Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012705.1 Kokia drynarioides strain JFW-HI SEQ_127716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2311
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.27
Found at i:1332 original size:216 final size:215
Alignment explanation
Indices: 1--1762 Score: 2003
Period size: 214 Copynumber: 8.2 Consensus size: 215
* *
1 CAAAAGTTGTTGACAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* ** * * *
66 TTCGAAAAATTGCTCGAAGAAATACATCGTCTTCATTACTTTAAGGAATCA-AAGTTGTAAAAGA
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-TACTTTAACGAA-CAGAAGTTATAAAAGA
* * * * * * *
130 TCTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAAAAACCATGTGAGAAATAATTCTCATGTA
129 ACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTA
*
195 AATAAAATTTTAATTCAAAGAC
194 AATAAGATTTTAATTCAAAGAC
* * * *
217 CAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGATGTGATTTCCCAAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* * * * * * *
282 CTCGAAAAATTTCTCAAAGGAATGGATCATCATGAAACTTTAACGAA-GGAAGTTATAAAAGAAC
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAACGAACAGAAGTTATAAAAGAAC
* * * * * *
346 TTGTAAAAGTTTTACAAGTTCGGAAGTTCGT-CATAGAATCAAAAGAGAAATAATTCTCACATAA
131 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCACGTAA
* **
410 ATAAG-TCTTCAAACCAAAGAC
195 ATAAGAT-TTTAATTCAAAGAC
** * * * *
431 CAAAACAT-TTTA-AAATATGAC-AA--ATTTAGACCAAATAACGCGATTTCACG-GCAATGGAA
1 CAAAAGTTGTTTACAAA-ATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGC-ATGGAA
* * * *
490 TATTCGAAAAATTGATCGAAGGAATGAATCGTCTTGAATACTTTAAGGAATC-GAAGTTATAAAA
64 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTG-ATACTTTAACGAA-CAGAAGTTATAAAA
*
554 GAACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTCACG
127 GAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACG
618 TAAATAAGATTTTAATTCAAAGAC
192 TAAATAAGATTTTAATTCAAAGAC
* * **
642 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATCAAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* *
707 TTCGAAAAATTGCTTC-AAGGAATGAATCGTCTT-ATACCTTAACGAACAGAAGTTATAAAAGAA
66 TTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGATACTTTAACGAACAGAAGTTATAAAAGAA
* * * ** *
770 CTCGTAAAAGTTTGACAAGTTCGAAAGTTCGCCCAAGATTCAAGAGAGAAATAATTGTCACGTAA
130 CTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAA
835 ATAAGATTTTAATTCAAAGAC
195 ATAAGATTTTAATTCAAAGAC
* * ** * * **
856 CAAATGTTGTTTATAAAATGACAAAAGATTTAGACCAAATGATGCGATTTCTCGAGCATCAAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* *
921 TTCGAAAAATTGCTTGAAGGAATGGATCGTCTT-ATACTTTAACGAGCAGAAGTTATAAAAGAAC
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAACGAACAGAAGTTATAAAAGAAC
* * * *
985 CCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAA
131 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAA
* *
1050 TAAGTTTTTAATTCAAACAC
196 TAAGATTTTAATTCAAAGAC
*
1070 CAAAAGTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* * * * **
1135 TTCGAAAAATTGCTCGAAGGAATGCATCGTCTTCATTACTTTAAGGAATAGATTTTATAAAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-TACTTTAACGAACAGAAGTTATAAAAGAA
* * * * * *
1200 CTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAAAAACCATGTGAGAAATAATTCTCATGTAA
130 CTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAA
1265 ATAAGATTTTAATTCAAAGAC
195 ATAAGATTTTAATTCAAAGAC
* * * *
