Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012740.1 Kokia drynarioides strain JFW-HI SEQ_127751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 329122
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:495 original size:215 final size:216
Alignment explanation
Indices: 2--1761 Score: 1997
Period size: 215 Copynumber: 8.2 Consensus size: 216
1 T
* * *
2 CTTATTTACGTGAGAATTG-TT-TCTCTTGGCTCTTGGACGAACTTTCGAACTTTTCAAACTCTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
** *
65 ACGAGTTCTTTTATAACTTCGGTTTTTTAGAGTATTC-A-A-G----A--CCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
121 TTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAAA
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
186 TTTTGATCTTTGAATTAAATA
196 TTTTGATCTTTGAATTAAAAA
* * * * * *
207 CTTATTTACGTGACAATTGTTTCTCTTTTAGTTCTTGGATGAACTTCCGAACTTGTCAAAATTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* ** * * * * * *
272 ACGAGTTCTTTTATAATTTTTGTTCCATAAGGTGTTCTAGACGATCCATTCCTTTGAGCAATTTC
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* *
337 TCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TGCATTTTGTAAA-AG
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT-CATTTTGTAAACAA
* * * *
400 GTTTGGTTGTTTGTATTAAAAA
195 GTTTTGATCTTTGAATTAAAAA
* *
422 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGTACGAACTTTCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
487 ATGAGTTCTTTCATAACATCAGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGTAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
552 TTGAACATTCTATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAAAAAA
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAA
* * *
617 GTTTTGTTGTTTGAATTATAAA
195 GTTTTGATCTTTGAATTAAAAA
* * *
639 CTTATTTAGGTGAGAATTG-TT-TGTCTTGGTTCTTGGACGAACTTTCGAACTTTTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * **
702 ACGAGTACTTTTATAACTTCGATTCCATAAAGTATTCAGGACGATCCTTTAATTCGAGCAA-TTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * **
766 TCTGAACATTCCATGCTCTGGAAATCGTATCATTTGGTCTAAATTGTTTGTCACATTGTAAACAA
131 TC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
831 GTTTTGCTCTTTGGATTAAAAA
195 GTTTTGATCTTTGAATTAAAAA
* * * * * *
853 CTTATTT-CGTGAGAATTGTTACTCTCTCGGTTCTAGGACGAACGTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
*
917 ACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGACGATCCATTCCATT-GAGCAATTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTT
* * * * * * *
981 TT-GAACATTCCCTTCTCCGAAAATCGCATCATTTAGTCTAAATAGTTTTTCATATTGTAAACAA
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC--
* * *** *
1045 AAGTTTTGGTCTTTAAAACGAAAT
193 AAGTTTTGATCTTTGAATTAAAAA
* * * * * *
1069 CTTATTTACGTGAGAATTGTTTCTCTC--AGCTCTTAGATGAACTTTCGAACTTTTCAAACTCTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
*
1132 ACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
1196 TCGAACATTCCTTGCTCGGGAAATCGCATCATTTGCTCTAAATAGTTTGTCATTTTGTAAACAAC
131 TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
1261 TTTTGATCTTAGAATTTAACA
196 TTTTGATCTTTGAATTAAAAA
* * * *
1282 CTTATTTACGTGAGGATT-TTTCTCCCTTGTTTCTTGGACGAACTTTCGAAATTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
1346 ACGACTTCTTTT-TCAACTTCGATTCCTTAAAGTGTTCAAGACAATCCACTCATTCGAGCAATTT
66 ACGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
** ** * * * * *
1410 TTCGAACATTCCATTTTCGAAAAATCGTAGCATTAGGTATAAATATTTTGTCATTTTGTAAACAA
130 TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
1475 CTTTTCATGTTTGAATTAAAAGAA
195 GTTTTGATCTTTGAATT-AAA-AA
* * * * * *
1499 GTT-TTCTACATGGGAATTGTTTCTCTCTTGGTTCTTGGACAAAC-TTCTGAACTCGTCAAAATT
1 CTTATT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTT
* * * *
1562 TTACGAGTTCTTTTATAACTTCGGTTGCTTAAAGTATTCAAGGCGATCCATTTCTTCAAGCAATT
64 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
1627 TTTCGATCATTCCATGCTCGGGAAATTGCATCATTCGATCTAAATTGTTTGACATTTTGTAAACA
129 TTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
1692 AGTTTTGGTCTTTGAGTTAAAAA
194 AGTTTTGATCTTTGAATTAAAAA
1715 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
1762 TACGAGTTCT
Statistics
Matches: 1285, Mismatches: 233, Indels: 62
0.81 0.15 0.04
Matches are distributed among these distances:
205 18 0.01
206 2 0.00
207 62 0.05
208 1 0.00
209 1 0.00
210 1 0.00
212 7 0.01
213 45 0.04
214 172 0.13
215 600 0.47
216 147 0.11
217 77 0.06
218 151 0.12
219 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGATCTTTGAATTAAAAA
Found at i:827 original size:430 final size:431
Alignment explanation
Indices: 2--16255 Score: 14160
Period size: 430 Copynumber: 38.3 Consensus size: 431
1 T
* * *
2 CTTATTTACGTGAGAATTG-TT-TCTCTTGGCTCTTGGACGAACTTTCGAACTTTTCAAACTCTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
** *
65 ACGAGTTCTTTTATAACTTCGGTTTTTTAGAGTATTC-A-A-G----A--CCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
121 TTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAAA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * *
186 TTTTGATCTTTGAATTAAATACTTATTTACGTGACAATTGTTTCTCTTTTAGTTCTTGGATGAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC
* * * ** * * * *
251 TTCCGAACTTGTCAAAATTTTACGAGTTCTTTTATAATTTTTGTTCCATAAGGTGTTCTAGACGA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* *
316 TCCATTCCTTTGAGCAA-TTTCTCGAACTTTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
325 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * *
380 AGTTT-TGCATTTTGT-AA-AAGGTTTGGTTGTTTGTATTAAAAA
389 AGTTTGT-CATTTTGTAAACAAGTTTTGG-TCTTTGAATTAAAAA
* *
422 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGTACGAACTTTCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
487 ATGAGTTCTTTCATAACATCAGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGTAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
552 TTGAACATTCTATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAAAAAA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAA
* * * * *
617 GTTTTGTTGTTTGAATTATAAACTTATTTAGGTGAGAATTGTT-TGTCTTGGTTCTTGGACGAAC
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
681 TTTCGAACTTTTCAAACTTTTACGAGTACTTTTATAACTTCGATTCCATAAAGTATTCAGGACGA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * * *
746 TCCTTTAATTCGAGCAATTTTCTGAACATTCCATGCTCTGGAAATCGTATCATTTGGTCTAAATT
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
** * *
811 GTTTGTCACATTGTAAACAAGTTTTGCTCTTTGGATTAAAAA
390 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * *
853 CTTATTT-CGTGAGAATTGTTACTCTCTCGGTTCTAGGACGAACGTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
*
917 ACGAGTTCTTTTATAACTTCGGTTACTTAAAGTATTCAAGACGATCCATTCCATT-GAGCAA-TT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTT
* * * * * * *
980 TTTGAACATTCCCTTCTCCGAAAATCGCATCATTTAGTCTAAATAGTTTTTCATATTGTAAACAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC--
* *** * ** * * *
1045 AAGTTTTGGTCTTTAAAACGAAATCTTATTTACGTGAGAATTGTT-TCTCTCAGCTCTTAGATGA
193 AAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGA
* * *
1109 ACTTTCGAACTTTTCAAACTCTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCAAGAC
258 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* *
1173 GATCCATTCCTTCGAGCAATTTT-TCGAACATTCCTTGCTCGGGAAATCGCATCATTTGCTCTAA
323 GATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * * *
1237 ATAGTTTGTCATTTTGTAAACAACTTTTGATCTTAGAATTTAACA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * *
1282 CTTATTTACGTGAGGATT-TTTCTCCCTTGTTTCTTGGACGAACTTTCGAAATTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
1346 ACGACTTCTTTT-TCAACTTCGATTCCTTAAAGTGTTCAAGACAATCCACTCATTCGAGCAATTT
66 ACGAGTTCTTTTAT-AACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* ** ** * * * * *
1410 TTCGAACATTCCATTTTCGAAAAATCGTAGCATTAGGTATAAATATTTTGTCATTTTGTAAACAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* ** * * * *
1475 CTTTTCATGTTTGAATTAAAAGAAGTT-TTCTACATGGGAATTGTTTCTCTCTTGGTTCTTGGAC
195 GTTTTGGTCTTTGAATT-AAA-AACTTATT-TACGTGAGAATTG-TTCTCTCTTGGTTCTTGGAC
* * * *
1539 AAAC-TTCTGAACTCGTCAAAATTTTACGAGTTCTTTTATAACTTCGGTTGCTTAAAGTATTCAA
256 GAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
* * * * * * *
1603 GGCGATCCATTTCTTCAAGCAATTTT-TCGATCATTCCATGCTCGGGAAATTGCATCATTCGATC
320 GACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * *
1667 TAAATTGTTTGACATTTTGTAAACAAGTTTTGGTCTTTGAGTTAAAAA
384 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
1715 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT----G-------G-AC--G---AACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
1763 ACGAGTTCTGTCATAACTTTGGTTCCTTAAAGCATTC-AGAACGATCCATTCATTCGAGCAATTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG-ACGATCCATTCCTTCGAGCAATTT
*** * * * *
1827 TCCAAACATTCCATGCTTGGGATATTGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
1892 CTTTTGGTCTTTGAATTAAAATCTTATTTACTTGAGCAA-TGTTTATCTCTTGGTTCTTGGACGA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAG-AATTG-TTCTCTCTTGGTTCTTGGACGA
* * * *
1956 ACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGGTTCCTTAACGTATTCAAGAT
258 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
** * ** * * * *
2021 GATCCGCTCCTTCGAGCAA-TTTCTCGAAAATTCCATGCTCGAAAAATCACGTTATTTGGACTAA
323 GATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * * * * **
2085 ATAGTATGTAATTTTATAAAAAAAAATTTTGTTGC-TTGAATTAAAGG
387 ATAGTTTGTCATTTTGT--AAACAAGTTTTGGT-CTTTGAATTAAAAA
* **
2132 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAACAATT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * * *
2197 ACTAG-T-TTTCATAACTTCGGTTCGTTAAAGTATTAAAGACGACCCATTCATTTGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * **
2260 TTGTAGATTCCATTCTCGGGAAATAGTAGCATTTGGTCTAAATAGTTCT-TC-TTTTCGGGAACA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTT-GTAAACA
* * *
2323 AGTTTTTGTCTTTGAA-TAAACAACTTATTTATGTGAAAATTGTT-TCTCTTGGTTCTTGGACGA
194 AGTTTTGGTCTTTGAATTAAA-AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGA
* * * * *
2386 ACTTTCGAACTCGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTACATTATTCTAGAC
258 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * * ** *
2451 GATCCATTCCTTGGAGCAATTTTCTAAACATTACAAGCTCGGG----GGCATCATTTAATATAAA
323 GATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * * *
2512 TAGTGTG-CATTTTGTAAAAAACTTTTGGTCTTTGGATTAAACA
388 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * *
2555 C-TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAATTTTCGAACTTGTCAAACTTTC
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* *** * * *
2619 ATGAGTTCTTTTATAACTTTAATTTCTTAGAGTATTCAAGACGATCCATTCCTAT-GAGCAA-AT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTT
* * * * * * *
2682 TTTCAATCATTCCATGCTCCGGATATCGCATCATTCGGTCAAAATTGTTTGACATTTTGTAAACA
130 TTTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
2747 AGTTTTGTTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGACG-
194 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGA
* * * * *
2811 A-----G-----G------TTTTATGAGTTATTTCATAA-TTTGGTTCCTTAAAGTATT-AATGT
258 ACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GA
* * * * * * *
2858 TGATCCATTCGTTTGAGCAATTTTCCGAACATTCCAAGCTCGTTGG--ATCGCGTCATTTGGCCT
322 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG--GGAAATCGCATCATTTGGTCT
* * *
2921 AAGTAGTTT-TCATTTTGTAAACAACTTTTGGTCTTTGAGTTAAAAA
385 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * ** *
2967 CTTATTTATGTGAGAATTATTTGTCTTTTGGTTCTTGGATAAACTTTGGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * ** *
3032 ACGAGTTCTTTTATAACTTTGGTTCCATAAAGTATTCAAGACGATGCACACCTTCTAGC-ATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* ** * ** * *
3096 TTCGAACAGTCCGGGCTCAGGAAATCGTGTCATTTGGTCTAAATAGTTTGTAATTTCGTAAA-AT
131 TT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-
* ** * * *
3160 AGTTTTGTTGATTGAATTAAAAACTTATTTATGAGAGAATTGTT-TCTCTATCTGTTCTTGGACG
194 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCT-T-GGTTCTTGGACG
* * * * ** *
3224 AACTTTCGAACTTGTCAAAATTTTACGAGTTCTTTCACAAGTTTAGTTCCTTAAAGTATTCAAAA
257 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * * * * *
3289 CTACCCACTCCTTCGAGCAATTTTCTGAACATTCCATTCTCGGGAAATAGCAACATTTGATCAAA
322 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
3354 ATAGTTCT-TCATGTTG-GAACAAGTTTTGGTCTTTGAATCAAAAA
387 ATAGTT-TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
*
3398 CTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* ** * * *
3461 ATGAGTTCTTCCATAACTTCGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCTAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
3526 CTAAACATTACATGCTCGGGAAATGGCATCATTTGGTATAAATAGTGTGTCATTTTGTAAATAAT
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * * *
3591 TTTTGGTCTTTGGATTAAACACTTA-TTACATGAGAATCGTTTCTCTTTTGGTTCTTTGACGACC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC
* * ** * *
3655 TTTCGAACTTTTCAAAC-TCTACGAGTTCTTTTATAACTTTAGTTTCTTAGAGTATTCAAGACG-
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* *
3718 --------TTCGAGCAA-TTTCTTGAACATTCCATGCTCGAGAAATCGCATCACTTGGTCTAAAT
325 TCCATTCCTTCGAGCAATTTTC-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * **
3774 AGCTTT-TCGTTTTGTAAACAACTTTTGGTATTTGAATTAATTA
389 AG-TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * *
3817 CTTCTTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGGATGAACTTCCGAACTTGTTAAAATTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* ** * * * *
3882 ACGAGTTCTTTTATAATTTTTGTTCCATAAAGTATTCTAGTCGATCCATTCCTTTGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
3947 TCGAACTTTCCATGCTCGGGAAATCGCGTCATTTGGTCTAAATAGTATGT-ATTTTATAAA-AAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
4010 GTTTGGTTGTTTGAATTAAAAACTTATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
196 TTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * *
4075 CTTTCAAACTTGTCAAACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
** * * * * * *
4140 ATTTATTTCTTCGAGTAATTTT-TCGAACATTCTATGCTCGAGATATCTCATCATTTGGTCTAAA
324 ATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* ** *
4204 TAGTTTGTCATTTTGTAAAAAAAAGTTTTTTTGTTTGAATTAAAAA
388 TAGTTTGTCATTTTGT--AAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * *
4250 CTTATTTAGGTGAGAATTG-TT-TGTCTTGGTTCTTGGACGAACTTCCGAACTTTTCCAACTTCT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * **
4313 ACGAGTTCTTTTATAACTTCGATTCCATAAAGTATTCAGGACGATCCTTTAATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
4378 CTAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTTTCACTTTGTAAACAAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
4443 TTTTGGTCTTTGCATTAAAAACTTA-TT-CTGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAA
196 TTTTGGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * *
4506 -TTTCCAAATTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGAC
259 CTTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAC
* * * * *
4570 GATCCATTCCATT-GAGCAATTTT-TGAACATTCCCTTCTCTGAAAATCGCATCATTTAGTCTAA
323 GATCCATTCC-TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *** *
4633 ATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAAAACGAAAT
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * *
4678 CTTATTTACGTGAAAATTG-TT-TCTCTTGGCTCTTGGATGAACTTCCGAACTTTTCAAACTCTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * *
4741 GCGAGTTCTTTTATAACCTCGGTTTCTTAGAGTATTC-A-A-G----A--CCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
4797 TTGAACATTCCATGCTCGAGAAATCACAAGCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
131 TTGAACATTCCATGCTCGGGAAATCGC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
4862 CTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCTCTTTTGGTTCTTGGATGAA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAA
* * * * ** * *
4927 CTTTCGAACCTGTCAAAATTTTACGAGTTTTTTTATAATTTTTGTTCCATAAAGTATTCTAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
4992 ATCCATTCCTTTGAGCAATTTT-TCGAAC-TTGCCATGCTCGGGAAATCGCTTCATTTGGTCTAA
324 ATCCATTCCTTCGAGCAATTTTCT-GAACATT-CCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * *
5055 ATAGTATG-CATTTTGTAAA-AAGGTTTGGTTGTTTAAATTAAAAA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGG-TCTTTGAATTAAAAA
*
5099 CTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
5164 ACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGATGATTCATTCCTTCAAGTAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * *
5229 TCGAACATTCTATGCTCGGGATATCGCATCGTTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAA
* * * ** *
5294 GTTTTGTTGTTTGAATTCAAAACTTATTTACGTGAGAATAATT-TGTCTTGGTTCTTGGACGAAC
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
5358 TTCCGAACTTTTCCAACTTTTACGAGTTCTTTTATAACTTCGATTCCATAGAGTATTCTAGACAA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * * * * * * * * *
5423 TCCTTTAATTCAAGCAATTTACTAAACATTCCATGCTCAGGAAATTGTATCATTCGATCTAAATT
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
5488 GTTTGTCACTTTGTAAACAAGTTTTGGTCTTTGCATTAAAAA
390 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * *
5530 CTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * *
5594 ACGAG-TCTGTTATAACTTCGTTTCCTTAAAATATTCAAGACGATCCATTCCATT-GAGCAA-TT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTT
* ** *
5656 TTTGAACATTCTATGGAC--GAAATCGTATCATTTGGTCTAAATAGTTTG-CATTTTGT-AA-AA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * **
5716 GGTTTGGTTGTTTGAATTAAAAACTTATTTACGTGAAAATTG--CAACAT-TTGG-T-AT-AAAT
195 GTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTC-TC-TCTTGGTTCTTGGACG
** ** * * * **** ** * *
5775 AGTTTGTC-ATTTTGTAAGCAACTTTT-CGTGTT-TGAATTA-AA-AGAAGTTTTTTACATGGGA
257 AACTT-TCGAACTTGTCA--AACTTTTACGAGTTCT--TTTATAACTTCGGTTCCTTA-A--AGT
**** * * * * * * ** * *** *
5835 ATT---GTTTCTCTCTTGGTTCTTGGA-CGAA-CTTCTGAACTTGTCAAAATTTTACGAGTTCTT
314 ATTCAAGACGATC-CAT--TCCTTCGAGC-AATTTTCTGAACAT-TC--CATGCT-CGGGAAATC
** * * * * * ** * * *
5895 TTATAACTTCGATTCCTTAAAGTA-TTCGAGACGATCCATTCCTCCAAGCAATTTTTTGATCATT
371 GCATCA-TTTG-GT-C-TAAA-TAGTT-----TG-T-CATT-TTGTAAACAA-GTTTTGGTC-TT
* * *
5959 CCATG-CTTGGGAAAT
421 ---TGAATT--AAAAA
* * * * **
5974 CGTATCATTT--GTCTA-AATTGTTTGACATTTTGTAAACAAGTTTTGTTCTTTGAAATAAAAAC
1 C-T-T-ATTTACGT-GAGAATTGTTT--C----TCT---C----TTGGTTC-TTG---GACGAAC
** * * * * ** * *
6036 TTAT-TTAC--GTGAGAATTGTTTCTCTCATGGTTCTTGGACGAACTTTTACGAGTTCTTTCATA
45 TT-TCGAACTTGTCA-AACT-TTT-AC-GA--GTTCTTTTA-TAAC--TT-CG-GTTCCTT-A-A
* * *** * * * * * *
6098 ACTTCGGTTCCTTAA-A-G-T--ATTCAAGACGATCCATTCATTCGAGCAATTTTCCAAACATTC
96 A-GT--ATT-C--AAGACGATCCATTC-CTTCGAGCAATT-TTTTGAAC-A--TT-C---CATG-
* * * * *
6158 CTTGCTCGAGATATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAGAACTTTTGGTCTT
145 ----CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTT
* * * *
6223 TGAATTAAAATCTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTT
206 TGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
* * * * * * *
6288 GTCAAACTTTTACAAGTTCTTTTATAACTTTGGTTCCATAACGTATTCAAGATGCTCCACTCCTT
270 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * *
6353 CGAGCAATTTT-TCGAACATTCCATGCTCAGAAAATCGCGTTATTTGGTCTAAATAGTTTGTAAT
335 CGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCAT
* ** *
6417 TTTGTAAAAAAAAATTTGTTGC-TTGAATTAAAAA
399 TTTGT-AAACAAGTTTTGGT-CTTTGAATTAAAAA
*
6451 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTATT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * ** *
6516 ACTAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTACTTTAAGTAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * ** * * **
6581 CTAAACATTTCATTCTCGAGAAATAACAGCATTTGGTCTAAATAGTTCT-T-TTTTTGGGAACAA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAA
* * ** * *
6644 GTTATT-GTCTTTGAATCAACAACTTATTTGTGTGAGAATTGTT-TCTCTTAGTTCTTAGACGAA
195 GTT-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAA
* * * * *
6707 CGTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCTAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * ** *
6772 ATCCATTCCTTGGAGCAATTTTCTAAACATTACATGCTCAGGAAATGGCATCATTTAATATAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * *
6837 AGTGTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAACA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * ** * ** * *
