAA
130 ATCACATCATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAA
* *
127853 AC----TTA----A-AATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACTTT
194 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTT
127909 T
259 T
127910 CCAAGATCTT
Statistics
Matches: 3128, Mismatches: 507, Indels: 148
0.83 0.13 0.04
Matches are distributed among these distances:
425 33 0.01
426 12 0.00
428 131 0.04
429 25 0.01
430 531 0.17
431 860 0.27
432 377 0.12
433 617 0.20
434 301 0.10
435 236 0.08
436 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (433 bp):
TCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAA
TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGATCTTTGAATTAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTA
TGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
CGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
Found at i:127989 original size:140 final size:148
Alignment explanation
Indices: 127797--128058 Score: 351
Period size: 149 Copynumber: 1.8 Consensus size: 148
127787 AAATCATATT
* * *
127797 ATTTGGTCTAAATAATTTGTCTTTTTTGTAAACACCTTTTGTTCTTTAAATT-A-AA-A-ACTT-
1 ATTTGGTCTAAATAATTTGTCTATTTTGTAAACACCATTTGGTCTTTAAATTAATAACATACTTA
* *
127857 A-A-AATTGTTTCTCTCTTGGTTCTTGGACGAAGTTCTGAACTTGTCAAACTTTTCCAAGATCTT
66 AGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTCCAAGATCTT
127920 TTATGAATTTGTCACATC
131 TTATGAATTTGTCACATC
* ** * *
127938 ATTTGGTCTAAATAGTTTGTC-ATTTTGTAAACATGATTTGGTCTTTGAATTAATAACATATTTA
1 ATTTGGTCTAAATAATTTGTCTATTTTGTAAACACCATTTGGTCTTTAAATTAATAACATACTTA
*
128002 CATGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTT
66 -A-GAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTT
128059 ACGAGTTTTA
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
140 24 0.24
141 21 0.21
142 2 0.02
143 1 0.01
144 3 0.03
146 1 0.01
148 1 0.01
149 48 0.48
ACGTcount: A:0.27, C:0.14, G:0.13, T:0.45
Consensus pattern (148 bp):
ATTTGGTCTAAATAATTTGTCTATTTTGTAAACACCATTTGGTCTTTAAATTAATAACATACTTA
AGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTCCAAGATCTT
TTATGAATTTGTCACATC
Found at i:128753 original size:216 final size:216
Alignment explanation
Indices: 127934--130210 Score: 2408
Period size: 216 Copynumber: 10.6 Consensus size: 216
127924 GAATTTGTCA
*** * *
127934 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGATTTGGTCTTTGAATTAATAACATAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
127999 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC-TTCTGAACTTGTCAAACTTTTACGA
66 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGA
** * * * * *
128063 G---TTTTATAACTTTTATTCCATAGAGTATTCAAGATGATACATTCCTTTGAGCAATTTTTCA-
130 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-AG
* * *
128124 AACATTCCATGCTTGGGAAATCA
194 AACATTCCATGCTCGAGAAATCG
* *
128147 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTGTGGTCTTTGAATTGAAAAA-TTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTA
* * *
128211 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-TAAAAAAAACTTTT
65 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT----CAAACTTTT
* * * * * ** * **
128275 ACTAGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGCCGATATATTACTTTTAGCAATTTT
126 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*
128340 TCA-AACATTCCATGCTCTAGAAATCG
191 T-AGAACATTCCATGCTCGAGAAATCG
* * * * * ** *
128366 CATCATTTGGTCTAAATAATATGTAATTTTTCTAAACAAGTTTAAGTGTTTGAATTAAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * *
128431 TTTACGTGAGAATTCTTTCTCTCTTGGTTCTTTGACAAACTTCCAAAGTTGTTAAACTTTTATGA
65 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * *
128496 GTTCTTTTATAGCTTC-AGTTCCTTAAAATATTCATGACGATCCATTCCTTCGA-CAAATTTTTA
