Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012709.1 Kokia drynarioides strain JFW-HI SEQ_127720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5246
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.27

Warning! 150 characters in sequence are not A, C, G, or T


Found at i:1939 original size:17 final size:17

Alignment explanation


    Indices: 1913--1951  Score: 51
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1903 CTAACGGACT

                 *      *  * 
       1913 TAACTTCTGCTAGCTGC
          1 TAACTACTGCTAACTAC

                             
       1930 TAACTACTGCTAACTAC
          1 TAACTACTGCTAACTAC

                 
       1947 TAACT
          1 TAACT

       1952 GTAGTCATCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  17   19  1.00

ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33


Consensus pattern (17 bp):   
TAACTACTGCTAACTAC
Done.