6880 C-TGTTTACGTGAGAATTGTTTCTGTCTTTTTTCTTTGATAAATTTTCGAACTTGTCAAACTTTC
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * *
6944 ATGAGTTCTTTTATAACTTTGGTTTCTTAGAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
** * * * * * ** *
7008 TCCAATCATTCCATGCTCAGGATATCGTATCATTCGGTCTAAATTGTTTAACATTTTGTAAACAG
131 TTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
** *
7073 GTTTTATTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGAC-AA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAA
* * *
7137 -----G-----G------TTTTACGAGTTCTTTCATAA-TTCGGTTCCTTAAAGTATTAAAGATG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * *
7185 ATCTC-TTCGTTCGAGCAATTTTCTGAACATTTCAAT-CTCGTGAGATCTCGTCATTTGGTCTAA
324 ATC-CATTCCTTCGAGCAATTTTCTGAACA-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * * * *
7248 GTAGTTTTTCATTTTGTAAATAACTTTTGGTCTTTGAGTTAAAAA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
7293 CTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
7358 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCTTCTAACATTTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
** * * * * **
7423 TTGAACATTCCATGCTTAGTAAATCACGTCATTTGGTCTAAATAGTTTGTAATTTTGTAAAGTAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* ** * ** *
7488 TTTTGTTAATTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTTATTCTTAGACGAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
7553 TTTTGAACTTGTCAAACTTTTACGAGTTCTTTCACAAGTTTGGTTCCTTAAAGTATTCTAGACTA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * * * * *
7618 CCCATTCCTTCGAGCAATTTTCTAAACATTCCATTCTTGGGAAATAGCAGCATTTGATCAAAATA
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* *
7683 GTTCT-TCATTTTG-GAACAAGTTTTGGTCTTTGAATCAAAAA
390 GTT-TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * *
7724 CTTATTTACGTGAGAA-TGTTT-TCTCTTTGTTCTTGGACAAACTTTCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * *
7787 ACGAGTTCTTCTATAACTTTGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * *
7852 CTAAACATTACATGCTCGGGAAA-CGGCATCATTTGGTATAAATAGTGTGTCATTTTGTAAATAA
131 TTGAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
7916 CTTTTGGTCTTTG--GT---CACTTA-TTACGTGAGAATCGTTTCTCTTTTGGTTCTTTGATGAA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * * * *
7975 CTTTCGAACTTTTCAAAC-TCTACGAGTTCTTTTATAACTTCAGTTTCTTAGAGTATTC-A-A-G
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* *
8036 A-CC--T--TT-GAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* **
8095 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATG
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * *
8138 CTTATTTACGTGAGAATTGCTTCTCTTTTGGTTCTTGGATGAACTTCCCAACTTATCAAAATTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* ** * * * * *
8203 ACGAGTTCTTTTATAATTTTTGTTCCATAAGGTGTTCTAGACGATCCATTCCTTTGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * *
8268 TCGAACTTTCCATGCTCGGGTAATCGCATCATTTGGTCTAAATAGTTTG-CATTTTGTAAA-AAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * *
8331 GTTTGGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
196 TTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * *
8396 CTTTTGAACTTGTCAAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAGAGTATTCAAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * * * * *
8461 ATTCATTCCTTCGAGTAATTTTCTAAACATTCTATGCTCGGGATATCACATCGTTTCGTCTAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * ** *
8526 ATTTTTTCATTTTGTAAAAAAAGTTTTATTGTTTGAATTAAAAA
389 AGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
8570 CTTATTTACGTGAGAATTG-TT-TGTCTTGGTTCTTGAACGAACTTCCGAACTTTTCCAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * **
8633 ACGAGTTCTTTTATAACTTCGATTCCATAAAGTATTCAGGACGATCCTTTAATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * * *
8698 CTAAACATTCCATTCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCACTTTGCAAGCAAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
8763 TCTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC
* * *
8827 TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * ** * * * *
8892 TCCATTCCATT-GAGCAATTTT-TTAACATTCCATTCTTTGGAAATCACATCACTTAGTCTGAAT
325 TCCATTCC-TTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * * ***
8955 AGTTTTTCATTTTGTAAATAAGTTTTGCTCTTTAAAACGAAAA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * *
8998 CTTATTTACGTGAGAATTG--TGTCTCTTGGCTCTTGGATGAAC-TTCTGAACTTTTCAAACTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTT
* * * * * *
9060 TACAAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAGGACGATTCATTCCTTCGAGCAATTT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTT
* * * * *
9124 TTCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTAAATTGTTTGTCATTTTGTAAACAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
9189 CTTTTGGTCTTTGAATTAAACACTTACTTACATGAGGATTGTTCTCCCTTGGTTTTTGGACGAAC
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
9254 TTCCAAACTAGTCAAAGTTTTACGAGTTCTTTTACACCTTCGGTTCCTTAAAGTATTCAAGACAA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * ** ** * *
9319 TCCACTCATTCGAGCAATTTT-TCGAACATTCCATTTTCGAAAAATCGCAACATTTGGTATAAAT
325 TCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
9383 AGTTTGTCATTTTGTAAACAACTTCTCGTGTTTGAATTAAAAGAA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAA-AA
* * * * * * *
9428 GTTTTTTTACATGGGAATTGTTTCTCTCTTGGTTCTTGGACAAAC-TTCTTAACTTGTCAAAATT
1 -CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTT
* *
9492 TTACGAATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-T
64 TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * * * *
9556 TTTTCAATCATTCCATGCTTGGGAAATCGCATAATTCGGTATAAATTA-TTTGACATTTTGTAAA
129 TTTTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAA
*
9620 CAAGTTTTGTTCTTTGGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT---
192 CAAGTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGA
*
9681 -GAA----CGAA----T-----TTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAA
255 CGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAA
** * * * * *
9732 GACGATCCATTTATTCGAGCAATTTTAC-AAACATTCCATGCTTGAGATATCTCATCATTTGGTC
320 GACGATCCATTCCTTCGAGCAATTTT-CTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTC
* * * *
9796 TAAATAGTTTTTC-TTTTGGTAAACAACTTTTGGACTTTGAATTAAAAT
384 TAAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTGAATTAAAAA
*
9844 CTTATTTACGTGAGAATTG-TT-TGTCTTGGTTCTTGGACGAA-TTTCCGAACTTG---AAC---
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAAACTTT
* ** *
9900 -A--A---C-TTT-T-A---CGAGTTCCGTAAAGTATTCAAGACGATCCATTAATTTGAGCAATT
65 TACGAGTTCTTTTATAACTTCG-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT
* * * *
9953 TTCTAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACA
129 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * * * *
10018 ACTTTCT-GTGTTTGAATTAAAAGATGTTTTTTACATGGGAATTATTTCTCTCTTGGTTCTTAGA
194 AGTTT-TGGTCTTTGAATTAAAA-A-CTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGA
* *
10082 CGAAC-TTCTGAACTTGTCAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
255 CGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA
* * * * *
10146 AGACAATCCATTCCTTCGAGCAATTTT-TCGATCATTCCATGCTCCGGAAATCGTATCATTCGGT
319 AGACGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGT
* * * * *
10210 CTAAATTGTTTGACATTTTGTAAATAAGTTTTGTTCTTTGAAATAAAAA
383 CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
*
10259 CTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTT-G--G-------G--C--G---AACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * **
10307 ATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATTCGTTTATT-GAAGCAATTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTT
*** * * *
10371 TCCAAACATTCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTTTCATTTGGTAAACAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
10436 CTTTTGGACTTTGAATTAAAATA-TTTTTTACGTGAGAATTGTT-TGTCTTGGTTCTTGGACGAA
195 GTTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
10499 CTTCCGAACTTGTCCAACTTTTACTAGTTCTTTTATAACTTCGATTCCCTAAAGTATTCAAGGCG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
** * * *
10564 ATCCATTAATTCGAGCAATTTTCTAAACGTTCCATGCTCGGGAAATCGTATCATTTGGTCTAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* *
10629 TGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGCATTAAAAA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
10672 CTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* *
10736 ACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GAGCAA-TT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTT
* * * * * * * *
10799 TTTGAACATTTCATTCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGTAAATAA
130 TTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *** * * *
10864 GTTTTGCTCTTTAAAACGAAAACTTATTTACGTGAGAATTG-TGTCTCTTGGCTCTTGGATGAAC
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
10928 -TTCTGAACTTTTCAAACTATTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAAGACG
260 TTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * *
10991 ATTCATTCCTTCGAGCAATTTT-TCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTAAA
324 ATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * *
11055 TTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAACA
388 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * * *
11099 CTTACTTACATGAGGATTG-TTCTCCCTTGGTTTTTGGACGAACTTCCGAACTAGTCAAAGTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
11163 ACGAGTTCTTTTACAACTTCAGTTGCTTAAAGTATTCAAGACAATCCACTCATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * ** *** * * * * *
11228 TCGAGCATTCCATTTTCAAAAAATCACAACATTTGGTATAAATAGTTTGTCATTTCGTAAACAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * * * **
11293 TTTTTGTGTTTGAATTAAAAGAAGTTTTTTACATGGGGATTGTTTCTCTCTTGGTAATTGGACGA
196 TTTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGA
* *
11358 AC-TTCTGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
258 ACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * * * **
11422 CGATCTATTCCTTCGAGCAATTTTTTGATCATTCCATGCTCGAGAAATCGCATCATTCCGTCTAA
322 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *** * * *
11487 ATTGTATAAAATTTTGTAAACATGTTTTGTTCTTTGAAATAAAAA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
11532 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT----G-------G-AC--G---AACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* *
11580 ACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*** * * * * * *
11645 CCAAACGTTCCATGCTCGAGATATCGCATTATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
11710 TTTTGGTCTTTGAATTAAAATCTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTGGACAAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * * * *
11775 TTCCTAACTTGTCCAACTTTTACTAGTTCTTTTACAATTTCGATTCCATACAGTATTCAAGTCGA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* ** * * * * *
11840 TACATTATTTCGACCAATTTTCTAAACGTTTCATGCTCGGGAAATCGTATCATTTGGTCTAAAT-
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * *
11904 TTTTTTCATTTTGTAAACAAGTTTTGGTCTTTGCATTAAAAA
390 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * *
11946 CTTA-TTCCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
*
12010 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GAGCAA-TT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTT
* * * * * *
12073 TTTGAACATTCCAAT-CTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGTAAATA
130 TTTGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * * * *
12137 AGTTTTGCTCTTTAAAATGAAAACTTATTTAGGTGAGAATTGTT-TCTCTTGGCTCTTGGATGAA
194 AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAA
* * * * *
12201 CTTTTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * *
12265 ATTCATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCGGCAAATCGCATCATTTGCTCTAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * **
12330 TGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAGCA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * * * * **
12373 CTTACTTACGCGAGGATTG-TTCTCCCTTGGTTCTTGGATGAACTTCCTAACTAGTCAATGTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * *
12437 ACGAGTTCTTTTACAACTTCGGTTCCTTGAAGTATTCAAGACAATCCACTCCTTCGAGAAAGTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* ** * * * *
12502 TCGAACATTCCATTTTCGGGAAATCGCAACATTTGGTATAAATAGTTTGTTA-TTTGTAAACAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * *
12566 TTTTTGTGTTTGAATT-AAAAGTTCTTT---T-A-AA--------AC-T--TT-TT----GAACT
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACT
* * *
12609 TT-----TTGTCAAAATTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAGGAT
261 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * **
12669 CCATTCCTTCGAGCAATTTT-TCGATCATTTCATGCCCGAAAAATCGCATCATTCT-GTCTAAAT
326 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATT-TGGTCTAAAT
* * * * * *
12732 TGTTTGACATTTT-TCAAACAAGATTTGTTCTTTAAAATAAAAA
389 AGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAA
* *
12775 CTTATTTACGTGAGAATTGTTTCTCTCTCGGTCCTTGGAC--A------AA----T-----TTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * *
12823 ACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCTATTCATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
*** * * * * * *
12888 ACAAACATTCCATGCTCAGGATATCGCATCATTTGG-CTAAATAGTTTTTCACTTTCTAAACAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
12952 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTACTCTCTTGGTTCTTGGACGAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAAC
* * ** * * **
13017 TTTCGAACTTGTTAAACTATTGTGAGTTCTTTCATAACTTCGGTT-CTTAAAGTATTAAAGATAA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * * * * *
13081 TCCATTCCTTCGTGCAGTTTTCTGAACTTTCCATTCTTGGGAAATAGCAGCATTTGGTCAAAATA
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
** * *
13146 GTTCT-T--TTTTGGGAACAAGTTTTGGTCTTTGAATCAACAA
390 GTT-TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * *
13186 CTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * * *
13249 ATGAGTGCTTTTATAACTTCGGTTCCTTACATTATTCTAGTCGATCCATTCCTTGGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
13314 CTAAACATTACATGCTCGGG---TGGCATCATTTAGTATAAATAGTGTGTCATTTTGTAAA-AAT
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-
* * * * * * *
13375 CTTTTTGTCTTTGGATTAAACAC-TAATTACGTGAGAATTGCTTCTCTCTTGGTTCTTTGAAGAA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * * * * * * *
13439 TTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTTCTTAGAGTATTAAAGATG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * *
13504 ATCCATTCCTTCGAGCAATTTTC-CAATCATTCCATGCTCGGGAAATAGTATCATTTGGTCAAAA
324 ATCCATTCCTTCGAGCAATTTTCTGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA
* * * *
13568 TTGTTTGACATTTTGTAAACAAGTTTTGTTCTTTGAAATAAAAA
388 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
13612 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G--G-A----CGAA---G------TTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
13660 ATGAGTTCTTTCATAATTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCGTTCGAGCTATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * ** * * * * *
13725 TTGAACATTCCAAGTTCGTGATATCGTGTCATTTGGTCTAAATTGTTTTTCATTTTATAAAAAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
13790 TTTTGGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTACTCTCTCGGTTCTTGGACGAAC
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAAC
* * *
13855 TTCCGAACTTGTCAATCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAACGTATTCAAGACGA
260 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * * * *
13920 TCCACTCCTTCGAGCAATTTTTTGAACATTTCATACTCGGGAAATCACATCATTTGTTCTAAATA
325 TCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * * *
13985 GTTTGTTATTTTGTATACAAATTTTTGTGTTTGAATTAAAAGAA
390 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAA-AA
* ** * * ** *
14029 CTTATTTACCTGAGAATTGTTTCTCTCGTT-GTTCTT-GTTGAACTTTTGAAATACTCAAAATTT
1 CTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTT
* *
14092 TACGAGTTCTTTTATAACTTCGATTCCTTAAAATATTCAAGACGATCCACTT-CTTCGAGCAATT
65 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATT
* * * *
14156 TTTCGAACATTCGATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAAA-A
129 TTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * *
14220 TAGTTTTGTTGTTTAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACG
194 -AGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACG
* * * *
14285 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAAGTTCGATTCCTTAAATTATTCAAGA
257 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
* * ** * *
14350 CTATTCACACCTTCGAGCAATTTTCTGTACGTTCCAT--TC------T--CA--A----G---AA
322 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
** ** *
14396 ATAG-CAG-C-TTTTGGGAACAAGTTTTGGTCTTTGAATCAAAAA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* *
14438 CTTATTTATGTGATAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * ** *
14501 ACGAGTTCTTTTATTATTTCAGTTCAATAAAGTTTTCAAGACGATCCATTCCTTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * *
14566 TCGAACATTCCATGCTCGGGAAATCGTATCATTTAGTCTAAATAGTTTGTAATTTTGTAAA-AAG
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-
* * * * * * *
14630 GTTTTGTTGTTTCAATTAAAAAATTATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGATGAA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
14695 CTTTTGAACTTGCCAAACATTTACGAGTTCTTTCATAACTTCAGTTTCTTAAAGTATTCAAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * * * *
14760 ATCCATTCCTTCGAGCAATTTTTTGAACATTCCACT-TTTGGGAAATAGCAGCATTTGGTCTAAA
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAA
* *
14824 TAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAA
388 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * * * *
14868 CTTTTTTAAGTGAGAATTG-TT-TCTCTTGGTTCTTGGACAAACTTCCGAACTCGTCTAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
14931 TCGAGTTCTTTTATAACTTCGATTCCTTAATGTATTCAAGATGATCCATTCATTCGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * ** *
14996 CTAAACATTTCATGCTTGGGAAATCATATCATTTAGTCTAAATTA-TTTGTCATTTTGTAAACAA
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAA
15060 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
195 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAA
* * *
15125 CTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCTAGACG
259 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG
* * *
15190 ATCCATTCCTTTGAGCAATTTT-TGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAAT
324 ATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* * * *
15254 AGTTTTTCATTTTTTAGACAAGTTTTGGTCTTTAAAATT-AAAA
389 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAA
* * * *
15297 CTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGACGAACTTCCGAACTTTTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * *
15360 ACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCCAGGCAATCCATTCCTTCAAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
15424 TCGAACATTTCATACTCGGGAAATAGCATCATTTGGTATAAATAGTGTGTCATTTTGTAAACAAC
131 TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*** * * *
15489 TTTTGGTCTTTGAATTAAATTTTTATTTACCTGAGGATTGTTCTCCCTTGGTTCTTGGACGAACT
196 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACT
* * * *
15554 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGACAAT
261 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * ** * *
15619 CCACTCCTTCGAGCAATTTT-TCGAGCATTACATTTTCGGGATATCGCATCATTTGGTATAAATA
326 CCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
* * * * * *
15683 GTTAGTAATTTTATAGACAAGTTTTTGTTTTTGAATTAAAAGAA
390 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAA-AA
* * *
15727 CTTTTTTACATGAGAATTGTTTCTCTCTTGGTTCTT-G--G-A---T-GAACTT-TCGAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * * * * * *
15783 ACGAGTTATTTTATAACTTTGGTTCCTTAACGTATTCATGACAATCCACTCATTCGAGCAA-TTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
* * * * * * *
15847 TTCAGACATTCCATG-TGGGGAAATCACATCATTTGG-ATAAATTGTTTGTTATTTTGTAAATAA
131 TTGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * *
15910 ATGTTT-GTATTTGAATTAAAAGAACTTATTTAAGTGAGAATTATT-T-TC--AGTTCTT-----
195 GT-TTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACG
* * * * * * *