130 GTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTTA
*
128559 GAACATTCCTTGCTCGAGAAATCG
193 GAACATTCCATGCTCGAGAAATCG
** * * *
128583 CATCAAGTGGTCTAAATAGTTTGTCATTTTGTTAGA-AACTTTTGGTCTTTAAATTTAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * *
128647 TTTACGTGAGAGTTCTTTCTCTTTTGGTTCTTGGACGAACTTTCGAACTTGTCAAATTTTTACGA
65 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * **
128712 GTTCTTTTATAACTTCGATTCCTCAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTCTCCAG
130 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTAG
* *
128777 -ACATTCCATGATCGAAAAATCG
194 AACATTCCATGCTCGAGAAATCG
* * *
128799 CATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAAACTTA
* * * * *
128864 TTTACGTGAGAATTATTTCTCTATTGGTTCTTGGACGAACTTTCGAAGTAGTCAAACTTTTTACA
65 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC-TTTTACG
* * * * * * * *
128929 AGTTATTTAATAACTTCGGTTCCTTAAAGTATTCAAGGCAATCTATTCCTTCAAGCAATTCTCTA
129 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTA
* * *
128994 -AACATACCATGCTCGAAAAATCA
193 GAACATTCCATGCTCGAGAAATCG
* *
129017 CATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAAGC-TTTGGTCTTTGAATTTAAAACTTA
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTTA
** *
129081 TTTAAATGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTAAC-
65 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT-ACG
* * * ***
129143 AGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAGGACGATCCATTCCTTCGAGCAATATACCG
129 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTAG
* *
129208 AACATTCGATGCTCGGGAAATCG
194 AACATTCCATGCTCGAGAAATCG
* * * * * * * *
129231 TATTATTTGGTGTAAATAGTTGGTCATTTTGGAAACATCTTTTGTTCTTTAAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * *
129296 TTAAGTAAGAATTGTTTGTCTCTTGCTTTTTGGACAAACTTACGAACTTGTCAAA-TTTTATGAG
66 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
** *
129360 TTCTTTTATAACTTCTCTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTTGT-GA
131 TTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TAGA
*
129424 ACATTCCATGCTCGAGAAATTG
195 ACATTCCATGCTCGAGAAATCG
* * * *
129446 TATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAATTTTTGGTCTTTGAATTAAAAATTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * **
129511 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA-TTTCCAAACTTGTCAAACTTTTAAAA
66 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAAACTTTTACGA
* * ** * * *
129575 GTTCTTTTATAACTTCGATTCGTTGAAGTATTCAAGACGATCCATTCCTTTTAGAAAATTTTCGA
130 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTAGA
* *
129640 ACATTCCATGCTTGGGAAATCG
195 ACATTCCATGCTCGAGAAATCG
* *** * *
129662 CATCATTT-GTTTAAATAGTTTGTCATTTTGTAAACATGATTTGATCTTTGAATTAAGAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
129726 TTACATGAGAATTGTTTCTCT-TT-TTTCTTGGACGAAC-TTCTAAACTTCTCAAACTTTTATGA
66 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGA
* ** * *
129788 GTTCTTTTATAACTTCTACTT-CTTGTAGTATTCAAGGCGATACATTCCTTCGAGCAATTTTCT-
130 GTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TA
* * *
129851 GAGCATTCCATGCTCGGGAAATCT
193 GAACATTCCATGCTCGAGAAATCG
* * *
129875 CATCAATTGGTCTAAATAGTTTGTCATTTTGTCAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
129940 TTACGTGAGAATTGTTTCT-TGATTGGTTCTTGGACGAAC-TTCCAATGTTGTTAAACTTTTACA
66 TTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTTCGAA-CTTGTCAAACTTTTACG
* * * * * * * * **
130003 AGTTCTTTTATAACTTCTG-TTCCTTAACGAATTCAAGGCAATTCGTTCCTTCAAGCAATTCTCC
129 AGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTA
*
130067 GAACATTCCATGCTC-AGAAAATCA
193 GAACATTCCATGCTCGAG-AAATCG
* * *
130091 CATCAGTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
