Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012724.1 Kokia drynarioides strain JFW-HI SEQ_127735, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7942
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33


Found at i:4119 original size:17 final size:17

Alignment explanation


    Indices: 4099--4133  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       4089 AAAATGCAGG

                             
       4099 GACAATAAAAATGAAAT
          1 GACAATAAAAATGAAAT

                  **         
       4116 GACAATTTAAATGAAAT
          1 GACAATAAAAATGAAAT

             
       4133 G
          1 G

       4134 CATGCAACTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.57, C:0.06, G:0.14, T:0.23


Consensus pattern (17 bp):   
GACAATAAAAATGAAAT
Done.