genome.fa.s12722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012722.1 Kokia drynarioides strain JFW-HI SEQ_127733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95894

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1268--1330	32	1.9	34	93	6	112	50	6	14	28	1.67
3887--3960	17	4.4	17	75	0	76	36	4	5	54	1.43
4177--4212	17	2.1	18	89	5	56	58	13	25	2	1.49
5317--5573	30	8.6	28	76	12	160	36	19	2	42	1.64
5328--5556	120	1.9	120	83	5	302	36	20	2	41	1.66
5325--5579	60	4.2	60	77	9	252	35	19	2	42	1.64
6473--6528	29	1.9	29	92	0	94	28	10	10	50	1.71
6474--6535	29	2.1	29	84	0	79	29	11	14	45	1.80
10612--10636	10	2.5	10	100	0	50	84	0	8	8	0.79
11728--12409	98	6.9	98	85	2	778	38	18	25	18	1.93
11728--12393	49	13.6	50	66	13	303	38	18	25	18	1.93
11730--12422	295	2.4	294	82	2	872	38	18	25	18	1.93
11730--12491	197	3.9	194	80	5	690	38	19	24	17	1.93
12699--12922	39	5.7	39	71	9	161	27	31	16	24	1.96
12687--12962	78	3.5	78	83	2	338	28	31	15	23	1.95
13452--13495	23	1.9	23	90	9	72	36	4	2	56	1.32
13445--13503	23	2.4	25	78	16	70	42	3	1	52	1.28
14926--15092	60	2.8	61	79	6	169	35	22	2	38	1.70
14943--15105	61	2.7	61	79	5	179	34	23	3	38	1.73
14926--15107	30	6.0	31	81	6	151	34	23	3	38	1.71
15053--15122	30	2.3	30	82	4	79	37	21	2	38	1.68
17622--17693	33	2.2	33	85	7	94	69	2	15	12	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25881--25960	34	2.3	34	81	14	92	28	0	7	63	1.21
27030--27085	24	2.3	25	75	9	62	64	8	3	23	1.38
28637--28667	15	2.1	15	94	5	55	54	12	25	6	1.62
29664--29697	15	2.2	16	89	5	52	67	0	0	32	0.91
33890--33923	10	3.4	10	87	0	50	5	0	14	79	0.91
33887--33934	20	2.4	21	86	10	66	10	2	10	77	1.09
41281--41328	14	3.4	14	82	2	60	29	0	4	66	1.10
52804--52865	24	2.6	24	100	0	124	51	29	19	0	1.47
53164--53188	9	2.8	9	100	0	50	36	20	12	32	1.89
55920--55950	6	5.2	6	100	0	62	32	0	67	0	0.91
55922--55974	14	3.9	14	79	13	58	33	0	58	7	1.26
60082--60150	36	1.9	34	83	13	86	60	2	1	34	1.20
62209--62257	23	2.1	24	82	17	59	28	4	16	51	1.63
62294--62318	5	5.0	5	100	0	50	20	0	0	80	0.72
73496--73561	31	2.1	31	88	5	98	33	15	12	39	1.84
75026--75072	16	2.9	16	87	9	60	53	2	27	17	1.55
77912--78017	31	3.5	31	72	20	98	45	10	19	24	1.82
85190--85257	32	2.2	32	83	2	84	32	10	11	45	1.74
86817--86859	20	2.1	21	91	4	70	41	9	9	39	1.69
89630--89706	8	9.4	8	75	18	61	37	2	1	58	1.20
90230--90288	23	2.5	24	75	5	66	50	3	0	45	1.18

Tables:   1

The End!