15965 ---TTT-TAATTTGTCAAAATTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGA
257 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
** * * *
16026 CGATCCATTCCTTCGAGCAATTTTCAAAACATTCTATGCTCGAGAAATCGTATCATTTGGTCTAA
322 CGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA
* * *
16091 A-AGTTTG------TG--AA-AGGTTTTGTTGTTTGAATTAAAAA
387 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
* * * *
16126 CTTTTTTACGTGAGAATTATTTTTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTT
1 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
* * ** *
16191 ATGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGAAGCATTCCTTTGAGCAATTTT
66 ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
16256 ACGTGAGAAT
Statistics
Matches: 12778, Mismatches: 2415, Indels: 1293
0.78 0.15 0.08
Matches are distributed among these distances:
385 12 0.00
386 113 0.01
387 8 0.00
390 1 0.00
391 2 0.00
392 2 0.00
395 7 0.00
396 98 0.01
397 8 0.00
398 31 0.00
399 36 0.00
400 7 0.00
401 49 0.00
402 127 0.01
403 22 0.00
404 4 0.00
405 4 0.00
406 14 0.00
407 22 0.00
408 391 0.03
409 60 0.00
410 18 0.00
411 246 0.02
412 86 0.01
413 652 0.05
414 415 0.03
415 658 0.05
416 161 0.01
417 483 0.04
418 186 0.01
419 87 0.01
420 149 0.01
421 389 0.03
422 342 0.03
423 345 0.03
424 306 0.02
425 38 0.00
426 280 0.02
427 795 0.06
428 940 0.07
429 1014 0.08
430 1594 0.12
431 778 0.06
432 564 0.04
433 645 0.05
434 158 0.01
435 19 0.00
436 1 0.00
437 3 0.00
438 10 0.00
439 7 0.00
440 2 0.00
442 6 0.00
443 3 0.00
444 6 0.00
445 7 0.00
446 15 0.00
447 6 0.00
448 5 0.00
449 1 0.00
450 6 0.00
451 2 0.00
452 4 0.00
454 3 0.00
455 8 0.00
457 1 0.00
458 2 0.00
459 15 0.00
460 6 0.00
461 6 0.00
462 6 0.00
463 17 0.00
464 1 0.00
465 1 0.00
467 2 0.00
468 4 0.00
469 3 0.00
470 2 0.00
471 2 0.00
472 2 0.00
473 5 0.00
474 6 0.00
475 4 0.00
476 16 0.00
477 8 0.00
478 6 0.00
479 9 0.00
480 2 0.00
481 3 0.00
482 8 0.00
483 9 0.00
484 1 0.00
485 1 0.00
486 2 0.00
489 2 0.00
490 6 0.00
491 2 0.00
492 1 0.00
493 30 0.00
494 12 0.00
495 35 0.00
496 8 0.00
497 20 0.00
498 20 0.00
499 10 0.00
500 21 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (431 bp):
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTT
ACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT
TTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACT
TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAA
Found at i:4066 original size:215 final size:216
Alignment explanation
Indices: 2814--9687 Score: 5673
Period size: 215 Copynumber: 31.9 Consensus size: 216
2804 TTGGACGAGG
* * * ** * *
2814 TTTTATGAGTTATTTCATAA-TTTGGTTCCTTAAAGTATT-AATGTTGATCCATTCGTTTGAGCA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA-GACGATCCATTCCTTCGAGCA
* * * * *
2877 ATTTTCCGAACATTCCAAGCTCGTTGG--ATCGCGTCATTTGGCCTAAGTAGTTT-TCATTTTGT
65 ATTTTTCGAACATTCCATGCTCG--GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
2939 AAACAACTTTTGGTCTTTGAGTTAAAAACTTATTTATGTGAGAATTATTTGTCTTTTGGTTCTTG
128 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
** **
3004 GATAAACTTTGGAACTTGTCAAAC
193 GACGAACTTCCGAACTTGTCAAAC
* * ** * *
3028 TTTTACGAGTTCTTTTATAACTTTGGTTCCATAAAGTATTCAAGACGATGCACACCTTCTAGCAT
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* ** * ** * *
3093 TTTTTCGAACAGTCCGGGCTCAGGAAATCGTGTCATTTGGTCTAAATAGTTTGTAATTTCGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * ** * * *
3158 -ATAGTTTTGTTGATTGAATTAAAAACTTATTTATGAGAGAATTGTTTCTCTATCT-GTTCTTGG
131 CA-ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGG
* *
3221 ACGAACTTTCGAACTTGTCAAAA
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * * * *
3244 TTTTACGAGTTCTTTCACAAGTTTAGTTCCTTAAAGTATTCAAAACTACCCACTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * *
3309 -TTTTCTGAACATTCCATTCTCGGGAAATAGCAACATTTGATCAAAATAGTTCT-TCATGTTG-G
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTA
* *
3371 AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
3434 ACGAACTTTCAAACTTGTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* ** * * * *
3457 TTTTATGAGTTCTTCCATAACTTCGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCTAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
3522 -TTTTCTAAACATTACATGCTCGGGAAATGGCATCATTTGGTATAAATAGTGTGTCATTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * * * *
3586 ATAATTTTTGGTCTTTGGATTAAACACTTA-TTACATGAGAATCGTTTCTCTTTTGGTTCTTTGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
3650 CGACCTTTCGAACTTTTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * *
3672 -TCTACGAGTTCTTTTATAACTTTAGTTTCTTAGAGTATTCAAGACG---------TTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
3727 TTTCTT-GAACATTCCATGCTCGAGAAATCGCATCACTTGGTCTAAATAGCTTT-TCGTTTTGTA
66 TTT-TTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGTA
* ** * *
3790 AACAACTTTTGGTATTTGAATTAATTACTTCTTTACGTGAGAATTGTTTCTCTTTTGGTTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
3855 ATGAACTTCCGAACTTGTTAAAA
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * *
3878 TTTTACGAGTTCTTTTATAATTTTTGTTCCATAAAGTATTCTAGTCGATCCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
3943 TTTTTCGAACTTTCCATGCTCGGGAAATCGCGTCATTTGGTCTAAATAGTATGT-ATTTTATAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * * *
4007 -AAGGTTTGGTTGTTTGAATTAAAAACTTATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGA
131 CAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
4071 CGAACTTTCAAACTTGTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * ** * *
4093 TTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATTTATTTCTTCGAGTAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
4158 TTTTTCGAACATTCTATGCTCGAGATATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT--A
* * ** * * *
4223 AAAAAGTTTTTTTGTTTGAATTAAAAACTTATTTAGGTGAGAATTG-TT-TGTCTTGGTTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
4286 ACGAACTTCCGAACTTTTCCAAC
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * * **
4309 TTCTACGAGTTCTTTTATAACTTCGATTCCATAAAGTATTCAGGACGATCCTTTAATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
4374 -TTTTCTAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTTTCACTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
4438 ACAAGTTTTGGTCTTTGCATTAAAAACTTA-TT-CTGTGAGAATTGTTTCTCTCTCGGTTCTTGG
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
4501 ACGAATTTCCAAATTTGTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* *
4524 TTTTACGAGTTCTTTTATAACTTCGTTTCCTTAAAGTATTCAAGACGATCCATTCCATT-GAGCA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * * * *
4588 ATTTTT-GAACATTCCCTTCTCTGAAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTGTAA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *** * * *
4652 ACAAGTTTTGGTCTTTAAAACGAAATCTTATTTACGTGAAAATTG-TT-TCTCTTGGCTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
4715 TGAACTTCCGAACTTTTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * * * *
4737 TCTTGCGAGTTCTTTTATAACCTCGGTTTCTTAGAGTATTC-A-A-G----A--CCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
4793 TTTTTTGAACATTCCATGCTCGAGAAATCACAAGCATTTGGTCTAAATAGTTTGTCATTTTGTAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGC-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
4858 ACAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAATTATTTCTCTTTTGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
4923 TGAACTTTCGAACCTGTCAAAA
195 CGAACTTCCGAACTTGTCAAAC
* * * * * *
4945 TTTTACGAGTTTTTTTATAATTTTTGTTCCATAAAGTATTCTAGACGATCCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* *
5010 TTTTTCGAAC-TTGCCATGCTCGGGAAATCGCTTCATTTGGTCTAAATAGTATG-CATTTTGTAA
66 TTTTTCGAACATT-CCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** * * *
5073 A-AAGGTTTGGTTGTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
130 ACAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
5137 ACGAACTTTCGAACTTGTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * *
5160 TTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGATGATTCATTCCTTCAAGTAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * *
5225 TTTTTCGAACATTCTATGCTCGGGATATCGCATCGTTTGGTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AA
* * * * * ** *
5290 AAAAGTTTTGTTGTTTGAATTCAAAACTTATTTACGTGAGAA-TAATT-TGTCTTGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
5353 CGAACTTCCGAACTTTTCCAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * * * * * ** *
5375 TTTTACGAGTTCTTTTATAACTTCGATTCCATAGAGTATTCTAGACAATCCTTTAATTCAAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * * * *
5440 -TTTACTAAACATTCCATGCTCAGGAAATTGTATCATTCGATCTAAATTGTTTGTCACTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
5504 ACAAGTTTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
5568 CGAACTTCCAAACTTGTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * *
5590 TTTTACGAG-TCTGTTATAACTTCGTTTCCTTAAAATATTCAAGACGATCCATTCCATT-GAGCA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* ** *
5653 ATTTTT-GAACATTCTATGGAC--GAAATCGTATCATTTGGTCTAAATAGTTTG-CATTTTGT-A
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** * * * * *
5713 A-AAGGTTTGGTTGTTTGAATTAAAAACTTATTTACGTGAAAATTGCAACATTTGGTATAAATAG
130 ACAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTG------TT--TCT--CT-C
* * * * * *** * *
5777 TTTGTCATTTTGTAAGCAACTTTTCGTGTTTGAATTAAAAGAAGTT
183 TTGGT--TCTTGGACG-AAC-TTCCGAACTTG---T--CA-AA--C
* * * * * * * *
5823 TTTTACATGGGAATT-GTTTCT--CTCTTGGTT-CTTGGACGAACTTC-TGAACTTG-TCAAAAT
1 TTTTAC----GAGTTCTTTTATAACT-TTGGTTCCTT-AAAGTA-TTCAAG-AC--GATC--CAT
* ** * * *** **
5882 T--TTACGAG--TTCTTTTATAAC-TTCGATTC-CTTAAAGTATTCGAGACGATCCA-TTCCTCC
54 TCCTT-CGAGCAAT-TTTTCGAACATTCCATGCTCGGGAA--A-TC--G-C-AT-CATTTGGT-C
* ** * * * * ****
5940 AAGCAATTTTTTGATCATTCCATGCTTGGGAAATCGTATCATTT-GTC--TAAATTGTTTGAC--
108 TA--AATAGTTTG-TCA-T---T--TT-GTAAA-C--AACTTTTGGTCTTTGAATT-AAAAACTT
* * * * * * *** *** ** * * *
6000 ATTT-TGTAAACAAGT-TTTGT-TCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTC
159 ATTTACGT-GAGAATTGTTTCTCTCTTGGTTCT-TGGACGAACTT-C-CGA-ACTTG------TC
***
6062 ATGG
213 AAAC
* *
6066 TTCTTGGACGAACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
1 TT-TT--ACG-A--GTT-C----T-TTT-ATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
6131 TTCATTCGAGCAATTTTCCAAACATTCCTTGCTCGAGATATCGCATCATTTGGTCTAAATAGTTT
53 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
6196 TTCATTTTGTAAAGAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAAATGTTTCTCTC
118 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
*
6261 TTGGTTCTTGGATGAACTTCCGAACTTGTCAAAC
183 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * * * * *
6295 TTTTACAAGTTCTTTTATAACTTTGGTTCCATAACGTATTCAAGATGCTCCACTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
6360 TTTTTCGAACATTCCATGCTCAGAAAATCGCGTTATTTGGTCTAAATAGTTTGTAATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-AA
* ** *
6425 AAAAAATTTGTTGC-TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
130 ACAACTTTTGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
6489 ACGAACTTTCGAACTTGTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * * ** *
6512 TATTACTAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCATTACTTTAAGTAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * ** * * **
6577 -TTTTCTAAACATTTCATTCTCGAGAAATAACAGCATTTGGTCTAAATAGTTCT-T-TTTTTGGG
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTA
* * * ** * *
6639 AACAAGTTATT-GTCTTTGAATCAACAACTTATTTGTGTGAGAATTG-TT-TCTCTTAGTTCTTA
129 AACAACTT-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
6701 GACGAACGTCCGAACTTGTCAAAC
193 GACGAACTTCCGAACTTGTCAAAC
* * * * *
6725 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTACATTATTCTAGACGATCCATTCCTTGGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * ** * *
6790 -TTTTCTAAACATTACATGCTCAGGAAATGGCATCATTTAATATAAATAGTGTGTCATTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * ** *
6854 AAAACTTTTGGTCTTTGGATTAAACAC-TGTTTACGTGAGAATTGTTTCTGTCTTTTTTCTTTGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
** * *
6918 TAAATTTTCGAACTTGTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * *
6940 TTTCATGAGTTCTTTTATAACTTTGGTTTCTTAGAGTATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * **
7005 -TTTTCCAATCATTCCATGCTCAGGATATCGTATCATTCGGTCTAAATTGTTTAACATTTTGTAA
66 TTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
** ** * *
7069 ACAGGTTTTATTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
7134 C-AA-----G-----G------
195 CGAACTTCCGAACTTGTCAAAC
* * * * *
7139 TTTTACGAGTTCTTTCATAA-TTCGGTTCCTTAAAGTATTAAAGATGATCTC-TTCGTTCGAGCA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC-CATTCCTTCGAGCA
* * * * * * *
7202 A-TTTTCTGAACATTTCAAT-CTCGTGAGATCTCGTCATTTGGTCTAAGTAGTTTTTCATTTTGT
65 ATTTTTC-GAACA-TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
7265 AAATAACTTTTGGTCTTTGAGTTAAAAACTTGTTTATGTGAGAATTATTTCTCTCTTGGTTCTTG
128 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
7330 GATGAACTTCCGAACTTGTCAAAC
193 GACGAACTTCCGAACTTGTCAAAC
* * * * * *
7354 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCCTTCTAACAT
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* ** * * * *
7419 TTTTTTGAACATTCCATGCTTAGTAAATCACGTCATTTGGTCTAAATAGTTTGTAATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * * ** * ** *
7484 GTAGTTTTGTTAATTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTATTTATTCTTAGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
**
7549 GAACTTTTGAACTTGTCAAAC
196 GAACTTCCGAACTTGTCAAAC
* * * * * *
7570 TTTTACGAGTTCTTTCACAAGTTTGGTTCCTTAAAGTATTCTAGACTACCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * * *
7635 -TTTTCTAAACATTCCATTCTTGGGAAATAGCAGCATTTGATCAAAATAGTTCT-TCATTTTG-G
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT-TGTCATTTTGTA
* * *
7697 AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTACGTGAGAA-TGTTT-TCTCTTTGTTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
7760 ACAAACTTTCAAACTTGTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* * *
7783 TTTTACGAGTTCTTCTATAACTTTGGTTCCTTACAGTATTCAAGATGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
7848 -TTTTCTAAACATTACATGCTCGGGAAA-CGGCATCATTTGGTATAAATAGTGTGTCATTTTGTA
66 TTTTTC-GAACATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * * *
7911 AATAACTTTTGGTCTTTG--GT---CACTTA-TTACGTGAGAATCGTTTCTCTTTTGGTTCTTTG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
7970 ATGAACTTTCGAACTTTTCAAAC
194 ACGAACTTCCGAACTTGTCAAAC
* ** * *
7993 -TCTACGAGTTCTTTTATAACTTCAGTTTCTTAGAGTATTC-A-A-GA-CC--T--TT-GAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* *
8048 TTTTTTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * * *
8113 CAACTTTTGGTCTTTGAATTAAATGCTTATTTACGTGAGAATTGCTTCTCTTTTGGTTCTTGGAT
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * *
8178 GAACTTCCCAACTTATCAAAA
196 GAACTTCCGAACTTGTCAAAC
* * * * * * *
8199 TTTTACGAGTTCTTTTATAATTTTTGTTCCATAAGGTGTTCTAGACGATCCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* *
8264 TTTTTCGAACTTTCCATGCTCGGGTAATCGCATCATTTGGTCTAAATAGTTTG-CATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
** * *
8328 -AAGGTTTGGTTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
131 CAACTTTTGG-TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
**
8392 CGAACTTTTGAACTTGTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * * *
8414 TTTTACGAGTTCTTTCATAACTTCGGTTCCTTAGAGTATTCAAGACGATTCATTCCTTCGAGTAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * * *
8479 -TTTTCTAAACATTCTATGCTCGGGATATCACATCGTTTCGTCTAAATATTTTTTCATTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT-A
* * ** * * *
8543 AAAAAGTTTTATTGTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TGTCTTGGTTCTTGA
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* *
8606 ACGAACTTCCGAACTTTTCCAAC
194 ACGAACTTCCGAACTTGTCAAAC
* * * * * **
8629 TTTTACGAGTTCTTTTATAACTTCGATTCCATAAAGTATTCAGGACGATCCTTTAATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
8694 -TTTTCTAAACATTCCATTCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCACTTTGCAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
8758 GCAAGTCTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
8822 CGAACTTCCAAACTTGTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
8844 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCATT-GAGCA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * ** * * * * *
8908 ATTTTT-TAACATTCCATTCTTTGGAAATCACATCACTTAGTCTGAATAGTTTTTCATTTTGTAA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *** * *
8972 ATAAGTTTTGCTCTTTAAAACGAAAACTTATTTACGTGAGAATTG--TGTCTCTTGGCTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
9035 TGAACTTCTGAACTTTTCAAAC
195 CGAACTTCCGAACTTGTCAAAC
* * * * * *
9057 TTTTACAAGTTCTTTTATAAC-TTGGATCCTTACAGTATTTAGGACGATTCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
9121 TTTTTCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTAAATTGTTTGTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * *
9186 CAACTTTTGGTCTTTGAATTAAACACTTACTTACATGAGGATTG-TTCTCCCTTGGTTTTTGGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * *
9250 GAACTTCCAAACTAGTCAAAG
196 GAACTTCCGAACTTGTCAAAC
* * * * * *
9271 TTTTACGAGTTCTTTTACACCTTCGGTTCCTTAAAGTATTCAAGACAATCCACTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
** ** * *
9336 TTTTTCGAACATTCCATTTTCGAAAAATCGCAACATTTGGTATAAATAGTTTGTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * * *
9401 CAACTTCTCGTGTTTGAATTAAAAGAAGTTTTTTTACATGGGAATTGTTTCTCTCTTGGTTCTTG
131 CAACTTTTGGTCTTTGAATT-AAA-AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* ** *
9466 GACAAACTTCTTAACTTGTCAAAA
193 GACGAACTTCCGAACTTGTCAAAC
* **
9490 TTTTACGAATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
9555 TTTTTC-AATCATTCCATGCTTGGGAAATCGCATAATTCGGTATAAATTA-TTTGACATTTTGTA
66 TTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTCATTTTGTA
* *
9618 AACAAGTTTTGTTCTTTGGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
129 AACAACTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
9682 AACGAA
193 GACGAA
9688 TTTTTACGAG
Statistics
Matches: 5304, Mismatches: 1092, Indels: 526
0.77 0.16 0.08
Matches are distributed among these distances:
198 132 0.02
199 27 0.01
200 73 0.01
201 7 0.00
202 1 0.00
203 3 0.00
204 14 0.00
205 104 0.02
206 169 0.03
207 74 0.01
208 84 0.02
209 65 0.01
210 55 0.01
211 32 0.01
212 45 0.01
213 677 0.13
214 483 0.09
215 1545 0.29
216 896 0.17
217 284 0.05
218 71 0.01
219 159 0.03
220 6 0.00
221 3 0.00
222 1 0.00
223 8 0.00
224 3 0.00
225 7 0.00
226 2 0.00
228 3 0.00
229 5 0.00
230 1 0.00
231 2 0.00
233 11 0.00
234 3 0.00
235 10 0.00
236 18 0.00
237 25 0.00
238 22 0.00
239 16 0.00
240 3 0.00
241 1 0.00
242 6 0.00
243 8 0.00
244 11 0.00
245 9 0.00
246 13 0.00
247 9 0.00
248 2 0.00
249 10 0.00
250 3 0.00
251 11 0.00
252 15 0.00
253 12 0.00
254 11 0.00
255 6 0.00
257 4 0.00
258 9 0.00
259 7 0.00
260 2 0.00
261 1 0.00
262 1 0.00
263 4 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTCCGAACTTGTCAAAC
Found at i:9850 original size:199 final size:199
Alignment explanation
Indices: 9490--16096 Score: 3098
Period size: 199 Copynumber: 31.6 Consensus size: 199
9480 CTTGTCAAAA
* *
9490 TTTTACGAATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * **
9555 TTTTTC-AATCATTCCATGCTTGGGAAATCGCATAATTCGGTATAAATTA-TTTGACATTTTGTA
66 TTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTTTCATTTTGTA
* *
9618 AACAAGTTTTGTTCTTTGGAA-TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
129 AACAACTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
9682 AACGAAT
193 AACGAAT
* **
9689 TTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
9754 TTTTACAAACATTCCATGCTTGAGATATCTCATCATTTGGTCTAAATAGTTTTTC-TTTTGGTAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT-GTAA
* * * *
9818 ACAACTTTTGGACTTTGAATTAAAATCTTATTTACGTGAGAATTG-TT-TGTCTTGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
9881 CGAA-
195 CGAAT
* * ** * * ** *
9885 -TTTCCGA--ACTTGAACAACTTTTACGAGTTCCGTAAAGTATTCAAGACGATCCATTAATTTGA
1 TTTTACGAGTTCTTTTATAAC--TT-CG-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGA
* * * *
9947 GCAA-TTTTCTAAACATTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCATTTT
