Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012726.1 Kokia drynarioides strain JFW-HI SEQ_127737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5088
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4657 original size:17 final size:18

Alignment explanation


    Indices: 4635--4678  Score: 65
    Period size: 17  Copynumber: 2.6  Consensus size: 18

       4625 TAATTTTAAT

                              
       4635 GTTTTTATTTAT-TTTTG
          1 GTTTTTATTTATGTTTTG

                      *       
       4652 GTTTTT-TTTTTGTTTTG
          1 GTTTTTATTTATGTTTTG

                      
       4669 GTTTTTATTT
          1 GTTTTTATTT

       4679 GGGCCCAAAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  16    4  0.17
  17   17  0.71
  18    3  0.12

ACGTcount: A:0.07, C:0.00, G:0.14, T:0.80


Consensus pattern (18 bp):   
GTTTTTATTTATGTTTTG
Done.