** * * *
130156 TTACGTGAGAA---AAT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTT
66 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTT
130211 CGAACATTCC
Statistics
Matches: 1742, Mismatches: 273, Indels: 99
0.82 0.13 0.05
Matches are distributed among these distances:
212 30 0.02
213 213 0.12
214 220 0.13
215 295 0.17
216 496 0.28
217 186 0.11
218 133 0.08
219 97 0.06
220 71 0.04
221 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (216 bp):
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTAGAA
CATTCCATGCTCGAGAAATCG
Found at i:129786 original size:429 final size:430
Alignment explanation
Indices: 127934--130210 Score: 2488
Period size: 429 Copynumber: 5.3 Consensus size: 430
127924 GAATTTGTCA
* * * * *
127934 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGATTTGGTCTTTGAATTAATAACATAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAT
* * *
127999 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAACTTTTACGAG
66 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTATGAG
* * * * * * * *
128064 ---TTTTATAACTTTTATTCCATAGAGTATTCAAGATGATACATTCCTTTGAGCAATTTTTCAAA
131 TTCTTTTATAACTTCTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAA
* * *
128126 CATTCCATGCTTGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTGTG
195 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* *
128191 GTCTTTGAATTGAAAAA-TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
260 GTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCC
* * * * * *
128255 GAACTT-TAAAAAAAACTTTTACTAGTTCTTTTATAACTTTGGTTCCTTAAAGAATTCAAGCCGA
324 GAACTTGT----CAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
** * ** * **
128319 TATATTACTTTTAGCAATTTTTCAAACATTCCATGCTCTAGAAATCG
385 TCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCG
* * * * * *
128366 CATCATTTGGTCTAAATAATATGTAATTTTTCTAAACAAG-TTTAAGTGTTTGAATTAAAAACTT
1 CATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAAGTTTTGA-TCTTTGAATTAAAAACTT
* * * * * * *
128430 ATTTACGTGAGAATTCTTTCTCTCTTGGTTCTTTGACAAACTTCCAAAGTTGTTAAACTTTTATG
64 ATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTATG
* ** * *
128495 AGTTCTTTTATAGCTTCAGTTCCTTAAAATATTCATGACGATCCATTCCTTCGA-CAAATTTTTA
129 AGTTCTTTTATAACTTCTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGC-AATTTTT-
* * ** * *
128559 GAACATTCCTTGCTCGAGAAATCGCATCAAGTGGTCTAAATAGTTTGTCATTTTGTTAGA-AACT
192 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAGT
* * * * *
128623 TTTGGTCTTTAAATTTAAAACTTATTTACGTGAGAGTTCTTTCTCTTTTGGTTCTTGGACGAACT
256 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-T
* * *
128688 TT-CGAACTTGTCAAATTTTTACGAGTTCTTTTATAACTTCGATTCCTCAAAGTATTCAAGACGA
320 TTCCGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * **
128752 TCGATTCCTTCGAGCAATTCTCCAGACATTCCATGATCGAAAAATCG
385 TCCATTCCTTCGAGCAATTTTCGA-ACATTCCATGCTCGGGAAATCG
*
128799 CATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAAGTTTTTG-TCTTTGAATTAAAAAACTT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGATCTTTGAATT-AAAAACTT
* * * * *
128863 ATTTACGTGAGAATTATTTCTCTATTGGTTCTTGGACGAACTT-TCGAAGTAGTCAAACTTTTTA
64 ATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCT-AAACTTGTCAAAC-TTTTA
** * * ** * * * * *
128927 CAAGTTATTTAATAACTTCGGTTCCTTAAAGTATTCAAGGCAATCTATTCCTTCAAGCAATTCTC
127 TGAGTTCTTTTATAACTTCTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TT
* * * * *
128992 TAAACATACCATGCTCGAAAAATCACATCATTTGGTCTGAATAGTTTGTCATTTTGTAAACAAGC
191 TGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* ** *
129057 TTTGGTCTTTGAATTTAAAACTTATTTAAATGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACT
256 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-T
* *
