Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012731.1 Kokia drynarioides strain JFW-HI SEQ_127742, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1923
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36


Found at i:985 original size:23 final size:23

Alignment explanation


    Indices: 959--1011  Score: 88
    Period size: 23  Copynumber: 2.3  Consensus size: 23

        949 AACGCAAATT

                *        *         
        959 AGTAGGCACACGAGGTGCGAAAC
          1 AGTAAGCACACGAAGTGCGAAAC

                                   
        982 AGTAAGCACACGAAGTGCGAAAC
          1 AGTAAGCACACGAAGTGCGAAAC

                   
       1005 AGTAAGC
          1 AGTAAGC

       1012 GCGCTAGCGT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  23   28  1.00

ACGTcount: A:0.40, C:0.21, G:0.30, T:0.09


Consensus pattern (23 bp):   
AGTAAGCACACGAAGTGCGAAAC
Done.