62 GCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * * * *
10011 GTAAACAACTTTCT-GTGTTTGAATTAAAAGATGTTTTTTACATGGGAATTATTTCTCTCTTGGT
126 GTAAACAACTTT-TGGTCTTTGAATTAAAA-A-CTTATTTACGTGAGAATTGTTTCTCTCTTGGT
10075 TCTTAGACGAACTTCTGAACTTGT
188 TCTT----GAA---C-GAA----T
* *
10099 CAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTCG
1 -----TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG
* * * * * **
10164 AGCAATTTTTCGATCATTCCATGCTCCGGAAATCGTATCATTCGGTCTAAATTGTTTGACATTTT
61 AGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTT
* * * * *
10229 GTAAATAAGTTTTGTTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCT
126 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
** *
10294 TGGGCGAAC
191 TGAACGAAT
* * * * **
10303 TTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATTCGTTTATT-GAAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AGCA
* * * *
10367 ATTTTCCAAACATTCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTTTCATTTGGTAA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAA
* * * *
10432 ACAACTTTTGGACTTTGAATTAAAATA-TTTTTTACGTGAGAATTG-TT-TGTCTTGGTTCTTGG
130 ACAACTTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
10494 ACGAA-
194 ACGAAT
* * * * ** * * *
10499 -CTTCCGA--ACTTGTCCAACTTTTACTAGTTCTTTTATAACTTCGATTCCCTAA-A-G-T--AT
1 TTTTACGAGTTCTTTTATAAC--TT-C-GGTTC-CTTA-AA-GT--ATT--C-AAGACGATCCAT
*** * * * * * * * *
10556 TCAAGGCGATCCATTAATTCGAGCAATT---T--TC--TAAA-CG-TTCCA--TGCTCGGGAAAT
54 TC-CTTCGAGCAATT-TTTCGAAC-ATTCCATGCTCGGGAAATCGCAT-CATTTGGTC--TAAAT
* * * ** *
10610 CG--TATCATTTGGTCTA-AA-TTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGCATTAAAA
113 AGTTTTTCATTTTGTAAACAACTT-TTGGTC--TTTG-----AA----------TT--A--AAAA
** * * *
10671 ACT-TATTCCGTGAGAATTGTTTCTCTCTCGGTTCTTGGATGAACTTCCAAACTTGTCAAAC
156 CTTAT-TTACGTGAGAATTGTTTCTCTCTTGGTTC-T---TG--------AAC--G---AAT
* *
10732 TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * * * *
10796 ATTTTT-GAACATTTCATTCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGTAA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAA
* * * * *** * *
10860 ATAAGTTTTGCTCTTTAAAACGAAAACTTATTTACGTGAGAATTG--TGTCTCTTGGCTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-T---
10923 TGAACTTCTGAACT
191 TGAA---C-GAA-T
* * * * * *
10937 TTTCAAACTA-TTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAAGACGATTCATTCC
1 TTT--TACGAGTT-C----T--TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * *
11000 TTCGAGCAATTTTTCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTAAATTGTTTGTCA
57 TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
* * * * *
11065 TTTTGTAAACAACTTTTGGTCTTTGAATTAAACACTTACTTACATGAGGATTG-TTCTCCCTTGG
122 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
*
11129 TTTTTGGACGAACTTCCGAACTAGTCAAAG
187 ---TT-------CTT--GAAC--G---AAT
* * * * * *
11159 TTTTACGAGTTCTTTTACAACTTCAGTTGCTTAAAGTATTCAAGACAATCCACTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* ** *** * * * * *
11224 TTTTTCGAGCATTCCATTTTCAAAAAATCACAACATTTGGTATAAATAGTTTGTCATTTCGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* * * * * * *
11289 CAACTTTTTGTGTTTGAATTAAAAGAAGTTTTTTACATGGGGATTGTTTCTCTCTTGGTAATTGG
131 CAACTTTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGG---TT--
*
11354 ACGAACTTCTGAACTTGTCAAAA
189 -----C-T-TGAAC--G---AAT
* *
11377 TTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCTATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * ** * * ***
11442 TTTTTTGATCATTCCATGCTCGAGAAATCGCATCATTCCGTCTAAATTGTATAAAATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
** * * *
11507 CATGTTTTGTTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
*
11572 GAAC
196 GAAT
* *
11576 TTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
11641 TTTTCCAAACGTTCCATGCTCGAGATATCGCATTATTTGGTCTAAATAGTTTTTCATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* * *
11706 CAACTTTTGGTCTTTGAATTAAAATCTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTGGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G--
*
11771 AAACTTCCTAACTTGTCCAAC
193 ---------AAC--G---AAT
* * * * * * * * ** *
11792 TTTTACTAGTTCTTTTACAATTTCGATTCCATACAGTATTCAAGTCGATACATTATTTCGACCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * *
11857 -TTTTCTAAACGTTTCATGCTCGGGAAATCGTATCATTTGGTCTAAAT-TTTTTTCATTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAA
* * *
11920 ACAAGTTTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
130 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT---
*
11984 CGAACTTCCAAACTTGTCAAAC
192 -G--------AAC--G---AAT
*
12006 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GAGCA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCA
* * * *
12070 ATTTTT-GAACATTCCAAT-CTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGTA
65 ATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTA
* * * * * * * *
12133 AATAAGTTTTGCTCTTTAAAATGAAAACTTATTTAGGTGAGAATTG-TT-TCTCTTGGCTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-T--
12196 ATGAACTTTTGAACT
191 -TGAAC----GAA-T
* ** * * * *
12211 TTTCAAAC-TTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAAGACGATTCATTCC
1 TTT--TACGAGTT-C----T--TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * *
12274 TTCGAGCAATTTTTTGAACATTCCATTCTCGGCAAATCGCATCATTTGCTCTAAATTGTTTGTCA
57 TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
** * * * *
12339 TTTTGTAAACAACTTTTGGTCTTTGAATTAAGCACTTACTTACGCGAGGATTG-TTCTCCCTTGG
122 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
12403 TTCTTGGATGAACTTCCTAACTAGTCAAT
187 TTC-T---TG--------AAC--G--AAT
* * * * *
12432 GTTTTACGAGTTCTTTTACAACTTCGGTTCCTTGAAGTATTCAAGACAATCCACTCCTTCGAGAA
1 -TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* ** * *
12497 AGTTTTCGAACATTCCATTTTCGGGAAATCGCAACATTTGGTATAAATAGTTTGTT-A-TTTGTA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTA
* * * * * ** *
12560 AACAACTTTTTGTGTTTGAATT-AAAAGTTCTTT---T-AAAACTT-TTTGAACT-TT--TT-GT
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAA-TTGTTT-CTCTCTTGGTTCTT
*
12615 CAA--AA-
192 GAACGAAT
* *
12620 TTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * ** * **
12685 TTTTTCGATCATTTCATGCCCGAAAAATCGCATCATTCT-GTCTAAATTGTTTGACATTTT-TCA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATT-TGGTCTAAATAGTTTTTCATTTTGT-A
** * * * * * *
12748 AACAAGATTTGTTCTTTAAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTCCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
*
12813 ACAAAT
194 ACGAAT
* * * *
12819 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCTATTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * *
12884 TTTTACAAACATTCCATGCTCAGGATATCGCATCATTTGG-CTAAATAGTTTTTCACTTTCTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* * *
12948 CAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTACTCTCTTGGTTCTTGGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT----
13013 GAACTTTCGAACT
192 GAA----CGAA-T
* * * **
13026 TGTTAAACTATTGTGAGT-TCTTTCATAACTTCGGTT-CTTAAAGTATTAAAGATAATCCATTCC
1 T-TT-TACGA--GT---TCT-TTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC
* * * * * * * * *
13089 TTCGTGC-AGTTTTCTGAACTTTCCATTCTTGGGAAATAGCAGCATTTGGTCAAAATAGTTCTT-
57 TTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTC
** * * * *
13152 -TTTTGGGAACAAGTTTTGGTCTTTGAATCAACAACTTATTTACGTAAGAATTGTTTCTCTTAGT
121 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-----
* * *
13216 TCTTGGATGAACTTCCAAACTTGTCAAAC
181 TCTTGG-T--TCTT--GAAC--G---AAT
* * * * * * *
13245 TTTTATGAGTGCTTTTATAACTTCGGTTCCTTACATTATTCTAGTCGATCCATTCCTTGGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * * *
13310 -TTTTCTAAACATTACATGCTCGGG---TGGCATCATTTAGTATAAATAGTGTGTCATTTTGTAA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAA
* * * * *
13371 A-AATCTTTTTGTCTTTGGATTAAACAC-TAATTACGTGAGAATTGCTTCTCTCTTGGTTCTTTG
130 ACAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTG
13434 AA-GAAT
193 AACGAAT
* * * * * *
13440 TTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTTCTTAGAGTATTAAAGATGA
1 TTTT--AC--G----A-GTT--C----T--TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * *
13505 TCCATTCCTTCGAGCAA-TTTTCCAATCATTCCATGCTCGGGAAATAGTATCATTTGGTCAAAAT
49 TCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAAT
* ** * * *
13569 TGTTTGACATTTTGTAAACAAGTTTTGTTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTT
113 AGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* *
13634 CTCTCTTGGTTCTTGGACGAAG
178 CTCTCTTGGTTCTTGAACGAAT
* * * * *
13656 TTTTATGAGTTCTTTCATAATTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCGTTCGAGCTA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * * * ** * *
13721 TTTTTTGAACATTCCAAGTTCGTGATATCGTGTCATTTGGTCTAAATTGTTTTTCATTTTATAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* *
13786 AAACTTTTGGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTACTCTCTCGGTTCTTGGAC
131 CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-T--T-TCTC---TCTT-G--
**
13851 GAACTTCCGAACTTGTCAAT
186 GTTCTT--GAAC--G--AAT
* *
13871 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAACGTATTCAAGACGATCCACTCCTTCGAGCA
1 -TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
* * * * *
13936 ATTTTTTGAACATTTCATACTCGGGAAATCACATCATTTGTTCTAAATAGTTTGTT-ATTTTGTA
65 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTA
* * * * *
14000 TACAAATTTTTGTGTTTGAATTAAAAGAACTTATTTACCTGAGAATTGTTTCTCTCGTT-GTTCT
129 AACAACTTTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTC-
14064 TGTTGAACTTTTGAAATACT
190 --TTGAAC----G--A-A-T
* *
14084 CAAAATTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATTCAAGACGATCCACTT-CTTC
1 -----TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTC
* * * *
14148 GAGCAATTTTTCGAACATTCGATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTAATTT
60 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTT
* * * * * *
14213 TGTAAA-ATAGTTTTGTTGTTTAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTTGTT
125 TGTAAACA-ACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
*
14277 CTTGGACGAACT
189 CTTGAACGAA-T
* * * * * * *
14289 TTCGAACTTGTCAAACTTTTACGAGTTCTTTCATAAGTTCGATTCCTTAAATTATTCAAGACTAT
1 TT-----TT-AC-GA--GTT-C----T-TTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* ** * * * ** * * * *
14354 TCACACCTTCGAGCAA-TTTTCTGTACGTTCCATTCTCAAGAAATAGCAGCTTTTGG--GAACA-
50 CCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAA-AT
* * * * *
14415 AGTTTTGGTC--TTTGAATCAAA-AACTTATT--TATGTG-A-T---AA-TTGTTTCTCTTG-G-
113 AGTTTT--TCATTTTG--T-AAACAACTT-TTGGTCTTTGAATTAAAAACTTATTT-ACGTGAGA
* * * * ** * * *
14467 -TTCTTGGACGAACT-TTCGAACTTG-TCAAAC
171 ATTGTT--TC--TCTCTTGGTTCTTGAACGAAT
* * * ** *
14497 TTTTACGAGTTCTTTTATTATTTCAGTTCAATAAAGTTTTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
14562 TTTTTCGAACATTCCATGCTCGGGAAATCGTATCATTTAGTCTAAATAGTTTGTAATTTTGTAAA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* * * * * * *
14627 -AAGGTTTTGTTGTTTCAATTAAAAAATTATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGA
131 CAA-CTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-T---
14691 TGAACTTTTGAACT
191 TGAAC----GAA-T
* * *
14705 TGCCAAACATTTACGAGTTCTTTCATAACTTCAGTTTCTTAAAGTATTCAAGACGATCCATTCCT
1 T--------TTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * * *
14770 TCGAGCAATTTTTTGAACATTCCACT-TTTGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCA
58 TCGAGCAATTTTTCGAACATTCCA-TGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCA
* * * * *
14834 TTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTTTTTAAGTGAGAATTGTTTCTCTTGGTT
122 TTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-----T
**
14899 CTTGGACAAACTTCCGAACTCGTCTAACT
182 CTTGG---TTCTT--GAA--CG---AA-T
* * * *
14928 TTTT-CGAGTTCTTTTATAACTTCGATTCCTTAATGTATTCAAGATGATCCATTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * ** * *
14992 -TTTTCTAAACATTTCATGCTTGGGAAATCATATCATTTAGTCTAAATTA-TTTGTCATTTTGTA
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTTTCATTTTGTA
*
15055 AACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
129 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT--
*
15120 ACGAACTTCCAAACTTGTCAAAC
192 --G--------AAC--G---AAT
* *
15143 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCTAGACGATCCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
15208 TTTTT-GAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTTTTCATTTTTTAGA
66 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
* * * * *
15272 CAAGTTTTGGTCTTTAAAATT-AAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGCTGTTGGA
131 CAACTTTTGGTCTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
15334 CGAACT
195 CGAA-T
* * * * * * *
15340 TCCGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCCAGGCAAT
1 T------TTTAC-GA--GTT-C----T--TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAT
* * * * *
15404 CCATTCCTTCAAGCAATTTTTCGAACATTTCATACTCGGGAAATAGCATCATTTGGTATAAATAG
50 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAG
* * *** * *
15469 TGTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAATTTTTATTTACCTGAGGATTG-TTCT
115 TTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* *
15533 CCCTTGGTTCTTGGACGAACT
180 CTCTTGGTTCTTGAACGAA-T
** * * *
15554 TCCGAACTTGTCAAAC-TTTTACGAGTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGACAA
1 T------TT-T---ACGAGTT-C----T--TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
* * * ** * *
15618 TCCACTCCTTCGAGCAATTTTTCGAGCATTACATTTTCGGGATATCGCATCATTTGGTATAAATA
49 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATA
** * * * * * * * *
15683 GTTAGTAATTTTATAGACAAGTTTTTGTTTTTGAATTAAAAGAACTTTTTTACATGAGAATTGTT
114 GTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTT
*
15748 TCTCTCTTGGTTCTTGGATGAACTTTCGAAC
177 TCTCTCTTGGTTC-T---TGAA----CGAAT
* * * * * * *
15779 TTTTACGAGTTATTTTATAACTTTGGTTCCTTAACGTATTCATGACAATCCACTCATTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
15844 TTTTTC-AGACATTCCATG-TGGGGAAATCACATCATTTGG-ATAAATTGTTTGTT-ATTTTGTA
66 TTTTTCGA-ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTA
* * * * * **
15905 AATAAATGTTT-GTATTTGAATTAAAAGAACTTATTTAAGTGAGAATTATTT-TCAGTTCTTTTT
129 AACAACT-TTTGGTCTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTC---TCTTGGT
* * * *
15968 TAATTTG-TCAAAA
188 T--CTTGAACGAAT
* * * *
15981 TTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCATTCAAGACGATCCATTCCTTCGAGCAA
1 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
* * * *
16046 -TTTTCAAAACATTCTATGCTCGAGAAATCGTATCATTTGGTCTAAA-AGTTT
66 TTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
16097 GTGAAAGGTT
Statistics
Matches: 4940, Mismatches: 966, Indels: 1000
0.72 0.14 0.14
Matches are distributed among these distances:
187 99 0.02
188 20 0.00
189 11 0.00
191 9 0.00
192 76 0.02
193 47 0.01
194 18 0.00
195 33 0.01
196 13 0.00
197 147 0.03
198 107 0.02
199 701 0.14
200 19 0.00
201 33 0.01
202 83 0.02
203 41 0.01
204 17 0.00
205 28 0.01
206 22 0.00
207 82 0.02
208 41 0.01
209 122 0.02
210 43 0.01
211 65 0.01
212 242 0.05
213 438 0.09
214 486 0.10
215 597 0.12
216 616 0.12
217 188 0.04
218 301 0.06
219 18 0.00
220 24 0.00
221 13 0.00
222 27 0.01
223 9 0.00
224 5 0.00
225 6 0.00
226 8 0.00
227 7 0.00
228 7 0.00
229 8 0.00
230 4 0.00
231 3 0.00
232 8 0.00
233 9 0.00
234 11 0.00
235 13 0.00
236 13 0.00
237 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (199 bp):
TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA
TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAA
CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
GAAT
Found at i:10900 original size:215 final size:214
Alignment explanation
Indices: 10300--11577 Score: 1338
Period size: 214 Copynumber: 5.9 Consensus size: 214
10290 TTCTTGGGCG
* * * * * *
10300 AACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATTCGTTTATT-GAA
1 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCG-A
** * * *
10364 GCAATTTTCCAAACATTCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTTTCATTTGG
65 GCAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
10429 TAAACAACTTTTGGACTTTGAATTAAAATA-TTTTTTACGTGAGAATTG-TT-TGTCTTGGTTCT
129 TAAACAAGTTTTGGTCTTT-AAATAAAA-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
*
10491 TGGACGAACTTCCGAACTTGTCC
192 TGGACGAACTTCCGAACTTGTCA
* * * *
10514 AACTTTTACTAGTTCTTTTATAACTTCGATTCCCTAAAGTATTCAAGGCGATCCATTAATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * *
10579 CAATTTTCTAAACGTTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATTGTTTGTCATTTTGT
66 CAATTTT-TGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
10644 AAACAAGTTTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTCGGTTCTTG
130 AAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
10708 GATGAACTTCCAAACTTGTCA
194 GACGAACTTCCGAACTTGTCA
*
10729 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GA
1 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATT-CATTCGA
* * * * * * *
10793 GCAATTTTTGAACATTTCATTCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGT
65 GCAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * *
10858 AAATAAGTTTTGCTCTTTAAA-ACGAAAACTTATTTACGTGAGAATTG--TGTCTCTTGGCTCTT
130 AAACAAGTTTTGGTCTTTAAATA--AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
10920 GGATGAACTTCTGAACTTTTCA
193 GGACGAACTTCCGAACTTGTCA
* * * * * *
10942 AACTATTACGAGTTCTTTTATAACTTGGA-TCCTTACAGTATTTAAGACGATTCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * *
11006 CAATTTTTCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTAAATTGTTTGTCATTTTGT
66 CAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * * * *
11071 AAACAACTTTTGGTCTTTGAATTAAACACTTACTTACATGAGGATTG-TTCTCCCTTGGTTTTTG
130 AAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
11135 GACGAACTTCCGAACTAGTCA
194 GACGAACTTCCGAACTTGTCA
* * * * *
11156 AAGTTTTACGAGTTCTTTTACAACTTC-AGTTGCTTAAAGTATTCAAGACAATCCACTCATTCGA
1 AACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCATTCATTCGA
* ** *** * * * *
11220 GCAATTTTTCGAGCATTCCATTTTCAAAAAATCACAACATTTGGTATAAATAGTTTGTCATTTCG
65 GCAATTTTT-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * * * * * * **
11285 TAAACAACTTTTTGTGTTTGAATTAAAAGAAGTTTTTTACATGGGGATTGTTTCTCTCTTGGTAA
129 TAAACAAGTTTTGGTCTTT-AAAT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
*
11350 TTGGACGAACTTCTGAACTTGTCA
191 TTGGACGAACTTCCGAACTTGTCA
* * * * *
11374 AAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCTATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * ** * * ***
11439 CAATTTTTTGATCATTCCATGCTCGAGAAATCGCATCATTCCGTCTAAATTGTATAAAATTTTGT
66 CAA-TTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
11504 AAACATGTTTTGTTCTTTGAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
130 AAACAAGTTTTGGTCTTT-AAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
11569 GACGAACTT
194 GACGAACTT
11578 TTACGAGTTC
Statistics
Matches: 886, Mismatches: 158, Indels: 38
0.82 0.15 0.04
Matches are distributed among these distances:
211 3 0.00
212 35 0.04
213 155 0.17
214 264 0.30
215 210 0.24
216 47 0.05
217 19 0.02
218 148 0.17
219 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (214 bp):
AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
CAATTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGTCTTTAAATAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CGAACTTCCGAACTTGTCA
Found at i:11203 original size:427 final size:427
Alignment explanation
Indices: 10300--16255 Score: 4685
Period size: 427 Copynumber: 14.2 Consensus size: 427
10290 TTCTTGGGCG
* * * * *
10300 AACTTTTATGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATTCGTTTATT-GAA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCG-A
* * * * *
10364 GCAATTTTCCAAACATTCCATGCTCGGGATATCGCATCATTTGGTCTAAATAGTTTTTCATTTGG
65 GCAATTTT-CGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTG
** * * * * * * *
10429 TAAACAACTTTTGGACTTT-GAATTAAAATATTTTTTACGTGAGAATTGTTTGTCTTGGTTCTTG
129 TAAACAACTTTTGCTCTTTAAAATGAAAA-CTTATTTACGTGAGAATTGTCTCTCTTGGCTCTTG
* * * * * *
10493 GACGAACTTCCGAACTTGTCCAACTTTTACTAGTTCTTTTATAACTTCGATTCCCTAAAGTATTC
193 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGA-TCCTTACAGTATTC
* * ** * * * *