129120 TT-CGAACTTGTCAAACTTTTA-ACAGTTCTTTTATAACTTCGCTTCCTTAAAGTATTCAGGACG
320 TTCCGAACTTGTCAAACTTTTACA-AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
** *
129183 ATCCATTCCTTCGAGCAATATACCGAACATTCGATGCTCGGGAAATCG
384 ATCCATTCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGGGAAATCG
* * * * * ** * *
129231 TATTATTTGGTGTAAATAGTTGGTCATTTTGGAAACATCTTTTGTTCTTTAAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAT
* * * * * * *
129296 TTA-AGTAAGAATTGTTTGTCTCTTGCTTTTTGGACAAACTTAC-GAACTTGTCAAA-TTTTATG
66 TTACA-TGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT-CTAAACTTGTCAAACTTTTATG
*
129358 AGTTCTTTTATAACTTCTCTTCCTTAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTTGTG
129 AGTTCTTTTATAACTTCTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TG
*** * *
129423 AACATTCCATGCTCGAGAAATTGTATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAATTTT
193 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
129488 TGGTCTTTGAATTAAAAATTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAATTTC
258 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTC
* * * *
129553 CAAACTTGTCAAACTTTTAAAAGTTCTTTTATAACTTCGATTCGTTGAAGTATTCAAGACGATCC
323 CGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCC
** * *
129618 ATTCCTTTTAGAAAATTTTCGAACATTCCATGCTTGGGAAATCG
388 ATTCCTTCGAG-CAATTTTCGAACATTCCATGCTCGGGAAATCG
* * * *
129662 CATCATTT-GTTTAAATAGTTTGTCATTTTGTAAACATGATTTGATCTTTGAATTAAGAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAT
* * *
129726 TTACATGAGAATTGTTTCTCT-TT-TTTCTTGGACGAACTTCTAAACTTCTCAAACTTTTATGAG
66 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTATGAG
** * *
129789 TTCTTTTATAACTTCTACTT-CTTGTAGTATTCAAGGCGATACATTCCTTCGAGCAATTTTCTGA
131 TTCTTTTATAACTTCT-CTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGA
* * * * *
129853 GCATTCCATGCTCGGGAAATCTCATCAATTGGTCTAAATAGTTTGTCATTTTGTCAACAAGTTTT
194 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* *
129918 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT-TGATTGGTTCTTGGACGAACTTC
259 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAATTTC
* * * * * *
129982 C-AATGTTGTTAAACTTTTACAAGTTCTTTTATAACTTCTG-TTCCTTAACGAATTCAAGGCAAT
323 CGAA-CTTGTCAAACTTTTACAAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGAT
* * * * * * *
130045 TCGTTCCTTCAAGCAATTCTCCGAACATTCCATGCTCAGAAAATCA
386 CCATTCCTTCGAGCAATT-TTCGAACATTCCATGCTCGGGAAATCG
* * *
130091 CATCAGTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTAT
1 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAT
* * * *
130156 TTACGTGAGAA--A-AT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTT
66 TTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTT
130211 CGAACATTCC
Statistics
Matches: 1549, Mismatches: 254, Indels: 88
0.82 0.13 0.05
Matches are distributed among these distances:
426 3 0.00
427 4 0.00
428 61 0.04
429 410 0.26
430 134 0.09
431 175 0.11
432 209 0.13
433 246 0.16
434 139 0.09
435 8 0.01
436 154 0.10
437 6 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (430 bp):
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTAT
TTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTATGAG
TTCTTTTATAACTTCTCTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAAC
ATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCCGA
ACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCG
Found at i:130518 original size:361 final size:363
Alignment explanation
Indices: 129854--130575 Score: 922
Period size: 361 Copynumber: 2.0 Consensus size: 363
129844 ATTTTCTGAG
** *
129854 CATTCCATGCTCGGGAAATCTCATCAATTGGTCTAAATAGTTTGTCATTTTGTCAACAAGTTTTG
1 CATTCCATGCTCGGGAAATCTCATCAATTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTG
