Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012700.1 Kokia drynarioides strain JFW-HI SEQ_127711, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9576
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1703 original size:17 final size:17

Alignment explanation


    Indices: 1681--1744  Score: 56
    Period size: 17  Copynumber: 3.4  Consensus size: 17

       1671 CTTCAAAAGA

                             
       1681 AATAAAAAATAGAGTTC
          1 AATAAAAAATAGAGTTC

                          * *      
       1698 AATAAAAGTATGATGGTGCTGTC
          1 AATAAAA--A--ATAGAG-T-TC

                             
       1721 AATAAAAAATAGAGTTC
          1 AATAAAAAATAGAGTTC

                   
       1738 AATAAAA
          1 AATAAAA

       1745 GAGTGTCGAC


Statistics
Matches: 37,  Mismatches: 4, Indels: 12
        0.70            0.08        0.23

Matches are distributed among these distances:
  17   16  0.43
  18    1  0.03
  19    5  0.14
  21    5  0.14
  22    1  0.03
  23    9  0.24

ACGTcount: A:0.53, C:0.06, G:0.16, T:0.25


Consensus pattern (17 bp):   
AATAAAAAATAGAGTTC
Done.