10558 AAGGCGATCCATTAATTCGAGCAA-TTTTCTAAACGTTCCATGCTCGGGAAATCGTATCATTTGG
257 AAGACGATTCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGC
* *
10622 TCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGCATTAAAAACTTATTCCGTGAGAA
321 TCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTACGTGAGAA
* * *
10687 TTGTTTCTCTCTCGGTTCTTGGATGAACTTCCAAACTTGTCA
386 TTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* *
10729 AACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CATTCGA
* * * * *
10793 GCAATTTTTGAACATTTCATTCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGT
65 GCAATTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * *
10858 AAATAAGTTTTGCTCTTTAAAACGAAAACTTATTTACGTGAGAATTGTGTCTCTTGGCTCTTGGA
130 AAACAACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTCTCTCTTGGCTCTTGGA
* * * *
10923 TGAACTTCTGAACTTTTCAAACTATTACGAGTTCTTTTATAACTTGGATCCTTACAGTATTTAAG
195 CGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGATCCTTACAGTATTCAAG
* *
10988 ACGATTCATTCCTTCGAGCAATTTTTCGAACAATCCATTCTCGGGAAATCGCATCATTTGCTCTA
260 ACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCTA
* * * *
11053 AATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAACACTTACTTACATGAGGATTG
325 AATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTGAGAATTG
* * *
11118 -TTCTCCCTTGGTTTTTGGACGAACTTCCGAACTAGTCA
389 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * * * *
11156 AAGTTTTACGAGTTCTTTTACAACTTCAGTTGCTTAAAGTATTCAAGACAATCCACTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * *** * * * *
11221 CAATTTTTCGAGCATTCCATTTTCAAAAAATCACAACATTTGGTATAAATAGTTTGTCATTTCGT
66 CAA-TTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * * * * * *
11286 AAACAACTTTTTG-TGTTTGAATTAAAAGAAGTTTTTTACATGGGGATTGTTTCTCTCTTGG-TA
130 AAACAAC-TTTTGCTCTTTAAAAT-GAA-AACTTATTTACGTGAGAATTG--TCTCTCTTGGCT-
* * * * *
11349 ATTGGACGAACTTCTGAACTTGTCAAAATTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGT
189 CTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGT
* * *
11414 ATTCAAGACGA-TCTATTCCTTCGAGCAATTTTTTGATCATTCCATGCTCGAGAAATCGCATCA-
253 ATTCAAGACGATTC-ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * *** * * *
11477 TTCCGTCTAAATTGTATAAAATTTTGTAAACATGTTTTGTTCTTTGAAATAAAAACTTATTTACG
317 TTGC-TCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACG
11542 TGAGAATTGTTTCTCTCTTGGTTCTT-G--G---------AC--G---
380 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
*
11573 AACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * * * *
11638 CAATTTTCCAAACGTTCCATGCTCGAGATATCGCATTATTTGGTCTAAATAGTTTTTCATTTTGT
66 CAATTTT-CGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * * *
11703 AAACAACTTTTGGTCTTT-GAATTAAAATCTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTT
130 AAACAACTTTTGCTCTTTAAAATGAAAA-CTTATTTACGTGAG-AAT-TGTCTCTCTTGGCTCTT
* * * * * * *
11767 GGACAAACTTCCT-AACTTGTCCAACTTTTACTAGTTCTTTTACAATTTCGATTCCATACAGTAT
192 GGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGA-TCCTTACAGTAT
* * ** * * * * *
11831 TCAAGTCGATACATTATTTCGACCAA-TTTTCTAAACGTTTCATGCTCGGGAAATCGTATCATTT
255 TCAAGACGATTCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
11895 GGTCTAAATT-TTTTTCATTTTGTAAACAAGTTTTGGTCTTTGCATTAAAAACTTATTCCGTGAG
319 GCTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTACGTGAG
*
11959 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
384 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
*
12003 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATT-CATTCGA
* * * * *
12067 GCAATTTTTGAACATTCCAATCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGT
65 GCAATTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * *
12132 AAATAAGTTTTGCTCTTTAAAATGAAAACTTATTTAGGTGAGAATTGTTTCTCTTGGCTCTTGGA
130 AAACAACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTCTCTCTTGGCTCTTGGA
* * * *
12197 TGAACTTTTGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTGGATCCTTACAGTATTTAAG
195 CGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGATCCTTACAGTATTCAAG
* * *
12262 ACGATTCATTCCTTCGAGCAATTTTTTGAACATTCCATTCTCGGCAAATCGCATCATTTGCTCTA
260 ACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCTA
* ** * *
12327 AATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAGCACTTACTTACGCGAGGATTG
325 AATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTGAGAATTG
* * *
12392 -TTCTCCCTTGGTTCTTGGATGAACTTCCTAACTAGTCA
389 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
** * * * * *
12430 ATGTTTTACGAGTTCTTTTACAACTTCGGTTCCTTGAAGTATTCAAGACAATCCACTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * *
12495 AAAGTTTTCGAACATTCCATTTTCGGGAAATCGCAACATTTGGTATAAATAGTTTGTT-A-TTTG
66 CAA-TTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTT-TTCATTTTG
* * * * * *
12558 TAAACAACTTTTTG-TGTTT-GAATTAAAAGTTCTTT---T-A-AA-------ACTT---T-TT-
129 TAAACAAC-TTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTCTCTCTTGGCTCTTG
* * * *
12604 ---GAACTT-T----TTGTCAAAATTTTACGATTTCTTTTATAACTTCGGTTCCTTAAAGTATTC
193 GACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTC
* * * * * **
12661 AAGAGGATCCATTCCTTCGAGCAATTTTTCGATCATTTCATGCCCGAAAAATCGCATCATTCTG-
257 AAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATT-TGC
* * * * *
12725 TCTAAATTGTTTGACATTTT-TCAAACAAGATTTGTTCTTTAAAATAAAAACTTATTTACGTGAG
321 TCTAAATTGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTGAG
* *
12789 AATTGTTTCTCTCTCGGTCCTT-G--G-A----C-AA--A-T--
384 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * *
12819 ---TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCTATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * * * *
12881 CAATTTTACAAACATTCCATGCTCAGGATATCGCATCATTTGG-CTAAATAGTTTTTCACTTTCT
66 CAATTTT-CGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * *
12945 AAACAACTTTTGGTCTTT-GAATTAAAATCTTATTTACGTGAGAATTATTACTCTCTTGGTTCTT
130 AAACAACTTTTGCTCTTTAAAATGAAAA-CTTATTTACGTGAGAATT-GT-CTCTCTTGGCTCTT
* * ** * * *
13009 GGACGAACTT-TCGAACTTGTTAAACTATTGTGAGTTCTTTCATAACTTCGG-TTCTTAAAGTAT
192 GGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTAT
* ** * * * * * * * *
13072 TAAAGATAATCCATTCCTTCGTGC-AGTTTTCTGAACTTTCCATTCTTGGGAAATAGCAGCATTT
255 TCAAGACGATTCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTT
* * * ** * * *
13136 GGTCAAAATAGTTCT-T--TTTTGGGAACAAGTTTTGGTCTTTGAATCAACAACTTATTTACGTA
319 GCTCTAAATTGTT-TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTG
* * *
13198 AGAATTG-TT-TCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCA
382 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * * * * * *
13242 AACTTTTATGAGTGCTTTTATAACTTCGGTTCCTTACATTATTCTAGTCGATCCATTCCTTGGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * ** * * * *
13307 CAATTTTCTAAACATTACATGCTCGGG---TGGCATCATTTAGTATAAATAGTGTGTCATTTTGT
66 CAATTTTC-GAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
** * * *
13369 AAA-AATCTTTTTG-TCTTT-GGATTAAACAC-TAATTACGTGAGAATTGCTTCTCTCTTGGTTC
130 AAACAA-C-TTTTGCTCTTTAAAATGAAA-ACTTATTTACGTGAGAATTG--TCTCTCTTGGCTC
* * * * * * * *
13430 TTTGAAGAATTTTTGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTTCTTAGAGTA
190 TTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGATCCTTACAGTA
* * * * * *
13495 TTAAAGATGATCCATTCCTTCGAGCAA-TTTTCCAATCATTCCATGCTCGGGAAATAGTATCATT
254 TTCAAGACGATTCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCATCATT
* * * * *
13559 TGGTCAAAATTGTTTGACATTTTGTAAACAAGTTTTGTTCTTTGAAATAAAAACTTATTTACGTG
318 TGCTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTG
13624 AGAATTGTTTCTCTCTTGGTTCTTGGACG---------A--AG---
382 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * *
13656 ---TTTTATGAGTTCTTTCATAATTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCGTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * * *** * *
13718 CTATTTTTTGAACATTCCAAGT-TCGTGATATCGTGTCATTTGGTCTAAATTGTTTTTCATTTTA
66 C-AATTTTCGAACATTCC-ATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * ** * * *
13782 TAAAAAACTTTTGGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTACTCTCTCGGTTCTT
129 TAAACAACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTG-T-CTCTCTTGGCTCTT
* * *
13847 GGACGAACTTCCGAACTTGTCAATCTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-ACGTAT
192 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACA-GTAT
* * * * * *
13911 TCAAGACGATCCACTCCTTCGAGCAATTTTTTGAACATTTCATACTCGGGAAATCACATCATTTG
255 TCAAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * * * * * * *
13976 TTCTAAATAGTTTGTTATTTTGTATACAAATTTTTGTGTTTGAATTAAAAGAACTTATTTACCTG
320 CTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAA-AACTTA-TTACGTG
** ** *
14041 AGAATTGTTTCTCTCGTT-GTTCTT-GTTGAACTTTTGAAA-TACTCA
382 AGAATTGTTTCTCTC-TTGGTTCTTGGACGAAC-TTCCAAACTAGTCA
* * *
14086 AAATTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATTCAAGACGATCCACTTC-TTCGA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCATTCGA
* * ** * *
14150 GCAATTTTTCGAACATTCGATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTAATTTTG
65 GCAA-TTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * * * * * *
14215 TAAA-ATAGTTTTGTTGTTTAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCT
129 TAAACA-ACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTG--TCTCTCTTGGCTCT
* * * * *
14279 TGGACGAACTT-TCGAACTTGTCAAACTTTTACGAGTTCTTTCATAAGTTCGATTCCTTAAATTA
191 TGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGA-TCCTTACAGTA
* ** * * * ** *
14343 TTCAAGACTATTCACACCTTCGAGCAA-TTTTCTGTACGTTCCATTCTCAAGAAAT---AGCA--
254 TTCAAGACGATTCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATT
* *
14402 -GCT-T---TTG---G-------G--AACAAGTTTTGGTCTTTGAATCAAAAACTTATTTATGTG
318 TGCTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA-TTACGTG
* * * *
14450 ATAATTG-TT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
382 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * ** * *
14494 AACTTTTACGAGTTCTTTTATTATTTCAGTTCAATAAAGTTTTCAAGACGATCCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* ** * * *
14559 CAATTTTTCGAACATTCCATGCTCGGGAAATCGTATCATTTAGTCTAAATAGTTTGTAATTTTGT
66 CAA-TTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * * * * * * *
14624 AAA-AAGGTTTTGTTGTTTCAATTAAAAAATTATTTACGTGAGAATTATTTCTCTCTTTGTTCTT
130 AAACAA-CTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAA-T-TGTCTCTCTTGGCTCTT
* * * * * * * * *
14688 GGATGAACTTTTGAACTTGCCAAACATTTACGAGTTCTTTCATAACTTCAGTTTCTTAAAGTATT
192 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATT
* * * * * *
14753 CAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCACT-TTTGGGAAATAGCAGCATTTG
256 CAAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCA-TGCTCGGGAAATCGCATCATTTG
* * * * * *
14817 GTCTAAATAGTTTGTCATTTTGGAAACAAGTTTTGGTCTTTGAATCAAAAACTTTTTTAAGTGAG
320 CTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC-TTATTACGTGAG
* * * *
14882 AATTG-TT-TCTCTTGGTTCTTGGACAAACTTCCGAACTCGTCT
384 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * *
14924 AACTTTTTCGAGTTCTTTTATAACTTCGATTCCTTAATGTATTCAAGATGATCCATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * * * *
14989 CAATTTTCTAAACATTTCATGCTTGGGAAATCATATCATTTAGTCTAAATTA-TTTGTCATTTTG
66 CAATTTTC-GAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAA-TAGTTTTTCATTTTG
* * * * * *
15053 TAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
129 TAAACAACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTG--TCTCTCTTGGCTCTT
** * *
15118 GGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATT
192 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATT
* * * *
15183 CTAGACGATCCATTCCTTTGAGCAATTTTT-GAACATTCCATTCTCGGGAAATCGCATCATTTAG
256 CAAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT-G
* * * * *
15247 -TCTAAATAGTTTTTCATTTTTTAGACAAGTTTTGGTCTTTAAAATT-AAAACTTATTTACGTGA
320 CTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT-GAATTAAAAACTTA-TTACGTGA
* * * **
15310 GAATTG-TT-TCTCTTGGCTGTTGGACGAACTTCCGAACTTTTCA
383 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * * * *
15353 AACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCCAGGCAATCCATTCCTTCAAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * * *
15417 CAATTTTTCGAACATTTCATACTCGGGAAAT-AGCATCATTTGGTATAAATAGTGTGTCATTTTG
66 CAA-TTTTCGAACATTCCATTCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTTTCATTTTG
* * * ** * * * *
15481 TAAACAACTTTTGGTCTTT-GAATTAAATTTTTATTTACCTGAGGATTGTTCTCCCTTGGTTCTT
129 TAAACAACTTTTGCTCTTTAAAATGAAA-ACTTATTTACGTGAGAATTG-TCTCTCTTGGCTCTT
* * * *
15545 GGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTACAACTTCGATTCCTTAAAGTATT
192 GGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGA-TCCTTACAGTATT
* * * * * ** * *
15610 CAAGACAATCCACTCCTTCGAGCAATTTTTCGAGCATTACATTTTCGGGATATCGCATCATTTGG
256 CAAGACGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGC
* * * * * * * * * *
15675 TATAAATAGTTAGTAATTTTATAGACAAGTTTTTGTTTTTGAATTAAAAGAACTTTTTTACATGA
321 TCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAA-AAC-TTATTACGTGA
* *
15740 GAATTGTTTCTCTCTTGGTTCTTGGATGAAC-T------T--TCG
383 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * * * *
15776 AACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAACGTATTCATGACAATCCACTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
* * * *
15841 CAATTTTTC-AGACATTCCA-TGTGGGGAAATCACATCATTTGG-ATAAATTGTTTGTT-ATTTT
66 CAA-TTTTCGA-ACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTT-TTCATTTT
* * * * * * * * ** *
15902 GTAAATAAATGTTTG-TATTTGAATTAAAAGAACTTATTTAAGTGAGAATTAT-T-T-TCAGTTC
128 GTAAACAACT-TTTGCTCTTTAAAAT-GAA-AACTTATTTACGTGAGAATTGTCTCTCTTGGCTC
* * * * * * * * *
15963 TT--------TT-TTAATTTGTCAAAATTTTACGAGTTCTTTTATAATTTCAGTTCCATAAAGCA
190 TTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTA
* * * * *
16019 TTCAAGACGATCCATTCCTTCGAGCAA-TTTTCAAAACATTCTATGCTCGAGAAATCGTATCATT
254 TTCAAGACGATTCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATT
* * * * * *
16083 TGGTCTAAA-AGTTTG------TG--AA-AGGTTTTGTTGTTTGAATTAAAAACTTTTTTACGTG
318 TGCTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAAC-TTATTACGTG
* * * * * *
16138 AGAATTATTTTTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCA
382 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * ** * *
16184 AACTTTTATGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGAAGCATTCCTTTGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
16249 CAATTTT
66 CAATTTT
16256 ACGTGAGAAT
Statistics
Matches: 4515, Mismatches: 767, Indels: 512
0.78 0.13 0.09
Matches are distributed among these distances:
384 2 0.00
385 20 0.00
386 109 0.02
387 5 0.00
390 1 0.00
391 2 0.00
392 3 0.00
394 2 0.00
395 1 0.00
399 42 0.01
400 5 0.00
401 48 0.01
402 124 0.03
403 15 0.00
404 2 0.00
405 3 0.00
406 9 0.00
407 23 0.01
408 325 0.07
409 43 0.01
410 19 0.00
411 225 0.05
412 18 0.00
413 98 0.02
414 121 0.03
415 293 0.06
416 31 0.01
417 152 0.03
418 6 0.00
419 1 0.00
420 9 0.00
421 4 0.00
422 30 0.01
423 139 0.03
424 174 0.04
425 12 0.00
426 209 0.05
427 517 0.11
428 462 0.10
429 296 0.07
430 428 0.09
431 17 0.00
432 85 0.02
433 365 0.08
434 20 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (427 bp):
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
CAATTTTCGAACATTCCATTCTCGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTA
AACAACTTTTGCTCTTTAAAATGAAAACTTATTTACGTGAGAATTGTCTCTCTTGGCTCTTGGAC
GAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTGGATCCTTACAGTATTCAAGA
CGATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCTAA
ATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTACGTGAGAATTGTT
TCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
Found at i:12565 original size:214 final size:213
Alignment explanation
Indices: 11573--12585 Score: 1137
Period size: 214 Copynumber: 4.7 Consensus size: 213
11563 TTCTTGGACG
* *
11573 AACTTTTACGAGTTCTTTCATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCATTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
11638 CAATTTTCCAAACGTTCCATGCTCGAGATATCGCATTATTTGGTCTAAATAGTTTTTCATTTTGT
65 CAATTTT-CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT
* *
11703 AAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
11768 GACAAACTTCCTAACTTGTCC
193 GACGAACTTCCTAACTTGTCA
* * * * * * * ** *
11789 AACTTTTACTAGTTCTTTTACAATTTCGATTCCATACAGTATTCAAGTCGATACATTATTTCGAC
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCCTTCGAG
* * * * * *
11854 CAATTTTCTAAACGTTTCATGCTCGGGAAATCGTATCATTTGGTCTAAAT-TTTTTTCATTTTGT
65 CAATTTTC-GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * *
11918 AAACAAGTTTTGGTCTTTGCATTAAAAACTTA-TTCCGTGAGAATTGTTTCTCTCTTGGTTCTTG
129 AAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
*
11982 GACGAACTTCCAAACTTGTCA
193 GACGAACTTCCTAACTTGTCA
*
12003 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTGTTCAAGACGATCCATTCCATT-GA
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCATTCC-TTCGA
* * * * * *
12067 GCAATTTTTGAACATTCCAATCTCTGGAAATCACATCACTTAGTCTAAATAGTTTTTCATTTTGT
64 GCAATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * * * *
12132 AAATAAGTTTTGCTCTTTAAAATGAAAACTTATTTAGGTGAGAATTG-TT-TCTCTTGGCTCTTG
129 AAACAACTTTTGGTCTTT-GAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
12195 GATGAACTT-TTGAACTTTTCA
193 GACGAACTTCCT-AACTTGTCA
* * *
12216 AACTTTTACGAGTTCTTTTATAACTT-GGATCCTTACAGTATTTAAGACGATTCATTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-AGTATTCAAGACGATCCATTCCTTCGAG
* * * * *
12280 CAATTTTTTGAACATTCCATTCTCGGCAAATCGCATCATTTGCTCTAAATTGTTTGTCATTTTGT
65 CAA-TTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGT
* * * * *
12345 AAACAACTTTTGGTCTTTGAATTAAGCACTTACTTACGCGAGGATTG-TTCTCCCTTGGTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
12409 GATGAACTTCCTAACTAGTCA
193 GACGAACTTCCTAACTTGTCA
** * * *
12430 ATGTTTTACGAGTTCTTTTACAACTTCGGTTCCTTGAAGTATTCAAGACAATCCACTCCTTCGAG
1 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAGTATTCAAGACGATCCATTCCTTCGAG
* * * *
12495 AAAGTTTTCGAACATTCCATTTTCGGGAAATCGCAACATTTGGTATAAATAGTTTGTT-A-TTTG
65 CAA-TTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT-TTCATTTTG
* *
12558 TAAACAACTTTTTGTGTTTGAATTAAAA
128 TAAACAACTTTTGGTCTTTGAATTAAAA
12586 GTTCTTTTAA
Statistics
Matches: 670, Mismatches: 109, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
211 3 0.00
212 37 0.06
213 172 0.26
214 221 0.33
215 136 0.20
216 101 0.15
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (213 bp):
AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAGTATTCAAGACGATCCATTCCTTCGAGC
AATTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAA
ACAACTTTTGGTCTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTCCTAACTTGTCA
Found at i:14056 original size:216 final size:212
Alignment explanation
Indices: 13656--16255 Score: 2159
Period size: 216 Copynumber: 12.3 Consensus size: 212
13646 TTGGACGAAG
* * * * * *
13656 TTTTATGAGTTCTTTCATAATTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCGTTCGAGCTA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * * ** * *
13721 TTTTTTGAACATTCCA-AGTTCGTGATATCGTGTCATTTGGTCTAAATTGTTT-TTCATTTTATA
66 TTTTTTGAACATTTCATA-CTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTT-ATTTTGT-
* * *
13784 AAAAACTTTTGGTCTTTGACTTAAAAACTTATTTACGTGAGAATTGTTACTCTCTCGGTTCTTGG
128 AAAAA-TTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTT--TCTCTCGGTTCTTGG
* *
13849 ACGAACTTCCGAACTTGTCAATC
190 ACGAACTTTCGAACTTGTCAAAC
* * *
13872 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAACGTATTCAAGACGATCCACTCCTTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* *
13937 TTTTTTGAACATTTCATACTCGGGAAATCACATCATTTGTTCTAAATAGTTTGTTATTTTGTATA
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTA-A
*
14002 CAAATTTTTGTGTTTGAATTAAAAGAACTTATTTACCTGAGAATTGTTTCTCTCGTTGTTCTT-G
130 -AAATTTTTGTGTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTCG--GTTCTTGG
** * * ** *
14066 TTGAACTTTTGAAATACTCAAAA
190 ACGAACTTTCGAACTTGTCAAAC
* * *
14089 TTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATTCAAGACGATCCACTTCTTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * *
14154 TTTTTCGAACA-TTCGATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTAATTTTGTAA
66 TTTTTTGAACATTTC-ATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAA
