genome.fa.s12720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012720.1 Kokia drynarioides strain JFW-HI SEQ_127731, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115899

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2137--2179	17	2.5	17	84	3	59	18	0	25	55	1.42
5627--5856	30	7.8	30	76	12	172	41	4	20	33	1.73
5730--5834	29	3.7	28	80	10	81	42	5	20	31	1.75
5628--5906	30	9.4	29	74	12	121	40	4	21	33	1.73
5817--5917	30	3.4	30	77	15	102	38	2	20	37	1.68
6961--7090	38	3.4	37	72	9	93	32	13	20	33	1.91
7039--8051	42	24.5	41	78	8	828	29	16	24	30	1.96
7039--8051	81	12.3	80	78	9	771	29	16	24	30	1.96
6980--7964	451	2.2	445	81	6	1186	29	16	23	31	1.96
7871--8051	94	1.9	94	86	2	256	26	16	22	34	1.95
8035--8073	17	2.3	17	95	0	69	25	5	33	35	1.78
7993--8110	59	2.0	59	85	3	157	26	12	28	32	1.93
8084--8198	39	2.8	42	81	7	146	31	16	20	31	1.95
8339--8389	21	2.4	21	80	6	59	25	19	13	41	1.88
8424--8871	99	4.5	100	76	6	252	19	31	15	34	1.93
8525--8861	50	6.8	50	76	6	267	19	31	14	34	1.92
8481--8869	149	2.6	146	82	4	442	19	31	14	34	1.91
8578--8852	98	2.8	97	79	5	302	19	33	13	33	1.91
9309--9519	112	1.9	115	85	3	302	38	12	19	29	1.89
9829--9881	19	2.9	18	88	8	72	0	20	0	79	0.74
9830--9879	10	5.3	10	75	20	54	0	22	0	78	0.76
9830--9892	18	3.4	18	85	8	74	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10334--10497	81	2.0	81	93	0	283	26	15	17	39	1.90
10794--10830	15	2.5	15	91	8	58	0	13	0	86	0.57
10783--10830	13	3.8	12	83	8	60	2	14	0	83	0.74
12279--12323	22	2.0	22	100	0	90	26	17	22	33	1.96
15090--15334	30	8.2	29	71	7	118	44	4	18	33	1.70
15241--15311	29	2.4	29	90	0	106	46	1	15	36	1.55
20094--20194	10	10.7	9	68	18	55	65	1	4	27	1.24
20094--20202	19	5.6	19	72	16	73	64	1	4	29	1.24
20104--20147	21	2.0	22	95	4	81	70	0	4	25	1.06
20144--20202	28	2.1	29	72	18	52	62	3	5	28	1.32
20454--20530	19	4.1	19	73	11	61	28	3	3	63	1.30
20647--20820	87	2.0	86	80	3	197	33	7	17	40	1.78
21063--21111	22	2.1	22	85	11	62	16	8	4	71	1.26
33458--33515	21	2.8	21	78	0	71	29	20	17	32	1.95
40683--40734	21	2.5	21	87	0	68	36	19	15	28	1.92
46778--46817	16	2.5	17	84	15	59	22	2	0	75	0.93
47763--47856	30	3.2	30	71	7	93	43	20	2	34	1.64
50492--50589	30	3.3	30	71	5	81	41	22	2	33	1.65
57093--57117	13	1.9	13	100	0	50	24	8	40	28	1.83
67542--67648	50	2.1	50	86	3	144	29	1	14	54	1.50
69134--69288	32	4.9	32	79	5	145	25	18	19	36	1.95
69134--69288	63	2.4	64	85	5	199	25	18	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69179--69633	32	14.4	31	80	4	446	29	17	16	35	1.92
69179--69845	127	5.2	127	81	5	701	29	17	16	35	1.92
69592--69676	42	2.0	43	88	2	127	30	18	14	36	1.91
69634--69944	32	9.6	32	83	0	289	30	17	16	35	1.92
69496--69771	138	2.0	139	88	3	414	30	17	15	36	1.91
69465--69800	170	2.0	170	87	3	489	29	17	16	36	1.92
70551--70645	47	2.0	47	100	0	190	25	8	25	41	1.83
71561--71608	4	12.0	4	95	0	60	0	25	8	66	1.19
72878--72905	3	9.3	3	100	0	56	35	0	32	32	1.58
74891--74989	49	2.0	49	96	0	180	47	5	19	28	1.70
85342--85408	25	2.6	25	74	9	64	29	2	2	64	1.23
85397--85424	8	3.5	8	100	0	56	32	0	0	67	0.91
86440--86503	20	3.4	19	76	12	60	37	17	14	31	1.89
91403--91566	82	2.0	82	95	0	292	29	25	21	23	1.99
91420--91786	181	2.0	183	89	3	560	28	26	22	22	1.99
95098--95151	17	2.9	18	76	15	65	40	14	14	29	1.86
96988--97195	30	7.0	29	75	4	148	34	18	4	42	1.71
96988--97180	60	3.2	59	77	7	185	34	16	5	43	1.70
106744--107000	128	2.0	127	97	1	496	28	17	27	26	1.97
109486--109923	38	11.3	38	75	7	333	35	23	14	26	1.94
109481--109925	78	5.7	77	87	2	561	35	23	14	26	1.93
109481--109923	156	2.8	156	85	2	622	35	23	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111756--111868	30	3.8	30	87	3	156	34	22	6	37	1.79

Tables:   1

The End!