1286 CAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGATGTGATTTCCCAAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
* * * * * * * *
1351 CTCAAAAAATTTCTCAAAGGAATGGATCATCATGAAACTTTAACGAA-GGAAGTTATAAAAGAAC
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAACGAACAGAAGTTATAAAAGAAC
* * * * *
1415 TTGTAAAAGTTTTACAAGTTCGGAAGTTCGT-CATAGAATCAAGAGAGAAATAATTCTCACATAA
131 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCACGTAA
* **
1479 ATGAG-TCTTTAAACCAAAGAC
195 ATAAGAT-TTTAATTCAAAGAC
** * * * *
1500 CAAAACAT-TTTA-AAATATGAC-AA--ATTTAGACCAAATAACGCGATTTCTCG-GCAATGGAA
1 CAAAAGTTGTTTACAAA-ATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGC-ATGGAA
* * * * *
1559 TATTCGAAAAATTGATGGAAGGAATGGATCGTCTTGA-ACAATTTAATGAACCGAAGTTATAAAA
64 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATAC--TTTAACGAACAGAAGTTATAAAA
* * * * *
1623 GAACTCGTAAAAGTTTGACAATATTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACG
127 GAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACG
* * * *
1688 AAAATAAG-TTTTCGATTTAAACAC
192 TAAATAAGATTTT-AATTCAAAGAC
* *
1712 CAAAACTT-TTTCACAAAATGACAAACTATTTAGACCGAATGATGTGATTTC
1 CAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTC
1763 ACAAAGGAAT
Statistics
Matches: 1308, Mismatches: 202, Indels: 72
0.83 0.13 0.05
Matches are distributed among these distances:
209 6 0.00
210 108 0.08
211 79 0.06
212 144 0.11
213 85 0.06
214 513 0.39
215 79 0.06
216 294 0.22
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (215 bp):
CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAACGAACAGAAGTTATAAAAGAAC
TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAA
TAAGATTTTAATTCAAAGAC
Found at i:1438 original size:430 final size:429
Alignment explanation
Indices: 1--1762 Score: 1968
Period size: 426 Copynumber: 4.1 Consensus size: 429
* * *
1 CAAAAGTTGTTGACAAAATGACAAACAATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* ** * * * ** * *
66 TTCGAAAAATTGCTCGAAGAAATACATCGTCTTCATTACTTTAAGGAATCAAAGTTGTAAAAGAT
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-AACTTTAACGAATGGAAGTTATAAAAGAA
* * * * * *
131 CTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAAAAACCATGTGAGAAATAATTCTCATGTAA
130 CTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAA
** * *
196 ATAAAATTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGATG
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAGACCAAATGATG
* * * * * * * *
261 TGATTTCCCAAGCATGGAATGCTCGAAAAATTTCTCAAAGGAATGGATCATCATGAAACTTTAAC
259 CGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAAC
* * * * *
326 GAA-GGAAGTTATAAAAGAACTTGTAAAAGTTTTACAAGTTCGGAAGTTCGT-CATAGAATCAAA
324 GAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAATCAAG
* * **
389 AGAGAAATAATTCTCACATAAATAAG-TCTTCAAACCAAAGAC
388 AGAGAAATAATTCTCACGTAAATAAGAT-TTTAATTCAAAGAC
** * * *
431 CAAAACAT-TTTA-AAATATGAC-AA--ATTTAGACCAAATAACGCGATTTCACG-GCAATGGAA
1 CAAAAGTTGTTTACAAA-ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC-ATGGAA
* * * * *
490 TATTCGAAAAATTGATCGAAGGAATGAATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAG
64 TGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAA-ACTTTAACGAATGGAAGTTATAAAAG
*
555 AACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAACAAAGAGAGAAATAATTCTCACGT
128 AACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
*
619 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAGACCAAATGA
* ** * *