* * * * *
129919 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTTGATTGGTTCTTGGACGAACTTCCA
66 GTCTTTAAATTAAAAACTTATTAACGTAAGAACTATTTCTTGATTGGTTCTTGGACGAACTTCCA
* * * * *
129984 ATGTTGTTAAACTTTTACAAGTTCTTTTATAACTTCTGTTCCTTAACGAATTCAAGGCAATTCGT
131 ATGTTGTCAAACTTTTACAAGTTCTTTTATAACATCTGTTCCTTAACGAATTCAAGACAATCCAT
*
130049 TCCTTCAAGCAATTCTCCGAACATTCCATGCTCAGAAAATCACATCAGTTGGTCTAAATAGTTTG
196 TCCTTCAAGCAATTCTCCGAACATTCCATGCTCAGAAAATCACATCAGTTGGTCTAAATAATTTG
* ** ** *
130114 TCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAA-AAT-TCTCTTG
261 TAATTTCCTAAACAAGTTTTAATCTTTAAATGAAAAACTTATTTACGTGAGAACAATCTCTCTTG
130177 GTTCTTGGATGAACTTCCAAACTTGTCAAACTTTCGAA
326 GTTCTTGGATGAACTTCCAAACTTGTCAAACTTTCGAA
* * *
130215 CATTCCATGCTCGGGAAATCGT-ATTATTTGGTCTAAATAG-TTGATCATTTTGGAAACATCTTT
1 CATTCCATGCTCGGGAAATC-TCATCAATTGGTCTAAATAGTTTG-TCATTTTGGAAACAACTTT
* * *
130278 TGTTCTTTAAATTAAAAACTTATTAATGTAAGAACTATTTCTCT-CTTGGTTCTTGGACGAACTT
64 TGGTCTTTAAATTAAAAACTTATTAACGTAAGAACTATTTCT-TGATTGGTTCTTGGACGAACTT
** * ** *
130342 CCGAAT-TTGTCAAACTTTTATGAGTTCTTTTATAACATC-GCTTCCTTAAGGTTTTCAAGACGA
128 CC-AATGTTGTCAAACTTTTACAAGTTCTTTTATAACATCTG-TTCCTTAACGAATTCAAGACAA
** *
130405 TCCATTCCTTTGAGCAATTTTCCGAACATTCCATGCTC-GAGAAATCACATCA-TTCGGTCTAAA
191 TCCATTCCTTCAAGCAATTCTCCGAACATTCCATGCTCAGA-AAATCACATCAGTT-GGTCTAAA
* **
130468 TAATTTGTAATTTCCTAAACAAGTTTTAATCTTTGAATGAAAAACTTATTTACGTGAGAATCCTT
254 TAATTTGTAATTTCCTAAACAAGTTTTAATCTTTAAATGAAAAACTTATTTACGTGAGAA--CAA
* * **
130533 TCTCTCTTGTTTCTTGGATGATCTTCTGAACTTGTCAAACTTT
317 TCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTT
130576 TATGAGTTCA
Statistics
Matches: 308, Mismatches: 42, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
360 8 0.03
361 257 0.83
362 5 0.02
364 1 0.00
365 37 0.12
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (363 bp):
CATTCCATGCTCGGGAAATCTCATCAATTGGTCTAAATAGTTTGTCATTTTGGAAACAACTTTTG
GTCTTTAAATTAAAAACTTATTAACGTAAGAACTATTTCTTGATTGGTTCTTGGACGAACTTCCA
ATGTTGTCAAACTTTTACAAGTTCTTTTATAACATCTGTTCCTTAACGAATTCAAGACAATCCAT
TCCTTCAAGCAATTCTCCGAACATTCCATGCTCAGAAAATCACATCAGTTGGTCTAAATAATTTG
TAATTTCCTAAACAAGTTTTAATCTTTAAATGAAAAACTTATTTACGTGAGAACAATCTCTCTTG
GTTCTTGGATGAACTTCCAAACTTGTCAAACTTTCGAA
Found at i:131115 original size:39 final size:38
Alignment explanation
Indices: 131065--131164 Score: 137
Period size: 39 Copynumber: 2.6 Consensus size: 38
131055 ATTAAATAGG
131065 GTTTTAATGTGTCTTAGTTTGATACATATTTAATAGTT
1 GTTTTAATGTGTCTTAGTTTGATACATATTTAATAGTT
* *
131103 GTTTGTAATGTGTATTATTTTGATACATATTTAATAGTT
1 GTTT-TAATGTGTCTTAGTTTGATACATATTTAATAGTT
* * *
131142 GTTTTTAAGGTATCTAAGTTTGA
1 G-TTTTAATGTGTCTTAGTTTGA
131165 GACAAATTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.08
39 46 0.87
40 3 0.06
ACGTcount: A:0.27, C:0.04, G:0.17, T:0.52
Consensus pattern (38 bp):
GTTTTAATGTGTCTTAGTTTGATACATATTTAATAGTT
Found at i:133040 original size:19 final size:18
Alignment explanation
Indices: 133018--133054 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
133008 ATCAAAAAGT
133018 CGAGAAAAAAAGAAAAATA
1 CGAGAAAAAAA-AAAAATA
*
133037 CGAGAAAAATAAAAAATA
1 CGAGAAAAAAAAAAAATA
133055 AAAAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.73, C:0.05, G:0.14, T:0.08
Consensus pattern (18 bp):
CGAGAAAAAAAAAAAATA
Found at i:133044 original size:18 final size:19
Alignment explanation
Indices: 133018--133054 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
133008 ATCAAAAAGT
133018 CGAGAAAAAA-AGAAAAATA
1 CGAGAAAAAATA-AAAAATA
133037 CGAG-AAAAATAAAAAATA
1 CGAGAAAAAATAAAAAATA
133055 AAAAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.73, C:0.05, G:0.14, T:0.08
Consensus pattern (19 bp):
CGAGAAAAAATAAAAAATA
Done.