* * * *
14218 AATAGTTTTGTTGTTTAAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
130 AA-ATTTTTG-TGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC--GGTTCTTGGA
14283 CGAACTTTCGAACTTGTCAAAC
191 CGAACTTTCGAACTTGTCAAAC
* * * * *
14305 TTTTACGAGTTCTTTCATAAGTTCGATTCCTTAAATTATTCAAGACTATTCACACCTTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * * * ** * * * *
14370 TTTTCTGTACGTTCCATTCTCAAGAAATAGCAGCTTTTGG--GAACA-A----G---TTTTG---
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAA-ATAGTTTGTTATTTTGTAA
* * * * *
14422 --------GTCTTTGAATCAAAAACTTATTTATGTGATAATTGTTTCTCTTGGTTCTTGGACGAA
130 AAATTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGACGAA
14479 CTTTCGAACTTGTCAAAC
195 CTTTCGAACTTGTCAAAC
* * * ** * *
14497 TTTTACGAGTTCTTTTATTATTTC-AGTTCAATAAAGTTTTCAAGACGATCCATTCCTTCGAGCA
1 TTTTACGAGTTCTTTCATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCA
* * * * * *
14561 ATTTTTCGAACATTCCATGCTCGGGAAATCGTATCATTTAGTCTAAATAGTTTGTAATTTTGTAA
65 ATTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAA
* * * * *
14626 AAAGGTTTTGTTGTTTCAATTAAAAAATTATTTACGTGAGAATTATTTCTCTCTTTGTTCTTGGA
130 AAA-TTTTTG-TGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC--GGTTCTTGGA
* * *
14691 TGAACTTTTGAACTTGCCAAAC
191 CGAACTTTCGAACTTGTCAAAC
* * *
14713 ATTTACGAGTTCTTTCATAACTTC-AGTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCA
1 TTTTACGAGTTCTTTCATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCA
* * * * * * *
14777 ATTTTTTGAACATTCCACT-TTTGGGAAATAGCAGCATTTGGTCTAAATAGTTTGTCATTTTGGA
65 ATTTTTTGAACATTTCA-TACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTA
* * * * * *
14841 AACAAGTTTTGGTCTTTGAATCAAAAACTTTTTTAAGTGAGAATTGTTTCTCTTGGTTCTTGGAC
129 AA-AA-TTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGAC
* * * *
14906 AAACTTCCGAACTCGTCTAAC
192 GAACTTTCGAACTTGTCAAAC
* * * * * *
14927 TTTTTCGAGTTCTTTTATAACTTCGATTCCTTAATGTATTCAAGATGATCCATTCATTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * * ** * *
14992 TTTTCTAAACATTTCATGCTTGGGAAATCATATCATTTAGTCTAAATTA-TTTGTCATTTTGTAA
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAA-TAGTTTGTTATTTTGTAA
* *
15056 ACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
130 A-AA-TTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC--GGTTCTTGGA
* *
15121 CGAACTTCCAAACTTGTCAAAC
191 CGAACTTTCGAACTTGTCAAAC
* * * * *
15143 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCTAGACGATCCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * *
15208 -TTTTTGAACATTCCATTCTCGGGAAATCGCATCATTTAGTCTAAATAGTTT-TTCATTTTTTAG
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTT-ATTTTGTA-
* * * * * * *
15271 ACAAGTTTTGGTCTTTAAAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTTGGCTGTTGGAC
129 A-AAATTTTTGTGTTT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGAC
* *
15335 GAACTTCCGAACTTTTCAAAC
192 GAACTTTCGAACTTGTCAAAC
* * * * * * * *
15356 TTTTACGAGTTCTTTTATAACTT-GGTTCCTTACAGTATTCCAGGCAATCCATTCCTTCAAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * * *
15420 TTTTTCGAACATTTCATACTCGGGAAATAGCATCATTTGGTATAAATAGTGTGTCATTTTGTAAA
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA
* * *** * * * *
15485 CAACTTTTGGTCTTTGAATTAAATTTTTATTTACCTGAGGATTGTTCTCCCTTGGTTCTTGGACG
131 -AA-TTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTCGGTTCTTGGACG
*
15550 AACTTCCGAACTTGTCAAAC
193 AACTTTCGAACTTGTCAAAC
* * *
15570 TTTTACGAGTTCTTTTACAACTTCGATTCCTTAAAGTATTCAAGACAATCCACTCCTTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * ** * * * * *
15635 TTTTTCGAGCATTACATTTTCGGGATATCGCATCATTTGGTATAAATAGTTAGTAATTTTATAGA
66 TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTA-A
* * * *
15700 CAAGTTTTTGTTTTTGAATTAAAAGAACTTTTTTACATGAGAATTGTTTCTCTCTTGGTTCTT-G
130 -AAATTTTTGTGTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTC--GGTTCTTGG
*
15764 --G-A---T-GAACTT-TCGAAC
190 ACGAACTTTCGAACTTGTCAAAC
* * * * * * * *
15779 TTTTACGAGTTATTTTATAACTTTGGTTCCTTAACGTATTCATGACAATCCACTCATTCGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
* * * * * * *
15844 -TTTTTCAGACATTCCAT-GTGGGGAAATCACATCATTTGG-ATAAATTGTTTGTTATTTTGTAA
66 TTTTTTGA-ACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGT-A
* * * * *
15906 ATAAATGTTTGTATTTGAATTAAAAGAACTTATTTAAGTGAGAATT-ATT-T-TCAGTTCTT---
129 A-AAATTTTTGTGTTTGAATT-AAA-AACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGA
* * *
15965 -----TTT-TAATTTGTCAAAA
191 CGAACTTTCGAACTTGTCAAAC
* * * * *
15981 TTTTACGAGTTCTTTTATAATTTC-AGTTCCATAAAGCATTCAAGACGATCCATTCCTTCGAGCA
1 TTTTACGAGTTCTTTCATAACTTCGA-TTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCA
*** * * *
16045 ATTTTCAAAACA-TTCTATGCTCGAGAAATCGTATCATTTGGTCTAAA-AGTTTG------TG--
65 ATTTTTTGAACATTTC-ATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTA
** * * * *
16100 AAAGGTTTTGTTGTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTTTCTCTTGGTTCTTAGA
129 AAAATTTTTG-TGTTTGAATTAAAAACTTATTTACGTGAGAA-T-TGTTTCTCTCGGTTCTTGGA
16165 CGAACTTTCGAACTTGTCAAAC
191 CGAACTTTCGAACTTGTCAAAC
* * * * ** * *
16187 TTTTATGAGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGAAGCATTCCTTTGAGCAA
1 TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
16252 TTTT
66 TTTT
16256 ACGTGAGAAT
Statistics
Matches: 1962, Mismatches: 329, Indels: 196
0.79 0.13 0.08
Matches are distributed among these distances:
191 1 0.00
192 127 0.06
193 11 0.01
194 49 0.02
195 3 0.00
196 1 0.00
197 9 0.00
198 1 0.00
201 12 0.01
202 68 0.03
203 26 0.01
204 6 0.00
205 4 0.00
206 71 0.04
207 61 0.03
208 24 0.01
209 70 0.04
210 7 0.00
211 1 0.00
212 41 0.02
213 135 0.07
214 276 0.14
215 232 0.12
216 514 0.26
217 177 0.09
218 35 0.02
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (212 bp):
TTTTACGAGTTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGACGATCCACTCCTTCGAGCAA
TTTTTTGAACATTTCATACTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAA
AATTTTTGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGACGAAC
TTTCGAACTTGTCAAAC
Found at i:16348 original size:123 final size:123
Alignment explanation
Indices: 16129--16378 Score: 392
Period size: 123 Copynumber: 2.0 Consensus size: 123
16119 TTAAAAACTT
* * * *
16129 TTTTACGTGAGAATTATTTTTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAACTTTTATG
1 TTTTACGTGAGAATTATTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACTTTTACG
* * * *
16194 AGTTCTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGAAGCATTCCTTTGAGCAA
66 AGTTCTTTTATAACTCCGATTCCTTAAAGTATTCAAGACGAACCATTCCTTTGAGCAA
* *
16252 TTTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACG
1 TTTTACGTGAGAATTATTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACTTTTACG
* *
16317 AGTTCTTTTATAACTCCGATTCCTTAAAGTATTCAAGACGATCCATTCTTTTGAGCAA
66 AGTTCTTTTATAACTCCGATTCCTTAAAGTATTCAAGACGAACCATTCCTTTGAGCAA
16375 TTTT
1 TTTT
16379 TGAACATTCC
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
123 115 1.00
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (123 bp):
TTTTACGTGAGAATTATTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTCCGATTCCTTAAAGTATTCAAGACGAACCATTCCTTTGAGCAA
Found at i:17058 original size:216 final size:215
Alignment explanation
Indices: 16253--17306 Score: 1290
Period size: 214 Copynumber: 4.9 Consensus size: 215
16243 TTTGAGCAAT
* *
16253 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT-TTCAAACTTTTACG
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTTTTACG
* * * *
16317 AGTTCTTTTATAACTCCGATTCCTTAAAGTATTCAAGACGATCCATTCTTTTGAGCAATTTT-TG
65 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTG
* * * *
16381 AACATTCCATTCTCGGGAAATCGCATAATTTAGTCTTAATAGTTTTTCATTTTGTAAACAAGTTT
130 AACATTCCATGCTC-GGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
16446 TGGTCTTTAAAATGAAAACTTA
194 TGGTCTTTAAATTAAAAACTTA
* * *
16468 CTTACGTGAGAATTG-TT-TCTCTTGGTTGTTGGACGAACTTTCGAACTT-TTCAAACTTTTACG
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTT-AAACTTTTACG
* * * * *
16530 TGTTCTTTTATAACTTAG-TTCCTTATAGTATTCAAGACAATTCATTCCTTCGAGCAATTTTCCG
65 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTG
* * *
16594 AACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAGTTTATCATTTTGTAAACAACTTT
130 AACATTCCATGCTCG-GAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
16659 TGTTCTTTGAATTAAATACTTA
194 TGGTCTTTAAATTAAAAACTTA
* * * * * *
16681 TTTATGTGAGTATTGTTTC-CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTATGT
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTTTTACGA
* * * * *
16745 GTTCTTTTATAATTTC-AGTTCCATAAAGTATTAAAGAC-AATCTATTCCTTCGAGCAATTTTAT
66 GTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGACGATTC-ATTCCTTCGAGCAATTTTCT
* * * *
16808 GAATATTTCATGCTCGGGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAGGT
129 GAACATTCCATGCTC-GGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GT
* * *
16872 TTTGTTGTTTGAATTAAAAACTTA
192 TTTGGTCTTTAAATTAAAAACTTA
* * *
16896 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAACTTTTATGA
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTTTTACGA
* * *
16961 GTTCTTTCATAACTTCGATTCCTTAAAGTATTTAAGACGATTCATTCCTTCGAGCAATTTTTTGA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTGA
* * * * * *
17026 ACATTACATTCTCAGGAAATCACATAATTTGGTCTAAATAGATTGCCATCTTGTAAACAAGTTTT
131 ACATTCCATGCTC-GGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
*
17091 GGTCTTTAAATCAAAAACTTA
195 GGTCTTTAAATTAAAAACTTA
* * *
17112 TTTACGTGAGAATTG-TT-TCTCTTAGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGA
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTTTTACGA
* * * * * *
17175 GTTCTTTTATAACTTTGATTCCTTATAGTATTCAAGGCGATACATTCCTTCGAGCAACTTTCTAA
66 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTGA
* * * *
17240 ACATTCTATGCTCGGCAAATCGCATCATTT-TTCTAAATTGTTTGTCATTTTGTAAACAAG-TTT
131 ACATTCCATGCTCGG-AAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
17303 GGTC
195 GGTC
17307 GATGCAAGAA
Statistics
Matches: 724, Mismatches: 100, Indels: 33
0.84 0.12 0.04
Matches are distributed among these distances:
212 46 0.06
213 171 0.24
214 180 0.25
215 143 0.20
216 178 0.25
217 6 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (215 bp):
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAACTTTTACGA
GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGCAATTTTCTGA
ACATTCCATGCTCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
GTCTTTAAATTAAAAACTTA
Found at i:17486 original size:24 final size:24
Alignment explanation
Indices: 17459--17504 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
17449 ATTAACTTTA
*
17459 AGAA-GTAAATATGTCAGCGCAATT
1 AGAATGTAAA-ATGTCAGAGCAATT
*
17483 AGAATGTCAAATGTCAGAGCAA
1 AGAATGTAAAATGTCAGAGCAA
17505 ATTATAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (24 bp):
AGAATGTAAAATGTCAGAGCAATT
Found at i:19065 original size:17 final size:18
Alignment explanation
Indices: 19032--19077 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
19022 TATAGCAATA
*
19032 TATTTTT-TCTGCTTTTC
1 TATTTTTCTTTGCTTTTC
19049 TATTTTTCTTTGC-TTTC
1 TATTTTTCTTTGCTTTTC
*
19066 TTTTTCTTCTTT
1 TATTT-TTCTTT
19078 TTTTTATACG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.04, C:0.17, G:0.04, T:0.74
Consensus pattern (18 bp):
TATTTTTCTTTGCTTTTC
Found at i:19849 original size:16 final size:16
Alignment explanation
Indices: 19815--19847 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
19805 CTTTTTGTGC
*
19815 TTCTTTTTCTTATTCT
1 TTCTCTTTCTTATTCT
19831 TTCTCTTTCTT-TTCT
1 TTCTCTTTCTTATTCT
19846 TT
1 TT
19848 TCCTTGGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTCTCTTTCTTATTCT
Found at i:21465 original size:20 final size:20
Alignment explanation
Indices: 21433--21478 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
21423 GCATGGTTTA
*
21433 AATTAAGTGT-AAATAGATTT
1 AATTAAGTGTAAAAAAGA-TT
21453 AATTAAGAT-TAAAAAAGATT
1 AATTAAG-TGTAAAAAAGATT
21473 AATTAA
1 AATTAA
21479 AGCTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (20 bp):
AATTAAGTGTAAAAAAGATT
Found at i:38489 original size:18 final size:19
Alignment explanation
Indices: 38460--38495 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
38450 AAGTCAATGA
38460 TCAACGGTCAATGATCAAG
1 TCAACGGTCAATGATCAAG
*
38479 TCAAC-GTCAATGGTCAA
1 TCAACGGTCAATGATCAA
38496 CAGTCAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (19 bp):
TCAACGGTCAATGATCAAG
Found at i:38503 original size:14 final size:14
Alignment explanation
Indices: 38478--38532 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 14
38468 CAATGATCAA
38478 GTCAAC-GTCAATG
1 GTCAACAGTCAATG
38491 GTCAACAGTCAAT-
1 GTCAACAGTCAATG
** *
38504 -TCAATGGTAAATG
1 GTCAACAGTCAATG
*
38517 GTCAACAATCAATG
1 GTCAACAGTCAATG
38531 GT
1 GT
38533 TCAATTCGAT
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
12 9 0.28
13 6 0.19
14 17 0.53
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.25
Consensus pattern (14 bp):
GTCAACAGTCAATG
Found at i:42777 original size:16 final size:17
Alignment explanation
Indices: 42756--42787 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
42746 CTTGTTTAGA
42756 TTAATT-AGAGTTCTAG
1 TTAATTAAGAGTTCTAG
42772 TTAATTAAGAGTTCTA
1 TTAATTAAGAGTTCTA
42788 TTTAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.44
Consensus pattern (17 bp):
TTAATTAAGAGTTCTAG
Found at i:46335 original size:17 final size:17
Alignment explanation
Indices: 46309--46343 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
46299 ATCATTTTAA
46309 CTCTTCATCTAATTTTT
1 CTCTTCATCTAATTTTT
*
46326 CTCTTTATCTAATTTTT
1 CTCTTCATCTAATTTTT
46343 C
1 C
46344 ATCATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.23, G:0.00, T:0.60
Consensus pattern (17 bp):
CTCTTCATCTAATTTTT
Found at i:53138 original size:26 final size:26
Alignment explanation
Indices: 53094--53144 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
53084 TTTGAGTCAG
** * *
53094 TTATTCTTCTAGTAGATATATTAGAA
1 TTATTCTTCTACCAAATATAGTAGAA
53120 TTATTCTTCTACCAAATATAGTAGA
1 TTATTCTTCTACCAAATATAGTAGA
53145 GTTGTATGAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (26 bp):
TTATTCTTCTACCAAATATAGTAGAA
Found at i:55331 original size:14 final size:14
Alignment explanation
Indices: 55312--55339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
55302 TATTCCTAAG
55312 TTATATTTATTTAT
1 TTATATTTATTTAT
55326 TTATATTTATTTAT
1 TTATATTTATTTAT
55340 ATTAATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATATTTATTTAT
Found at i:60390 original size:24 final size:22
Alignment explanation
Indices: 60362--60436 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 22
60352 TACCTAGGCT
60362 TTTTTTCTTTCTTT-CGTGCTTCC
1 TTTTTTCTTTCTTTGC-TGCTT-C
* *
60385 TCTTTTGCTTTGTTTGCTGCTTC
1 T-TTTTTCTTTCTTTGCTGCTTC
*
60408 TTTTTTC-TTCTGTT-CAGCTTC
1 TTTTTTCTTTCT-TTGCTGCTTC
60429 TTTTTTCT
1 TTTTTTCT
60437 CCTTTTCTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 16 0.37
22 7 0.16
23 3 0.07
24 16 0.37
25 1 0.02
ACGTcount: A:0.01, C:0.23, G:0.11, T:0.65
Consensus pattern (22 bp):
TTTTTTCTTTCTTTGCTGCTTC
Found at i:68364 original size:178 final size:181
Alignment explanation
Indices: 68158--68524 Score: 548
Period size: 178 Copynumber: 2.0 Consensus size: 181
68148 ATTTTTTATT
* * **
68158 AAAAATTTGTACGGTGAGATTTGAATTTG-GAC-ATATTGTTGGGTTAGAAAAATTTTTTAATTT
1 AAAAATGTGTACGATGAGATTTGAATTTGAG-CTA-ATTGTTGGGTTAGAAAAAAATTTTAATTT
*
68221 ACCACTCAATTAAAGTTTTATTTTAATATTTTGGTAC-A-TATTTATTTATTTATTTTCATTTAT
64 ACCACTCAATTAAAGTTTTATTTTAATATTTTGATACAATTATTTATTTATTTATTTTCATTTAT
*
68284 TAATTATTCTATTAAATTGGTATCATTCTCAATTAAATCA-CTAATTT-ATTAA
129 TAATTATTCTATTAAATTGGTATCACTCTCAATTAAATCATC-AATTTAATTAA
68336 AAAAATGTGTACGATGAGATTTGAATTTGAGCTAATTGTTGGGTTAGAAAAAAATTTTAATTTAC
1 AAAAATGTGTACGATGAGATTTGAATTTGAGCTAATTGTTGGGTTAGAAAAAAATTTTAATTTAC
**
68401 CTTTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTATTTTCATTTAT
66 CACTCAATTAAAGTTTTATTTTAATATTTTGATACA-A-TTATTTATTTATTTATTTTCATTTAT
* **
68466 TAATTGTTCTATTAAATTGGTATCACTCTCAATTAGGTCATCAATTTAATTAA
129 TAATTATTCTATTAAATTGGTATCACTCTCAATTAAATCATCAATTTAATTAA
68519 AAAAAT
1 AAAAAT
68525 TATGAAAATG
Statistics
Matches: 170, Mismatches: 11, Indels: 11
0.89 0.06 0.06
Matches are distributed among these distances:
178 89 0.52
179 2 0.01
180 1 0.01
182 66 0.39
183 12 0.07
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (181 bp):
AAAAATGTGTACGATGAGATTTGAATTTGAGCTAATTGTTGGGTTAGAAAAAAATTTTAATTTAC
CACTCAATTAAAGTTTTATTTTAATATTTTGATACAATTATTTATTTATTTATTTTCATTTATTA
ATTATTCTATTAAATTGGTATCACTCTCAATTAAATCATCAATTTAATTAA
Found at i:68577 original size:178 final size:175
Alignment explanation
Indices: 68214--68556 Score: 402
Period size: 182 Copynumber: 1.9 Consensus size: 175
68204 GAAAAATTTT
*
68214 TTAATTTACCACTCAATTAAAGTTTTATTTTAATATTTTGGTACATATTTATTTATTTATTTTCA
1 TTAATTTACCACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTTCA
* *
68279 TTTATTAATTATTCTATTAAATTGGTATCATTCTCAATTAAATCACTAATTTATTAAAAAAATGT
66 TTTATTAATTATTCTATTAAATTGGTATCACTCTCAATTAAATCACTAATTTATTAAAAAAATAT
** ** * * ** *
68344 GTACGATGAGATTTGAATTTGAGCTAATTGTTGGGTTAGAAAAAAA
131 GTAAAATGAGATTCCAAATTAAAATAATTGTT-GATTAGAAAAAAA
**
68390 TTTTAATTTACCTTTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTA
1 --TTAATTTACCACTCAATTAAAGTTTTATTTTAATATTTTGATAC--A--TATTTATTTATTTA
* **
68455 TTTTCATTTATTAATTGTTCTATTAAATTGGTATCACTCTCAATTAGGTCA-TCAATTTAATTAA
60 TTTTCATTTATTAATTATTCTATTAAATTGGTATCACTCTCAATTAAATCACT-AATTT-ATTAA
**
68519 AAAAATTATG-AAAATGCTATTCCATAATTAAAATAATT
123 AAAAA-TATGTAAAATGAGATTCCA-AATTAAAATAATT
68557 TATATTATTC
Statistics
Matches: 139, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
178 41 0.29
180 1 0.01
181 1 0.01
182 66 0.47
183 18 0.13
184 12 0.09
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (175 bp):
TTAATTTACCACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTTCA
TTTATTAATTATTCTATTAAATTGGTATCACTCTCAATTAAATCACTAATTTATTAAAAAAATAT
GTAAAATGAGATTCCAAATTAAAATAATTGTTGATTAGAAAAAAA
Found at i:68874 original size:240 final size:242
Alignment explanation
Indices: 68336--69419 Score: 1347
Period size: 240 Copynumber: 4.4 Consensus size: 242
68326 AATTTATTAA
**
68336 AAAAATGTGTA-CGATGAGATTTGAATTT-GAGCTAATTGTTGGGTTAGAAAAAAATTTTAATTT
1 AAAAATGTGTACCG-TGAGATTTGAATTTGGA-CTAATTGTTGGGTTAG-AAAATTTTTTAATTT
* ** *
68399 ACCTTTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTATTTTCATTT
63 ATCACTCAATTAAAGTTTTATTTTAATATTTTGATAC--A--TATTT-TTT-TTT-TGTTCATTT
68464 ATTAATTGTTCTATTAAATTGGTATCACTCTCAATTAGGTCATCAATTTAATTAAAAAAATTATG
121 ATTAATTGTTCTATTAAATTGGTATCACTCTC-A--AGGTCATCAATTTAATTAAAAAAATTATG
** *
68529 AAAATGCTATTCCATAATTAAAATAATTTATATTATTCAAA-ATAATTTAATTTTTT-TT
183 AAAATATTATTTCATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTTTATT
* * ** * * *
68587 -AAAATGTGTACGGTGAGATTTAAATTTGGGTTAATTGTTGGGTTAGAAATTTTTTTACTTTACC
1 AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAATTTTTTAATTTATC
* *
68651 ACTCAATTAATTAATTTT-TTTTAATATTTTGGTACATA-TTTTTTTTTGTTCATTTATTAATTG
66 ACTCAATTAA--AGTTTTATTTTAATATTTTGATACATATTTTTTTTTTGTTCATTTATTAATTG
* *
68714 TTCTATTAAATTGTTATCACTCTC-GGGTCAGT-AATTTAATT-AAAAAATTATGAAAATATTAT
129 TTCTATTAAATTGGTATCACTCTCAAGGTCA-TCAATTTAATTAAAAAAATTATGAAAATATTAT
* *
68776 TTTATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTATATT
193 TTCATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTTTATT
*
68826 AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAAATTTTTAATTTATC
1 AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAATTTTTTAATTTATC
*
68891 ACTCAATTAAAGTTTTATTTTAATATTTTGGTACATATATTTTTTATTTTTGTTCATTTATTAAT
66 ACTCAATTAAAGTTTTATTTTAATATTTTGATAC--ATA-TTTTT-TTTTTGTTCATTTATTAAT
* * * *
68956 TGTTCTATTAAATTGGTATCATTCTC-AGGTCACCAATTTAACTTAAAAAAATTATAAAAATATC
127 TGTTCTATTAAATTGGTATCACTCTCAAGGTCATCAATTTAA-TTAAAAAAATTATGAAAATATT
69020 ATTTCATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTTTTATT
191 ATTTCATAATTAAAATAATTTATATTATTCAAAGATAATTTAA-TTTTTTATT
* * * * *
69073 AAAAATGTGTACCATGAGATTTGAATTTAGATTAATTGTTGGATTAGAAAATTTTTTTATTTTAT
1 AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAA-TTTTTTAATTTAT
* * *
69138 CACTCAATTGAAGTTTTATTTTAATATTTTGATGC--A--TTTTTTTTGTTCATTTATTAATTAT