684 TGCGATTTCTCGAGCATCAAATGTTCGAAAAATTGCTTC-AAGGAATGAATCGTCTT-ATACCTT
257 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGTCTTGATACTTT
* * * *
747 AACGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGCCCAAGATTCA
321 AACGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCA
*
812 AGAGAGAAATAATTGTCACGTAAATAAGATTTTAATTCAAAGAC
386 AGAGAGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGAC
* * ** * **
856 CAAATGTTGTTTATAAAATGACAAAAGATTTAGACCAAATGATGCGATTTCTCGAGCATCAAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * ***
921 TTCGAAAAATTGCTTGAAGGAATGGATCGTCTT-ATACTTTAACGAGCAGAAGTTATAAAAGAAC
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAACTTTAACGAATGGAAGTTATAAAAGAAC
* * * *
985 CCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAA
131 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAA
* * *
1050 TAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGT
196 TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-AAAATGACAAACTATTTAGACCAAATGATGC
* * *
1115 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGCATCGTCTTCATTACTTTAAG
260 GATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA-TACTTTAAC
* ** * * * * * *
1180 GAATAGATTTTATAAAAGAACTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAAAAACCATGT
324 GAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCAAGA
*
1245 GAGAAATAATTCTCATGTAAATAAGATTTTAATTCAAAGAC
389 GAGAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGAC
* * * * *
1286 CAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGATGTGATTTCCCAAGCATGGAATG
1 CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * *
1351 CTCAAAAAATTTCTCAAAGGAATGGATCATCATGAAACTTTAACGAA-GGAAGTTATAAAAGAAC
66 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAACTTTAACGAATGGAAGTTATAAAAGAAC
* * * * *
1415 TTGTAAAAGTTTTACAAGTTCGGAAGTTCGT-CATAGAATCAAGAGAGAAATAATTCTCACATAA
131 TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAACCAAGAGAGAAATAATTCTCACGTAA
* * ** ** * *
1479 ATGAGTCTTTAAACCAAAGACCAAAACAT-TTTAAAATATGAC-AA--ATTTAGACCAAATAACG
195 ATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAA-ATGACAAACTATTTAGACCAAATGATG
* * * *
1540 CGATTTCTCG-GCAATGGAATATTCGAAAAATTGATGGAAGGAATGGATCGTCTTGA-ACAATTT
259 CGATTTCCCGAGC-ATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATAC--TTT
* * * * * *
1603 AATGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAATATTGGAAGTTCATCCAAGAACCA
321 AACGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCA
* * * * * *
1668 AGAGAGAAACAATTCCCACGAAAATAAG-TTTTCGATTTAAACAC
386 AGAGAGAAATAATTCTCACGTAAATAAGATTTT-AATTCAAAGAC
* * *
1712 CAAAACTT-TTTCACAAAATGACAAACTATTTAGACCGAATGATGTGATTTC
1 CAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTC
1763 ACAAAGGAAT
Statistics
Matches: 1140, Mismatches: 167, Indels: 54
0.84 0.12 0.04
Matches are distributed among these distances:
424 13 0.01
425 239 0.21
426 310 0.27
427 51 0.04
428 158 0.14
429 79 0.07
430 279 0.24
431 11 0.01
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (429 bp):
CAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAAACTTTAACGAATGGAAGTTATAAAAGAAC
TCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAAAAATGACAAACTATTTAGACCAAATGATGCG
ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGATACTTTAACGA
ACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCAAGAGA
GAAATAATTCTCACGTAAATAAGATTTTAATTCAAAGAC
Found at i:1903 original size:187 final size:188
