Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012704.1 Kokia drynarioides strain JFW-HI SEQ_127715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5254
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34


Found at i:1315 original size:12 final size:12

Alignment explanation


    Indices: 1298--1323  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1288 CAACTTGTTT

                        
       1298 GGTTGTATAGTG
          1 GGTTGTATAGTG

                        
       1310 GGTTGTATAGTG
          1 GGTTGTATAGTG

              
       1322 GG
          1 GG

       1324 AAGCGAGGAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38


Consensus pattern (12 bp):   
GGTTGTATAGTG

Found at i:2751 original size:24 final size:24

Alignment explanation


    Indices: 2707--2752  Score: 67
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       2697 AATCAATGTA

                          *         
       2707 AAATATATTATACTTATAAATCCT
          1 AAATATATTATACTAATAAATCCT

                                   
       2731 AAATATATTATAC-AATCAAATC
          1 AAATATATTATACTAAT-AAATC

       2753 TTCTAGAAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  23    2  0.10
  24   18  0.90

ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37


Consensus pattern (24 bp):   
AAATATATTATACTAATAAATCCT

Found at i:3074 original size:19 final size:19

Alignment explanation


    Indices: 3050--3087  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3040 ATCAACAATA

                               
       3050 ATTCACCAAAAAAAAACAT
          1 ATTCACCAAAAAAAAACAT

                               
       3069 ATTCACCAAAAAAAAACAT
          1 ATTCACCAAAAAAAAACAT

       3088 CAACAATATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16


Consensus pattern (19 bp):   
ATTCACCAAAAAAAAACAT
Done.