Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012739.1 Kokia drynarioides strain JFW-HI SEQ_127750, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12948
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:5460 original size:21 final size:21

Alignment explanation


    Indices: 5434--5482  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       5424 TAGAAGTAAG

                  *         *    
       5434 ACTTGTTTCAGTAAAAGAGTC
          1 ACTTGTATCAGTAAAACAGTC

                         *   *   
       5455 ACTTGTATCAGTAGAACTGTC
          1 ACTTGTATCAGTAAAACAGTC

                   
       5476 ACTTGTA
          1 ACTTGTA

       5483 CCGATAGAAG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Consensus pattern (21 bp):   
ACTTGTATCAGTAAAACAGTC
Done.