genome.fa.s12716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012716.1 Kokia drynarioides strain JFW-HI SEQ_127727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198044

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3903--3952	18	2.6	19	77	22	52	48	0	0	52	1.00
3968--4007	13	2.9	14	82	17	57	55	0	0	45	0.99
4026--4062	15	2.6	15	83	8	51	48	0	0	51	1.00
5037--5064	6	4.7	6	100	0	56	50	0	0	50	1.00
5022--5071	17	2.9	18	82	11	61	58	0	0	42	0.98
5326--5371	24	1.9	24	90	0	74	41	21	13	23	1.88
6103--6155	25	2.1	26	82	3	63	45	0	1	52	1.11
6153--6196	10	4.4	10	80	8	54	31	2	0	65	1.05
7508--7586	17	4.9	17	70	20	62	10	6	17	65	1.43
7523--7580	28	2.0	28	86	3	80	12	6	17	63	1.49
7582--7620	15	2.6	15	87	0	51	7	0	20	71	1.10
7774--7820	24	1.9	25	82	4	60	27	2	10	59	1.42
11081--11135	22	2.6	21	82	2	74	38	1	0	60	1.08
12281--12311	7	4.4	7	100	0	62	54	0	12	32	1.38
31183--31240	26	2.2	27	81	9	75	44	0	0	55	0.99
31200--31240	21	2.0	21	95	4	75	41	0	0	58	0.98
34078--34139	14	4.8	12	82	13	70	40	9	1	48	1.46
34069--34139	26	2.7	26	84	8	81	42	11	1	45	1.48
42543--42598	25	2.3	26	79	17	66	19	0	7	73	1.06
42940--42998	15	3.8	15	77	16	57	57	1	11	28	1.44
42937--42974	14	2.6	15	83	8	51	55	2	13	28	1.51
44095--44152	21	2.6	22	84	10	66	31	0	1	67	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47964--47988	5	5.0	5	100	0	50	40	0	0	60	0.97
49465--49530	27	2.4	28	82	9	75	53	0	1	45	1.09
49545--49574	15	1.9	16	93	6	53	50	3	6	40	1.45
49620--49700	23	3.4	24	72	17	62	50	2	2	44	1.28
49669--49721	23	2.3	24	81	15	67	49	5	5	39	1.50
51083--51120	19	2.0	19	85	10	51	34	10	2	52	1.50
54137--54196	26	2.2	28	83	16	74	56	6	11	25	1.59
63652--63694	19	2.1	21	83	8	54	65	0	2	32	1.06
80039--80085	18	2.6	18	82	0	58	17	21	36	25	1.94
83633--83692	23	2.6	23	78	5	68	30	8	20	41	1.81
83657--83702	23	2.0	23	83	8	58	39	4	17	39	1.69
92329--92420	36	2.6	36	98	0	175	30	18	15	35	1.92
92354--92413	21	3.1	21	60	26	51	33	20	15	31	1.93
92329--92437	36	3.1	34	92	5	150	31	19	14	34	1.92
94385--94433	24	2.0	25	88	11	75	73	0	16	10	1.09
101072--101181	23	4.9	22	79	9	105	12	23	26	37	1.91
101072--101181	45	2.4	46	76	7	127	12	23	26	37	1.91
103475--103549	33	2.3	33	75	9	80	30	24	16	29	1.96
103470--103697	102	2.2	102	88	3	325	29	25	14	29	1.95
114643--114669	2	13.5	2	100	0	54	51	0	0	48	1.00
115564--115749	73	2.6	71	79	4	214	31	22	12	33	1.91
124092--124143	26	2.0	26	88	0	77	9	9	3	76	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124092--124155	26	2.4	25	82	5	74	9	7	4	78	1.09
131678--131735	30	2.0	29	83	10	73	46	0	3	50	1.18
132449--132512	32	2.0	32	82	11	78	46	6	4	42	1.49
133961--133994	3	11.3	3	87	0	50	32	5	0	61	1.20
139660--139710	25	2.0	25	100	0	102	25	11	11	50	1.72
143499--143592	47	2.0	47	100	0	188	38	12	12	36	1.82
146552--146654	37	2.7	39	76	15	117	33	2	29	34	1.72
148949--148993	24	2.0	22	82	8	54	44	13	0	42	1.43
152571--152727	80	2.0	80	82	2	190	30	11	8	49	1.68
164263--164288	6	4.3	6	100	0	52	80	0	0	19	0.71
168590--168634	22	2.0	22	83	8	56	64	6	2	26	1.30
173095--173145	24	2.1	24	88	0	75	21	9	11	56	1.63
173107--173155	24	2.0	24	84	7	64	24	12	12	51	1.73
174446--174613	77	2.2	77	93	1	284	51	5	23	19	1.69
175754--175788	12	2.8	13	82	8	54	31	0	2	65	1.07
182169--182205	17	2.2	17	90	0	56	21	2	8	67	1.29

Tables:   1

The End!