65 CACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTTTTTTTTGTTCATTTATTAATTGT
* * *
69199 TCTATTAAATTGGTATTACTCTCAATTAGTTCATCAATTTAATTAGAAAAATTAT-AAAAT-TTC
130 TCTATTAAATTGGTATCACTCTC-A--AGGTCATCAATTTAATTAAAAAAATTATGAAAATATT-
* *
69262 ATTTCATAATTAAAATAATCTATATTATTCAAACATAATTTAAATTTTTTATT
191 ATTTCATAATTAAAATAATTTATATTATTCAAAGATAATTT-AATTTTTTATT
* * *
69315 AAAAAAATATGTGTACAGTGAGATTTAAATTTGGACCAATTGTTGGGTTAGAAAATTTTTTAATT
1 ---AAAA-ATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAATTTTTTAATT
* *
69380 TATTACTCAATTAAAGTTTTATTTTAATGTTTTGATACAT
62 TATCACTCAATTAAAGTTTTATTTTAATATTTTGATACAT
69420 TTCAATTTTT
Statistics
Matches: 735, Mismatches: 67, Indels: 66
0.85 0.08 0.08
Matches are distributed among these distances:
237 48 0.07
238 33 0.04
239 20 0.03
240 108 0.15
241 7 0.01
242 92 0.13
243 21 0.03
244 72 0.10
245 51 0.07
246 101 0.14
247 55 0.07
248 44 0.06
249 22 0.03
250 54 0.07
251 7 0.01
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.48
Consensus pattern (242 bp):
AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAATTTTTTAATTTATC
ACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTTTTTTTTGTTCATTTATTAATTGTT
CTATTAAATTGGTATCACTCTCAAGGTCATCAATTTAATTAAAAAAATTATGAAAATATTATTTC
ATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTTTATT
Found at i:68952 original size:21 final size:22
Alignment explanation
Indices: 68904--68952 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
68894 CAATTAAAGT
68904 TTTATTTTAATATTTTGGTACA
1 TTTATTTTAATATTTTGGTACA
* * * *
68926 TATATTTT-TTATTTTTGTTCA
1 TTTATTTTAATATTTTGGTACA
68947 TTTATT
1 TTTATT
68953 AATTGTTCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTATTTTAATATTTTGGTACA
Found at i:69288 original size:488 final size:487
Alignment explanation
Indices: 68330--69419 Score: 1485
Period size: 493 Copynumber: 2.2 Consensus size: 487
68320 ATCACTAATT
*
68330 TATTAAAAAAATGTGTA-CGATGAGATTTGAATTT-GAGCTAATTGTTGGGTTAGAAAAAAATTT
1 TATT-AAAAAATGTGTACCG-TGAGATTTGAATTTGGA-CTAATTGTTGGGTTAG-AAAAATTTT
* **
68393 TAATTTACCTTTCAATTAAAGTTTTATTTTAATATTTTGATACATATTTATTTATTTATTTATTT
62 TAATTTATCACTCAATTAAAGTTTTATTTTAATATTTTGATACATA-TTATTTATTTATTTATTT
* *
68458 TCATTTATTAATTGTTCTATTAAATTGGTATCACTCTCAATTAGGTCATCAATTTAATTAAAAAA
126 TCATTTATTAATTGTTCTATTAAATTGGTATCACTCTC-ATCAGGTCACCAATTTAATTAAAAAA
*
68523 ATTATGAAAATGCTATTCCATAATTAAAATAATTTATATTATTCAAAATAATTTAATTTTTTTTA
190 ATTATAAAAATGCTATTCCATAATTAAAATAATTTATATTATTCAAAATAATTTAATTTTTTTTA
** * * *
68588 AAATGTGTACGGTGAGATTTAAATTTGGGTTAATTGTTGGGTTAGAAATTTTTTTACTTTACCAC
255 AAATGTGTACCATGAGATTTAAATTTAGATTAATTGTTGGATTAGAAATTTTTTTACTTTACCAC
* * * *
68653 TCAATTAATTAATTTTTTTTAATATTTTGGTACATATTTTTTTTTGTTCATTTATTAATTGTTCT
320 TCAATTAAGT-ATTTATTTTAATATTTTGATACA-ATTTTTTTTTGTTCATTTATTAATTATTCT
* * *
68718 ATTAAATTGTTATCACTCTCGGGTCAGTAATTTAATTAAAAAATTATGAAAATATTATTTTATAA
383 ATTAAATTGGTATCACTCTCAGGTCAGTAATTTAATTAAAAAATTATGAAAATATTATTTCATAA
* *
68783 TTAAAATAATTTATATTATTCAAAGATAATTT-AATTTTA
448 TTAAAATAATCTATATTATTCAAACATAATTTAAATTTTA
68822 TATT-AAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAAATTTTTAAT
1 TATTAAAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAAATTTTTAAT
*
68886 TTATCACTCAATTAAAGTTTTATTTTAATATTTTGGTACATA-TATTT-TTTATTT-TTGTTCAT
66 TTATCACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTATTTATTTATTTATT-TTCAT
68948 TTATTAATTGTTCTATTAAATTGGTATCA-T-TC-TCAGGTCACCAATTTAACTTAAAAAAATTA
130 TTATTAATTGTTCTATTAAATTGGTATCACTCTCATCAGGTCACCAATTTAA-TTAAAAAAATTA
* *
69010 TAAAAAT-ATCATTTCATAATTAAAATAATTTATATTATTCAAAGATAATTTAATTTTTTTATTA
194 TAAAAATGCT-ATTCCATAATTAAAATAATTTATATTATTCAAA-ATAATTTAA-TTTTTT-TT-
* * *
69074 AAAATGTGTACCATGAGATTTGAATTTAGATTAATTGTTGGATTAGAAAATTTTTTTATTTTATC
254 AAAATGTGTACCATGAGATTTAAATTTAGATTAATTGTTGGATTAG-AAATTTTTTTACTTTACC
*
69139 ACTCAATTGAAGT-TTTATTTTAATATTTTGATGC-A-TTTTTTTTGTTCATTTATTAATTATTC
318 ACTCAATT-AAGTATTTATTTTAATATTTTGATACAATTTTTTTTTGTTCATTTATTAATTATTC
* *
69201 TATTAAATTGGTATTACTCTCAATTAGTTCA-TCAATTTAATTAGAAAAATTAT-AAAAT-TTCA
382 TATTAAATTGGTATCACTCTC----AGGTCAGT-AATTTAATTA-AAAAATTATGAAAATATT-A
*
69263 TTTCATAATTAAAATAATCTATATTATTCAAACATAATTTAAATTTTT
440 TTTCATAATTAAAATAATCTATATTATTCAAACATAATTTAAATTTTA
* * * *
69311 TATTAAAAAAATATGTGTACAGTGAGATTTAAATTTGGACCAATTGTTGGGTTAGAAAATTTTTT
1 TATT--AAAAA-ATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAAATTTTT
* *
69376 AATTTATTACTCAATTAAAGTTTTATTTTAATGTTTTGATACAT
63 AATTTATCACTCAATTAAAGTTTTATTTTAATATTTTGATACAT
69420 TTCAATTTTT
Statistics
Matches: 537, Mismatches: 38, Indels: 45
0.87 0.06 0.07
Matches are distributed among these distances:
482 16 0.03
483 50 0.09
484 56 0.10
485 10 0.02
486 43 0.08
487 66 0.12
488 81 0.15
489 72 0.13
490 41 0.08
491 4 0.01
492 8 0.01
493 90 0.17
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.48
Consensus pattern (487 bp):
TATTAAAAAATGTGTACCGTGAGATTTGAATTTGGACTAATTGTTGGGTTAGAAAAATTTTTAAT
TTATCACTCAATTAAAGTTTTATTTTAATATTTTGATACATATTATTTATTTATTTATTTTCATT
TATTAATTGTTCTATTAAATTGGTATCACTCTCATCAGGTCACCAATTTAATTAAAAAAATTATA
AAAATGCTATTCCATAATTAAAATAATTTATATTATTCAAAATAATTTAATTTTTTTTAAAATGT
GTACCATGAGATTTAAATTTAGATTAATTGTTGGATTAGAAATTTTTTTACTTTACCACTCAATT
AAGTATTTATTTTAATATTTTGATACAATTTTTTTTTGTTCATTTATTAATTATTCTATTAAATT
GGTATCACTCTCAGGTCAGTAATTTAATTAAAAAATTATGAAAATATTATTTCATAATTAAAATA
ATCTATATTATTCAAACATAATTTAAATTTTA
Found at i:72744 original size:57 final size:57
Alignment explanation
Indices: 72664--72778 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
72654 ATCAACCATA
72664 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
1 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
*
72721 AAAGTTTTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
1 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
72778 A
1 A
72779 GAGATTTGTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (57 bp):
AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
Found at i:73086 original size:57 final size:57
Alignment explanation
Indices: 73006--73120 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
72996 ATCAACCATA
73006 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
1 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
*
73063 AAAGTTTTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
1 AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
73120 A
1 A
73121 GAGATTTGTT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (57 bp):
AAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGC
Found at i:73222 original size:342 final size:342
Alignment explanation
Indices: 72597--73284 Score: 1367
Period size: 342 Copynumber: 2.0 Consensus size: 342
72587 GAGCGCGTTC
72597 ATTAAGAGTGAGATAAGTCTTTGTTGGGACAATTCATGTTTTAGACATATAATTTGGATCAACCA
1 ATTAAGAGTGAGATAAGTCTTTGTTGGGACAATTCATGTTTTAGACATATAATTTGGATCAACCA
72662 TAAAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAAAGTT
66 TAAAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAAAGTT
72727 TTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAGAGATTTGTTTTA
131 TTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAGAGATTTGTTTTA
72792 ATATTCATAGATCTGGAATTTAGATATGAGAAATCCCAGGTTTAGTGATCGCAACTTAGTCTTGT
196 ATATTCATAGATCTGGAATTTAGATATGAGAAATCCCAGGTTTAGTGATCGCAACTTAGTCTTGT
72857 ACTTAGATCTTACCAATCATTTCTACTAGGATTGATAAGTACTTAGTAGATCTGAAGCATTGCTT
261 ACTTAGATCTTACCAATCATTTCTACTAGGATTGATAAGTACTTAGTAGATCTGAAGCATTGCTT
72922 GTTTGTTTGATCCATTT
326 GTTTGTTTGATCCATTT
72939 ATTAAGAGTGAGATAAGTCTTTGTTGGGACAATTCATGTTTTAGACATATAATTTGGATCAACCA
1 ATTAAGAGTGAGATAAGTCTTTGTTGGGACAATTCATGTTTTAGACATATAATTTGGATCAACCA
73004 TAAAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAAAGTT
66 TAAAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAAAGTT
73069 TTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAGAGATTTGTTTTA
131 TTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAGAGATTTGTTTTA
73134 ATATTCATAGATCTGGAATTTAGATATGAGAAATCCCAGGTTTAGTGATCGCAACTTAGTCTTGT
196 ATATTCATAGATCTGGAATTTAGATATGAGAAATCCCAGGTTTAGTGATCGCAACTTAGTCTTGT
*
73199 ACTTAGATCTTACCAATCATTTCTACTAGGATTGATAAGTACTTAGTAGATCTGAAGCCTTGCTT
261 ACTTAGATCTTACCAATCATTTCTACTAGGATTGATAAGTACTTAGTAGATCTGAAGCATTGCTT
73264 GTTTGTTTGATCCATTT
326 GTTTGTTTGATCCATTT
73281 ATTA
1 ATTA
73285 TTTTTTGCGT
Statistics
Matches: 345, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
342 345 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (342 bp):
ATTAAGAGTGAGATAAGTCTTTGTTGGGACAATTCATGTTTTAGACATATAATTTGGATCAACCA
TAAAAGTTTTTATGACATGGCAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAAAGTT
TTTATGACATGGTAAGCCATTGCTTAGTCATTCTAGGGAATTTGTAGAAGCAGAGATTTGTTTTA
ATATTCATAGATCTGGAATTTAGATATGAGAAATCCCAGGTTTAGTGATCGCAACTTAGTCTTGT
ACTTAGATCTTACCAATCATTTCTACTAGGATTGATAAGTACTTAGTAGATCTGAAGCATTGCTT
GTTTGTTTGATCCATTT
Found at i:75142 original size:18 final size:18
Alignment explanation
Indices: 75121--75167 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
75111 ATCTAGATCT
* *
75121 GGAAGTTGAAGTGAAAAG
1 GGAAGTTGAAGCGAAAAA
75139 GGAAGTTGAAGCGAAAAA
1 GGAAGTTGAAGCGAAAAA
75157 GGAAGTTGAAG
1 GGAAGTTGAAG
75168 ATATCATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.02, G:0.38, T:0.15
Consensus pattern (18 bp):
GGAAGTTGAAGCGAAAAA
Found at i:78098 original size:13 final size:13
Alignment explanation
Indices: 78080--78112 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
78070 TGTATTTCAT
78080 TTAGCATGCATCA
1 TTAGCATGCATCA
78093 TTAGCATGCATCA
1 TTAGCATGCATCA
78106 TTAGCAT
1 TTAGCAT
78113 TTTATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (13 bp):
TTAGCATGCATCA
Found at i:80846 original size:14 final size:15
Alignment explanation
Indices: 80827--80857 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
80817 TAACTATTTT
80827 TTTTAAAGACTT-TA
1 TTTTAAAGACTTGTA
80841 TTTTAAAGACTTGTA
1 TTTTAAAGACTTGTA
80856 TT
1 TT
80858 ATTTGAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (15 bp):
TTTTAAAGACTTGTA
Found at i:81141 original size:13 final size:14
Alignment explanation
Indices: 81123--81154 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81113 GTAACATAGA
81123 AATTTTT-CTTTTT
1 AATTTTTACTTTTT
81136 AATTTTTACTTTTT
1 AATTTTTACTTTTT
81150 -ATTTT
1 AATTTT
81155 GTTTTTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (14 bp):
AATTTTTACTTTTT
Found at i:88041 original size:47 final size:50
Alignment explanation
Indices: 87909--88052 Score: 138
Period size: 47 Copynumber: 3.0 Consensus size: 50
87899 GGTCACATAA
* * *
87909 CACATCGTGGGT--AAACCACCACATA-TCTACCGATGAACAGTCACATAGT
1 CACATCGTAGGTAAAAACCACCACATATTC-ACCGAT-AACGGCCACATAGT
** **
87958 CACATCGTAGGTAAAAACCACCACATATTCGTCGATAGTGGCCACATAG-
1 CACATCGTAGGTAAAAACCACCACATATTCACCGATAACGGCCACATAGT
* * *
88007 CACATTGT-GG-AAAAGCCACCACATATTTACCGATAACGGCCACATA
1 CACATCGTAGGTAAAAACCACCACATATTCACCGATAACGGCCACATA
88053 ATTTATAGTT
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
47 30 0.38
48 2 0.03
49 18 0.23
50 9 0.12
51 17 0.22
52 2 0.03
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (50 bp):
CACATCGTAGGTAAAAACCACCACATATTCACCGATAACGGCCACATAGT
Found at i:88734 original size:24 final size:24
Alignment explanation
Indices: 88708--88843 Score: 128
Period size: 24 Copynumber: 5.7 Consensus size: 24
88698 CGCAATTCAC
* * * *
88708 AAGAGTTCGCAATGCATAGCTCGC
1 AAGAGCTCGCAATGCACAGTTCGT
*
88732 AAGAGCTCGCAATGCATAGTTCGT
1 AAGAGCTCGCAATGCACAGTTCGT
* * *
88756 AAAAGCTCACAATGCGCAGTTCGT
1 AAGAGCTCGCAATGCACAGTTCGT
*
88780 AAGAGCTCGCAAGGCACAGTTCGT
1 AAGAGCTCGCAATGCACAGTTCGT
** * **
88804 AAGAGCTCTTAATCCACAACTCGT
1 AAGAGCTCGCAATGCACAGTTCGT
* *
88828 AAGAGTTCACAATGCA
1 AAGAGCTCGCAATGCA
88844 TAATTTGCAA
Statistics
Matches: 91, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 91 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.21
Consensus pattern (24 bp):
AAGAGCTCGCAATGCACAGTTCGT
Found at i:89139 original size:84 final size:84
Alignment explanation
Indices: 88998--89166 Score: 338
Period size: 84 Copynumber: 2.0 Consensus size: 84
88988 TGGTTCCATA
88998 ACCCGTGAAAGAGTTCGCACAACTTGCAAGAGAGTTCACTTTAAACTAAGGACTTACAAGATAGC
1 ACCCGTGAAAGAGTTCGCACAACTTGCAAGAGAGTTCACTTTAAACTAAGGACTTACAAGATAGC
89063 TAAGGAGCTTGTTACTACT
66 TAAGGAGCTTGTTACTACT
89082 ACCCGTGAAAGAGTTCGCACAACTTGCAAGAGAGTTCACTTTAAACTAAGGACTTACAAGATAGC
1 ACCCGTGAAAGAGTTCGCACAACTTGCAAGAGAGTTCACTTTAAACTAAGGACTTACAAGATAGC
89147 TAAGGAGCTTGTTACTACT
66 TAAGGAGCTTGTTACTACT
89166 A
1 A
89167 AGCCACAACA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (84 bp):
ACCCGTGAAAGAGTTCGCACAACTTGCAAGAGAGTTCACTTTAAACTAAGGACTTACAAGATAGC
TAAGGAGCTTGTTACTACT
Found at i:92879 original size:15 final size:15
Alignment explanation
Indices: 92855--92889 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
92845 ATTATAAAAC
92855 TAAG-AGAATTATAA
1 TAAGAAGAATTATAA
92869 TAAGAAGAATTATAA
1 TAAGAAGAATTATAA
92884 TAAGAA
1 TAAGAA
92890 TAAGAGAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.14, T:0.26
Consensus pattern (15 bp):
TAAGAAGAATTATAA
Found at i:96026 original size:19 final size:19
Alignment explanation
Indices: 96002--96066 Score: 73
Period size: 16 Copynumber: 3.5 Consensus size: 19
95992 TTTGTTTTAT
96002 ATTATTTATTTTTAATATA
1 ATTATTTATTTTTAATATA
*
96021 ATTA-TTCTTTTT--TATA
1 ATTATTTATTTTTAATATA
*
96037 ATTATTTTTTTTTATATATA
1 ATTATTTATTTTTA-ATATA
96057 GATTATTTAT
1 -ATTATTTAT
96067 CCAAACAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
16 8 0.21
17 7 0.18
18 7 0.18
19 4 0.11
20 4 0.11
21 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTATTTATTTTTAATATA
Found at i:96034 original size:34 final size:37
Alignment explanation
Indices: 95996--96063 Score: 106
Period size: 35 Copynumber: 1.9 Consensus size: 37
95986 TATTAATTTG
95996 TTTTAT-ATTATTTATTTTTA-ATATA-ATTATTCTT
1 TTTTATAATTATTTATTTTTATATATAGATTATTCTT
*
96030 TTTTATAATTATTTTTTTTTATATATAGATTATT
1 TTTTATAATTATTTATTTTTATATATAGATTATT
96064 TATCCAAACA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 6 0.20
35 13 0.43
36 5 0.17
37 6 0.20
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (37 bp):
TTTTATAATTATTTATTTTTATATATAGATTATTCTT
Found at i:101256 original size:12 final size:12
Alignment explanation
Indices: 101212--101277 Score: 50
Period size: 12 Copynumber: 5.8 Consensus size: 12
101202 CAATGCTACA
*
101212 TGTATATATAAT
1 TGTATATATAGT
*
101224 TGTACATAT--T
1 TGTATATATAGT
* *
101234 TCTACATATAGT
1 TGTATATATAGT
101246 TGTATATATAG-
1 TGTATATATAGT
*
101257 T-TATATATGGT
1 TGTATATATAGT
*
101268 TTTATATATA
1 TGTATATATA
101278 TGTAAACATA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
10 17 0.39
11 2 0.05
12 25 0.57
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.50
Consensus pattern (12 bp):
TGTATATATAGT
Found at i:101552 original size:316 final size:321
Alignment explanation
Indices: 100971--101570 Score: 958
Period size: 316 Copynumber: 1.9 Consensus size: 321
100961 TTTTACATAT
* *
100971 ATATTTATATTTATATGCTTGCGCCTTGGTTTACTCAGGCGAGCACTTTTTTTGCGCCTCAGGCA
1 ATATTTATATTTATATGCTTGCGCCTTGGTTTACTCAAGCGAGCACTTTTTTTACGCCTCAGGCA
* *
101036 ATATAAAGGTCCTAGCGCCTCGAGTGCGCTTGGCAGCCTTGACAACATTGAATAATATATATATA
66 ATATAAAGGTCCAAGCGCCTCGAGTGCACTTGGCAGCCTTGACAACATTG---AATATATATATA
* *
101101 TATATATGTTGAGAATCTTTGATAGCATTAAATAGTATCTTTAAAGATAATATTTGATTTTTAGA
128 TATATACGTTGAGAATCTTTAATAGCATTAAATAGTATCTTTAAAGATAATATTTGATTTTTAGA
* *
101166 GATTCTAATTAGGAGATATTATTTCCTCAGTAGATTCAATGCTACATGTATATATAATTGTACAT
193 GATTCTAATTAGGAGATATTATTTCCTCAGAAAATTCAATGCTACATGTATATATAATTGTACAT
*
101231 ATTTCTACATATAGTTGTATATATAGTTATATATGGTTTTATATATATGTAAACATATATATTC
258 ATTTCTACATATAGTTGTACATATAGTTATATATGGTTTTATATATATGTAAACATATATATTC
* * * *
101295 ATATTTATATTTATATGTTTGCGCCTTGGTTTACTCAAGCGAGCGCTTTTTTTACGCCTCGGGCT
1 ATATTTATATTTATATGCTTGCGCCTTGGTTTACTCAAGCGAGCACTTTTTTTACGCCTCAGGCA
* *
101360 ATATAAAGGTCCAAGCGCCTTGAGTGCACTTGGCGGCCTTGACAACATTG-A-ATA-A-A-ATAT
66 ATATAAAGGTCCAAGCGCCTCGAGTGCACTTGGCAGCCTTGACAACATTGAATATATATATATAT
* *
101420 ATACGTTGAGAATCTTTAATAGCATTAAATAGTATCTTTAGAGATTATATTTGATTTTTAGAGAT
131 ATACGTTGAGAATCTTTAATAGCATTAAATAGTATCTTTAAAGATAATATTTGATTTTTAGAGAT
* *
101485 TCTAATTAGGAGATATTATTTCCTTAGAAAATTCAATGCTACATGTATATATAGTTGTACATATT
196 TCTAATTAGGAGATATTATTTCCTCAGAAAATTCAATGCTACATGTATATATAATTGTACATATT
*
101550 TCTATATATAGTTGTACATAT
261 TCTACATATAGTTGTACATAT
101571 TCTAATTAGG
Statistics
Matches: 256, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
316 145 0.57
317 1 0.00
318 1 0.00
319 3 0.01
320 1 0.00
324 105 0.41
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (321 bp):
ATATTTATATTTATATGCTTGCGCCTTGGTTTACTCAAGCGAGCACTTTTTTTACGCCTCAGGCA
ATATAAAGGTCCAAGCGCCTCGAGTGCACTTGGCAGCCTTGACAACATTGAATATATATATATAT
ATACGTTGAGAATCTTTAATAGCATTAAATAGTATCTTTAAAGATAATATTTGATTTTTAGAGAT
TCTAATTAGGAGATATTATTTCCTCAGAAAATTCAATGCTACATGTATATATAATTGTACATATT
TCTACATATAGTTGTACATATAGTTATATATGGTTTTATATATATGTAAACATATATATTC
Found at i:101558 original size:22 final size:22
Alignment explanation
Indices: 101530--101571 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
101520 ATGCTACATG
101530 TATATATAGTTGTACATATTTC
1 TATATATAGTTGTACATATTTC
101552 TATATATAGTTGTACATATT
1 TATATATAGTTGTACATATT
101572 CTAATTAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (22 bp):
TATATATAGTTGTACATATTTC
Found at i:101901 original size:27 final size:28
Alignment explanation
Indices: 101856--101908 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
101846 GTTTGTTCCA
101856 CAAGATTGGAAAAAAGCTATCATTGATC
1 CAAGATTGGAAAAAAGCTATCATTGATC
* * *
101884 CAAGA-TGGAAGAAGGCTATGATTGA
1 CAAGATTGGAAAAAAGCTATCATTGA
101909 AGAAATGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.42, C:0.11, G:0.25, T:0.23
Consensus pattern (28 bp):
CAAGATTGGAAAAAAGCTATCATTGATC
Found at i:113491 original size:20 final size:19
Alignment explanation
Indices: 113430--113492 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
113420 TTTTATTTAT
*
113430 TTTTCAGTTTTTCTTCCTCATC
1 TTTTCA-TTTTTATTCC-C-TC
* **
113452 TTTTCAGTTTTATTTTCTC
1 TTTTCATTTTTATTCCCTC
113471 TTTTCATTTTTTATTCCCTC
1 TTTTCA-TTTTTATTCCCTC
113491 TT
1 TT
113493 CTTCTTCCAC
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 8 0.24
20 13 0.39
21 6 0.18
22 6 0.18
ACGTcount: A:0.10, C:0.22, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTCATTTTTATTCCCTC
Found at i:122842 original size:59 final size:59
Alignment explanation
Indices: 122750--122866 Score: 173
Period size: 59 Copynumber: 2.0 Consensus size: 59
122740 GAGCATCTTC
* * *
122750 TGCAGGTAAGTCTCTCTATCAACTTGCTGACCCTTAGTACCTATGGGCAGCTCATCCTT
1 TGCAGGTAAGTCTCTCTAGCAACTTACTGACCCTTAGTACCTATGGGCAACTCATCCTT
* *
122809 TGCAGGTCAGTCT-TCCTAGCAGCTTACTGACCCTTAGTACCTATGGGCAACTCATCCT
1 TGCAGGTAAGTCTCT-CTAGCAACTTACTGACCCTTAGTACCTATGGGCAACTCATCCT
122867 CTACAACATG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
58 1 0.02
59 51 0.98
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.31
Consensus pattern (59 bp):
TGCAGGTAAGTCTCTCTAGCAACTTACTGACCCTTAGTACCTATGGGCAACTCATCCTT
Found at i:124511 original size:14 final size:13
Alignment explanation
Indices: 124491--124539 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
124481 CTCGAAAACA
124491 GTCAACGATCAAT
1 GTCAACGATCAAT
*
124504 GCTCAACGGTCAAT
1 G-TCAACGATCAAT
*
124518 GGTCAATGATCAACT
1 -GTCAACGATCAA-T
124533 GTCAACG
1 GTCAACG
124540 GTTAATGGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 1 0.03
14 26 0.90
15 2 0.07
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (13 bp):
GTCAACGATCAAT
Found at i:124523 original size:21 final size:21
Alignment explanation
Indices: 124491--124546 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
124481 CTCGAAAACA
* *
124491 GTCAACGATCAATGCTCAACG
1 GTCAACGGTCAATGATCAACG
* *
124512 GTCAATGGTCAATGATCAACT
1 GTCAACGGTCAATGATCAACG
*
124533 GTCAACGGTTAATG
1 GTCAACGGTCAATG
124547 GGCCGAGTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (21 bp):
GTCAACGGTCAATGATCAACG
Found at i:124624 original size:27 final size:28
Alignment explanation
Indices: 124594--124651 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
124584 GTTAGATCGA
*
124594 TTGGGCTTGGTTC-ACTT-GGTTTAGGTG
1 TTGGACTTGGTTCAACTTGGGTTTAGG-G
