Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012703.1 Kokia drynarioides strain JFW-HI SEQ_127714, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6832
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.34


Found at i:6008 original size:25 final size:23

Alignment explanation


    Indices: 5977--6040  Score: 92
    Period size: 23  Copynumber: 2.8  Consensus size: 23

       5967 AGTGCTGGGC

                           *       
       5977 AACAGAGAGCACACACAGCGCTA
          1 AACAGAGAGCACACAAAGCGCTA

                              *    
       6000 AACAGAGAGCACACAAAGTGCTA
          1 AACAGAGAGCACACAAAGCGCTA

             *  *             
       6023 ATCAAAGAGCACACAAAG
          1 AACAGAGAGCACACAAAG

       6041 TGCTGATAAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  23   37  1.00

ACGTcount: A:0.48, C:0.25, G:0.20, T:0.06


Consensus pattern (23 bp):   
AACAGAGAGCACACAAAGCGCTA

Found at i:6052 original size:23 final size:23

Alignment explanation


    Indices: 5982--6057  Score: 82
    Period size: 23  Copynumber: 3.3  Consensus size: 23

       5972 TGGGCAACAG

                      *  *         *
       5982 AGAGCACACACAGCGCTAA-ACAG
          1 AGAGCACACAAAGTGCTAATA-AA

                                *  
       6005 AGAGCACACAAAGTGCTAATCAA
          1 AGAGCACACAAAGTGCTAATAAA

                             *     
       6028 AGAGCACACAAAGTGCTGATAAA
          1 AGAGCACACAAAGTGCTAATAAA

              *    
       6051 AGGGCAC
          1 AGAGCAC

       6058 GAAACGTGCT


Statistics
Matches: 45,  Mismatches: 7, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
  23   45  1.00

ACGTcount: A:0.45, C:0.24, G:0.22, T:0.09


Consensus pattern (23 bp):   
AGAGCACACAAAGTGCTAATAAA
Done.