Alignment explanation
Indices: 1577--1933 Score: 413
Period size: 187 Copynumber: 1.9 Consensus size: 188
1567 AAATTGATGG
* * * *
1577 AAGGAATGGATCGTCTTGAACAATTTAATGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
1 AAGGAATGGACCATCTTGAACAATTTAACGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGAC
* * * ***
1642 AATATTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGAAAATAAGTTTTCGATTTA
66 AATACTGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGAAAATAAGTTTTCAAACCA
*
1707 AACACCAAAACTTTTTCACAAA-ATGACAAACTATTTAGACCGAATGATGTGATTTCACA
131 AACACCAAAACATTTT-A-AAATATGACAAACTATTTAGACCGAATGATGTGATTTCACA
* * * *
1766 AAGGAATGGACCATCTTGAA-ACTTTAACGAA-GGAAGTTAAAAAAGAACTTGTAAAAGTTTTAC
1 AAGGAATGGACCATCTTGAACAATTTAACGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGAC
* * * * *
1829 AAGT-CTGAAAGTTCGT-CATAGAATCAAGAGAGAAATAATTCTCAC-ATAAATCAGTCTTT-AA
66 AA-TACTGAAAGTTCATCCA-AGAACCAAGAGAGAAACAATTCCCACGA-AAATAAGT-TTTCAA
* *
1890 ACCAAAGACCAAAACATTTTAAAATATGACAATCTATTTAGACC
127 ACCAAACACCAAAACATTTTAAAATATGACAAACTATTTAGACC
1934 AAATAACGCG
Statistics
Matches: 141, Mismatches: 22, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
185 3 0.02
186 22 0.16
187 85 0.60
188 13 0.09
189 18 0.13
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.26
Consensus pattern (188 bp):
AAGGAATGGACCATCTTGAACAATTTAACGAACCGAAGTTAAAAAAGAACTCGTAAAAGTTTGAC
AATACTGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGAAAATAAGTTTTCAAACCA
AACACCAAAACATTTTAAAATATGACAAACTATTTAGACCGAATGATGTGATTTCACA
Found at i:2176 original size:215 final size:215
Alignment explanation
Indices: 1798--2291 Score: 597
Period size: 215 Copynumber: 2.3 Consensus size: 215
1788 TTTAACGAAG
* * *
1798 GAAGTTAAAAAAGAACTTGTAAAAGTTTTACAAG-TCTGAAAGTTCGT-CATAGAATCAAGAGAG
1 GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGATC-GGAAGTTCGTCCA-AGAATCAAGAGAG
* *
1861 AAATAATTCTCACATAAATCAGTCTTTAAACCAAAGACCAAAACATTTTAAAATATGACAATCTA
64 AAATAATTCTCACATAAATAAGTCTTTAAACCAAAGACCAAAACATTTTAAAATATGACAAACTA
* **
1926 TTTAGACCAAATAACGCGATTCCACGGGAATGGAATATTTGAAAAATTGATCGAAGAAATGGATC
129 TTTAGACCAAATAACGCGATTCCACGGGAATGGAATACTCAAAAAATTGATCGAAGAAATGGATC
* * *
1991 GTCTTGAATACTTTAAGGAGTC-
194 GTCTTGAACAATTTAAGGA-ACA
* * *
2013 GAAGTTATAAAATAACTTGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAATGAAGGGAGAA
1 GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCAAGAGAGAA
* ** ***
2077 ATAATTCTCACGTAAATAAGAT-TTTAATTCAAAGACCAAATGTTGTTTACAAA-ATGACAAACT
66 ATAATTCTCACATAAATAAG-TCTTTAAACCAAAGACCAAAACAT-TTTA-AAATATGACAAACT
* * * * * *
2140 ATTTAGACCAAATGATGCGATTTCC-CGTGCATGGAATGCTCAAAAAATTGATCGAAGGAATGGA
128 ATTTAGACCAAATAACGCGA-TTCCACGGGAATGGAATACTCAAAAAATTGATCGAAGAAATGGA
*
2204 TCGTCTTGAACAATTTAATGAACA
192 TCGTCTTGAACAATTTAAGGAACA
* * * *
2228 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAACATCGGAAGTTCGTCCAAGAACCCAGAGAGA
1 GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCAAGAGAGA
2292 GACAATTCCT
Statistics
Matches: 237, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
214 57 0.24
215 149 0.63
216 31 0.13
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (215 bp):
GAAGTTATAAAAGAACTTGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAATCAAGAGAGAA
ATAATTCTCACATAAATAAGTCTTTAAACCAAAGACCAAAACATTTTAAAATATGACAAACTATT
TAGACCAAATAACGCGATTCCACGGGAATGGAATACTCAAAAAATTGATCGAAGAAATGGATCGT
CTTGAACAATTTAAGGAACA
Done.