* *
124621 TTGGATTTGGTTCAATTTGGGTTTAGGG
1 TTGGACTTGGTTCAACTTGGGTTTAGGG
124649 TTG
1 TTG
124652 TTTGGGTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 11 0.42
28 7 0.27
29 8 0.31
ACGTcount: A:0.10, C:0.07, G:0.36, T:0.47
Consensus pattern (28 bp):
TTGGACTTGGTTCAACTTGGGTTTAGGG
Found at i:126997 original size:81 final size:81
Alignment explanation
Indices: 126367--126988 Score: 825
Period size: 81 Copynumber: 7.7 Consensus size: 81
126357 ATTGTTATAG
* * * * * *
126367 GGGTAAAAGATTGTATGGCTTCAATCTGCCCTATGATTGGGGTAAGAGATTGGATGGGGTCTTCA
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
* * *
126432 ATCTACCCTTTAGTTA
66 ATCTGCCCTCTGGTTA
* * * * *
126448 GGGTAAAAGATTGGATAACTTCAATCTACCCCATGGTCCGGGTAAAAGATTAGATGGTGTCTTCA
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
* *
126513 ATCTACCCTTTGGTTA
66 ATCTGCCCTCTGGTTA
* * *
126529 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTTGATGATATCTTCA
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
126594 ATCTGCCCTCTGGTTA
66 ATCTGCCCTCTGGTTA
* * * *
126610 GGGTAAAAGATTGGATGACTTCAATCTGCCCCAAGGTCGTGGTAAAAGATTGGATGGTGTCTTCT
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
* * *
126675 ATCTGCACTTTAGTTA
66 ATCTGCCCTCTGGTTA
* *
126691 GGGTAAAAGATTGGAT-AGCTTCAATCTGCCCCATGGACGGGGTAAGAGATTGGATAGTGTCTTC
1 GGGTAAAAGATTGGATGA-CTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTC
* *
126755 AATCT-ACCTCCTAGTTA
65 AATCTGCCCT-CTGGTTA
* *
126772 GGGTAAAAGATTGGATGACTTCAATTTGCCCCATGGTTGGGGTAAGAGATTGGATGGTGTCTTCA
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
126837 ATCTGCCCTCTGGTTA
66 ATCTGCCCTCTGGTTA
* * * * * *
126853 GGGTAAAAGATTGGATGACTTCAATCTACCTCATGGTCAGGGTAAGTGAATGGATGGTTTCTTCA
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
126918 ATCTGCCCTCTGGTTA
66 ATCTGCCCTCTGGTTA
* * * * *
126934 GGGTAAAAGATTGGATGACTTCAATTTGCCTCATGATCGGGATAAAAGATTGGAT
1 GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGAT
126989 AATATCTTCG
Statistics
Matches: 475, Mismatches: 62, Indels: 8
0.87 0.11 0.01
Matches are distributed among these distances:
80 3 0.01
81 468 0.99
82 4 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (81 bp):
GGGTAAAAGATTGGATGACTTCAATCTGCCCCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
ATCTGCCCTCTGGTTA
Found at i:127964 original size:7 final size:7
Alignment explanation
Indices: 127945--128001 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
127935 TGACCCCTCC
127945 TTTTTC-
1 TTTTTCT
127951 TTTTTCT
1 TTTTTCT
*
127958 TTCTTCT
1 TTTTTCT
127965 TCTTTTCCT
1 T-TTTT-CT
127974 TTTTTCT
1 TTTTTCT
127981 TTTTTCT
1 TTTTTCT
127988 TTTCTTCT
1 TTT-TTCT
127996 CTTTTT
1 -TTTTT
128002 TTGGGTGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 6 0.14
7 19 0.43
8 13 0.30
9 6 0.14
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCT
Found at i:127969 original size:16 final size:15
Alignment explanation
Indices: 127949--128001 Score: 63
Period size: 16 Copynumber: 3.5 Consensus size: 15
127939 CCCTCCTTTT
127949 TCTTTTTCTTTCTTC
1 TCTTTTTCTTTCTTC
* *
127964 TTCTTTTCCTTTTTTC
1 -TCTTTTTCTTTCTTC
127980 T-TTTTTCTTTTCTTC
1 TCTTTTTC-TTTCTTC
127995 TCTTTTT
1 TCTTTTT
128002 TTGGGTGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 5 0.16
15 8 0.26
16 18 0.58
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TCTTTTTCTTTCTTC
Found at i:127977 original size:23 final size:24
Alignment explanation
Indices: 127951--128002 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
127941 CTCCTTTTTC
127951 TTTTTCTTTCTTCTTCTT-TTC-CT
1 TTTTTCTTTCTTCTT-TTCTTCTCT
*
127974 TTTTTCTTTTTTCTTTTCTTCTCT
1 TTTTTCTTTCTTCTTTTCTTCTCT
127998 TTTTT
1 TTTTT
128003 TGGGTGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 2 0.08
23 17 0.65
24 7 0.27
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTCTTTCTTCTTTTCTTCTCT
Found at i:136205 original size:50 final size:50
Alignment explanation
Indices: 136080--136221 Score: 137
Period size: 50 Copynumber: 2.8 Consensus size: 50
136070 AACTAATGGA
* * *
136080 TTACTAAATGCATGAC-TTGATTTAATGATGCAAACTTTAACTAACATGGGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAAA-TTTAACTAACATGGAAG
* ** * *
136132 TTA-TATAATGAATGAT-AGGATTTATGATGCATATTTAACTAACATGTAAG
1 TTACT-TAATGCATG-TCATTATTTATGATGCAAATTTAACTAACATGGAAG
*
136182 TTACTTAATGCATGTCATTATTTATGATGCAAACTTAACT
1 TTACTTAATGCATGTCATTATTTATGATGCAAATTTAACT
136222 GATCATGAGA
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
49 1 0.01
50 46 0.64
51 11 0.15
52 14 0.19
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (50 bp):
TTACTTAATGCATGTCATTATTTATGATGCAAATTTAACTAACATGGAAG
Found at i:136461 original size:17 final size:17
Alignment explanation
Indices: 136430--136462 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
136420 CAAACACTTA
136430 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
136447 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
136463 AGTTCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:144965 original size:25 final size:26
Alignment explanation
Indices: 144937--144987 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
144927 CGAAATCATT
*
144937 ATTA-ATAAAAATTTATTCAAATAAA
1 ATTATATAAAAATTTATGCAAATAAA
* *
144962 ATTATATAAGATTTTATGCAAATAAA
1 ATTATATAAAAATTTATGCAAATAAA
144988 TATTTATTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (26 bp):
ATTATATAAAAATTTATGCAAATAAA
Found at i:149641 original size:16 final size:16
Alignment explanation
Indices: 149620--149671 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
149610 CATTTCGTTA
149620 TAATAAAATAGAATTG
1 TAATAAAATAGAATTG
*
149636 TAATAAAATAGAGTTG
1 TAATAAAATAGAATTG
*
149652 TAATAGAATA-AGATTG
1 TAATAAAATAGA-ATTG
149668 TAAT
1 TAAT
149672 CAGTAATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
15 1 0.03
16 31 0.97
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (16 bp):
TAATAAAATAGAATTG
Found at i:149877 original size:58 final size:55
Alignment explanation
Indices: 149815--149970 Score: 172
Period size: 58 Copynumber: 2.7 Consensus size: 55
149805 TTTTTAGGTA
* *
149815 AATAATAATTGTTATTAAATTTTAATA-AGATTATTATTAAATATAATTTAATAAAAAT
1 AATAATAATT-TAATTAAATTTTAATATA-ATTATTATTAAATACAA-TTAAT-AAAAT
* *
149873 AATAAATAATTTAATTATATTTTAATATAATTATTATTATATACAATTAATAAAAT
1 AAT-AATAATTTAATTAAATTTTAATATAATTATTATTAAATACAATTAATAAAAT
* *
149929 AATATATAATTTAA-TAGCATTTTTAATATAATAATTATTAAA
1 AATA-ATAATTTAATTA--AATTTTAATATAATTATTATTAAA
149971 ATATAAATTG
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
55 3 0.04
56 17 0.20
57 25 0.29
58 32 0.38
59 8 0.09
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (55 bp):
AATAATAATTTAATTAAATTTTAATATAATTATTATTAAATACAATTAATAAAAT
Found at i:150051 original size:14 final size:14
Alignment explanation
Indices: 150003--150053 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 14
149993 TATGTCCTAA
150003 TTTATATGTTAAATT
1 TTTATATGTTAAA-T
*
150018 AGTTTATATGTCATAA-
1 --TTTATATGTTA-AAT
150034 TTTATATGTTAAAT
1 TTTATATGTTAAAT
150048 TTTATA
1 TTTATA
150054 ACATAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
13 2 0.07
14 16 0.53
17 10 0.33
18 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (14 bp):
TTTATATGTTAAAT
Found at i:150635 original size:21 final size:21
Alignment explanation
Indices: 150580--150635 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
150570 TTTGTGACAG
*
150580 TTCTACTGATACAAGTGTAAC
1 TTCTACTGATACTAGTGTAAC
* *
150601 ATCTACTGAAACTAGT-TAAGC
1 TTCTACTGATACTAGTGTAA-C
*
150622 TTCTACCGATACTA
1 TTCTACTGATACTA
150636 AAAATTCCAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.32
Consensus pattern (21 bp):
TTCTACTGATACTAGTGTAAC
Found at i:151365 original size:42 final size:42
Alignment explanation
Indices: 151289--151477 Score: 184
Period size: 42 Copynumber: 4.5 Consensus size: 42
151279 TATGCTCTAT
* * * * * * *
151289 CGAGTCATAAGTCTTCCTTAAATTATATTTTCATTCGCATCC
1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC
* * *
151331 CGAGACATGAGTCTTCCTTTAATCATAATATCATTCTCTTCT
1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC
* * *
151373 CGAGACATGAGCCTTCCTTTAATCATAATCTCATTCTTATCT
1 CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC
* * * *
151415 CGAGACATGAGTATTTCATTT-ATACA-AATTCTCATGCTCAACC
1 CGAGACATGAGT-CTTCCTTTAAT-CATAA-TCTCATTCTCATCC
151458 CGAGACATGAGTCTTCCTTT
1 CGAGACATGAGTCTTCCTTT
151478 TTATACATCA
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
42 92 0.75
43 30 0.25
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (42 bp):
CGAGACATGAGTCTTCCTTTAATCATAATCTCATTCTCATCC
Found at i:155684 original size:13 final size:13
Alignment explanation
Indices: 155626--155693 Score: 52
Period size: 13 Copynumber: 5.4 Consensus size: 13
155616 TATATATATA
*
155626 TTCATAT-ACCAC
1 TTCATATAACCAT
* *
155638 TTCATAAAATCA-
1 TTCATATAACCAT
155650 TTCATTATAACCAT
1 TTCA-TATAACCAT
* * *
155664 ATCTTATAATCAT
1 TTCATATAACCAT
155677 TTCATAT-ACCAT
1 TTCATATAACCAT
155689 TTCAT
1 TTCAT
155694 TTATCCATGT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
12 19 0.44
13 22 0.51
14 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:155980 original size:26 final size:26
Alignment explanation
Indices: 155951--156019 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
155941 TAACCATATA
*
155951 TGCTCACACGAGCTGTGAAATGGGTC
1 TGCTCACACAAGCTGTGAAATGGGTC
* *
155977 TGCTTACACAAGTTGTGAAATGGGTC
1 TGCTCACACAAGCTGTGAAATGGGTC
*
156003 AGCTCACACAAGCTGTG
1 TGCTCACACAAGCTGTG
156020 GGTCGAGATG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (26 bp):
TGCTCACACAAGCTGTGAAATGGGTC
Found at i:156298 original size:159 final size:159
Alignment explanation
Indices: 155990--156460 Score: 586
Period size: 159 Copynumber: 2.9 Consensus size: 159
155980 TTACACAAGT
* * ** *
155990 TGTGAAATGGGTCAGCTCACACAAGCTGTGGGTCGAGATGTGGGGCTACACGATGCTGCTCATAC
1 TGTGAAATGGGTCTGCTCACACGAGCTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACAC
* * * * *
156055 GAGTTATGGAGAATCCGTAGAATCCGTAATAAATGCCGGATCTCAGCCATCGGTAGGACATTTAA
66 GAGCTGTGGAGAATCC--ACAA-----AA-AAATGCAGGATCTCAGCCATCGGTAGGACATCTAA
* * *
156120 GACCAGCACCTATATAACCTGTAATTCTCACACGAGC
123 GACCAACACCTATATAACCTGTAATGCTAACACGAGC
* *
156157 TGTGAAACT-GGTCTGCTCACACGAGCTATGGGTCGAGATGTTAGGCTACACGATGTTGCTCACA
1 TGTGAAA-TGGGTCTGCTCACACGAGCTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACA
* * *
156221 CGAGCTGTAGAGAATCCACAAAAAAATGCAGGATCTCAACCATCAGTAGGACATCTAAGACCAAC
65 CGAGCTGTGGAGAATCCACAAAAAAATGCAGGATCTCAGCCATCGGTAGGACATCTAAGACCAAC
*
156286 ACCTATAAAACCTGTAATGCTAACACGAGC
130 ACCTATATAACCTGTAATGCTAACACGAGC
* * *
156316 TGTGAAGTGGGTCTACTCACACGAGCTGTGGGTCGAGATGTTAGGCTACAAGATGCTGCTCACAC
1 TGTGAAATGGGTCTGCTCACACGAGCTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACAC
* * * * *
156381 GAGCTGTGGAGAATCCAC-AACAAATGCAAGACCTCAGCCATCGGTAGGAAATCCAAGACCAACA
66 GAGCTGTGGAGAATCCACAAAAAAATGCAGGATCTCAGCCATCGGTAGGACATCTAAGACCAACA
* *
156445 CCCATATATCCTGTAA
131 CCTATATAACCTGTAA
156461 ATAACCCGTA
Statistics
Matches: 267, Mismatches: 35, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
158 53 0.20
159 139 0.52
160 2 0.01
165 3 0.01
167 69 0.26
168 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (159 bp):
TGTGAAATGGGTCTGCTCACACGAGCTGTGGGTCGAGATGTTAGGCTACACGATGCTGCTCACAC
GAGCTGTGGAGAATCCACAAAAAAATGCAGGATCTCAGCCATCGGTAGGACATCTAAGACCAACA
CCTATATAACCTGTAATGCTAACACGAGC
Found at i:156598 original size:2 final size:2
Alignment explanation
Indices: 156593--156617 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
156583 TTCATATATA
156593 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
156618 TTGATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:157905 original size:24 final size:24
Alignment explanation
Indices: 157877--157926 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
157867 AAGCTTGAAC
*
157877 CTAAGCAAACCGAAACTTTTTTTT
1 CTAAGCAAACCCAAACTTTTTTTT
157901 CTAAGCAAACCCAAACTTTTTTTT
1 CTAAGCAAACCCAAACTTTTTTTT
157925 CT
1 CT
157927 TTCTCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (24 bp):
CTAAGCAAACCCAAACTTTTTTTT
Found at i:160704 original size:14 final size:14
Alignment explanation
Indices: 160684--160722 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
160674 ACATAGCGTT
*
160684 AATTTATTGTTCTC
1 AATTTATTATTCTC
*
160698 GATTTATTATTCTC
1 AATTTATTATTCTC
*
160712 AATTTGTTATT
1 AATTTATTATT
160723 ATCTAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.10, G:0.08, T:0.59
Consensus pattern (14 bp):
AATTTATTATTCTC
Found at i:175657 original size:7 final size:7
Alignment explanation
Indices: 175645--175703 Score: 50
Period size: 7 Copynumber: 8.0 Consensus size: 7
175635 ATAAAAATAC
175645 ATAAAAA
1 ATAAAAA
175652 ATAAAAAA
1 AT-AAAAA
175660 ATAAAAACA
1 AT-AAAA-A
175669 TCATAAAAA
1 --ATAAAAA
*
175678 ATAATAA
1 ATAAAAA
175685 AT--AAA
1 ATAAAAA
175690 ATAAAAA
1 ATAAAAA
175697 ATAAAAA
1 ATAAAAA
175704 TCCTAACATG
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
5 4 0.09
7 20 0.45
8 12 0.27
9 2 0.05
10 4 0.09
11 2 0.05
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (7 bp):
ATAAAAA
Found at i:175664 original size:25 final size:25
Alignment explanation
Indices: 175635--175690 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
175625 CATTAATTTC
*
175635 ATAAAAATA-CATAAAAAATAAAAAA
1 ATAAAAACATCATAAAAAAT-AAAAA
*
175660 ATAAAAACATCATAAAAAATAATAA
1 ATAAAAACATCATAAAAAATAAAAA
175685 ATAAAA
1 ATAAAA
175691 TAAAAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (25 bp):
ATAAAAACATCATAAAAAATAAAAA
Found at i:175673 original size:36 final size:37
Alignment explanation
Indices: 175633--175703 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 37
175623 TGCATTAATT
175633 TCAT-AAAAATACAT-AA-AAAATAAAAAAATAAAAACA
1 TCATAAAAAATA-ATAAATAAAAT-AAAAAATAAAAACA
175669 TCATAAAAAATAATAAATAAAATAAAAAATAAAAA
1 TCATAAAAAATAATAAATAAAATAAAAAATAAAAA
175704 TCCTAACATG
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
36 6 0.19
37 21 0.66
38 5 0.16
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (37 bp):
TCATAAAAAATAATAAATAAAATAAAAAATAAAAACA
Found at i:175693 original size:19 final size:18
Alignment explanation
Indices: 175649--175704 Score: 67
Period size: 19 Copynumber: 3.0 Consensus size: 18
175639 AAATACATAA
*
175649 AAAATAAAAAAATAAAAAC
1 AAAAT-AAAAAATAAAAAT
**
175668 ATCATAAAAAATAATAAAT
1 AAAATAAAAAATAA-AAAT
175687 AAAATAAAAAATAAAAAT
1 AAAATAAAAAATAAAAAT
175705 CCTAACATGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 13 0.42
19 18 0.58
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATAAAAAATAAAAAT
Found at i:180062 original size:24 final size:24
Alignment explanation
Indices: 180028--180075 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
180018 ATTCATCTTT
*
180028 TATTAATTTGCTCTGACA-TTTTA
1 TATTAATTTGCACTGACAGTTTTA
180051 TATTACATTTGCACTGACAGTTTTA
1 TATTA-ATTTGCACTGACAGTTTTA
180076 CTCTTAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.23
24 12 0.55
25 5 0.23
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (24 bp):
TATTAATTTGCACTGACAGTTTTA
Found at i:182228 original size:45 final size:45
Alignment explanation
Indices: 182178--183041 Score: 994
Period size: 45 Copynumber: 18.9 Consensus size: 45
182168 GTCAAACCAT
*
182178 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * *
182223 CATCCAATCTTTTATCCCTAATCTAGAGGGGCATATTGAAGTCAT
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* ** *
182268 CATCCAATCTTTTACCCCTAATCTAAAGGGATAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
*
182313 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGATGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * * *
182358 CATCTAGTCTTTTACCCCTAATCTAAAGAGGCAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * * * * * *
182403 CATCTAGTCTTTTATCCATAATCCAGAGAGGCAGATTGAAGTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* *
182448 CAAAATCCAGTCTTTTACCCTTAATCTAGAGGGGCAAATTGAAGGCC-C
1 C---ATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAA-GCCAC
* * * **
182496 CACCCAATCTTTTATCCCTAATCTAGAAGGGCAAATTGAAGTAAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* *
182541 CAAATCTAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAACCCAC
1 C--ATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * * *
182588 TACCCAGTTTTTTACCCCTAATCTAGAGGGGCAAATTGTA-CTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGC-CAC
* * * *
182633 CAAATTCAATCTTTTACCCCTAATCTAAAAGGGCATATTGAAGCCAC
1 C--ATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * * * *
182680 CATCTAGTCTTTTACCCCTAATCCAAAGGGGCAGATTGAAGTCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* * * *
182725 CAAATCCAATCTTTTACCCCTAAACCCAGAAGGGCAAATTGAAGTCAC
1 C--ATCCAATCTTTTACCCCT-AATCTAGAGGGGCAAATTGAAGCCAC
* * *
182773 CATCTAATGTTTTACCCCTAATCTAGAGGGGCAAATTAAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* *
182818 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTTAAGCCAC
1 CATCCAATCTTTTACCCCT-AATCTAGAGGGGCAAATTGAAGCCAC
*
182864 CATCCAATCTTTTACCCCTAATCTAGAGGGACAAATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* *
182909 CATCCAATCTTTTACTCCTAATCTAGAGGGGAAAATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
* *
182954 CATCCAATCTTTTACCCTTAAATCTAGAGGGGCAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCT-AATCTAGAGGGGCAAATTGAAGCCAC
* * * *
183000 CATACAATCTTATACCCCTAAATCCAGAGGGGCAGATTGAAG
1 CATCCAATCTTTTACCCCT-AATCTAGAGGGGCAAATTGAAG
183042 TTACAACACC
Statistics
Matches: 702, Mismatches: 101, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.00
45 430 0.61
46 121 0.17
47 88 0.13
48 59 0.08
49 2 0.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (45 bp):
CATCCAATCTTTTACCCCTAATCTAGAGGGGCAAATTGAAGCCAC
Found at i:183159 original size:64 final size:64
Alignment explanation
Indices: 183058--183186 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
183048 CACCAAATCG
*
183058 TATACCCATGAAGTTGGAGTGGGTCGGATTGAATTTATGAAAGCAAATTCTATCTTCCTGAAGT
1 TATACCCATGAAGTTAGAGTGGGTCGGATTGAATTTATGAAAGCAAATTCTATCTTCCTGAAGT
183122 TATACCCATGAAGTTAGAGTGGGTCGGATTGAATTTATGAAAGCAAATTCTATCTTCCTGAAGT
1 TATACCCATGAAGTTAGAGTGGGTCGGATTGAATTTATGAAAGCAAATTCTATCTTCCTGAAGT
183186 T
1 T
183187 GCAGTGAAGT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (64 bp):
TATACCCATGAAGTTAGAGTGGGTCGGATTGAATTTATGAAAGCAAATTCTATCTTCCTGAAGT
Found at i:184063 original size:19 final size:19
Alignment explanation
Indices: 184019--184067 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
184009 ATTTTGACAT
*
184019 TTAATTTATTAATTTTTTG
1 TTAATTTATTTATTTTTTG
*
184038 TTTATTTATTTATTTATTTG
1 TTAATTTATTTATTT-TTTG
184058 -TAATTTATTT
1 TTAATTTATTT
184068 TCATGCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (19 bp):
TTAATTTATTTATTTTTTG
Found at i:184149 original size:25 final size:28
Alignment explanation
Indices: 184121--184174 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
184111 TTATTTTAGC
184121 ATTTTATTT-TTAT-TT-TTATTTATTT
1 ATTTTATTTATTATCTTGTTATTTATTT
*
184146 ATTTTGTTTAATTATCTTGTTATTTATTT
1 ATTTTATTT-ATTATCTTGTTATTTATTT
184175 TCATGCCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 8 0.33
27 4 0.17
28 2 0.08
29 10 0.42
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.74
Consensus pattern (28 bp):
ATTTTATTTATTATCTTGTTATTTATTT
Found at i:184155 original size:13 final size:13
Alignment explanation
Indices: 184129--184175 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
184119 GCATTTTATT
*
184129 TTTATTTTTATTTA
1 TTTA-TTTTGTTTA
184143 TTTATTTTGTTTA
1 TTTATTTTGTTTA
* *
184156 ATTATCTTG-TTA
1 TTTATTTTGTTTA
184168 TTTATTTT
1 TTTATTTT
184176 CATGCCATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
12 9 0.32
13 15 0.54
14 4 0.14
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.74
Consensus pattern (13 bp):
TTTATTTTGTTTA
Found at i:189905 original size:17 final size:18
Alignment explanation
Indices: 189883--189916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
189873 TAGATTGCAT
189883 ACATTTT-TATTGTCATC
1 ACATTTTATATTGTCATC
*
189900 ACATTTTATTTTGTCAT
1 ACATTTTATATTGTCAT
189917 TGCATTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.56
Consensus pattern (18 bp):
ACATTTTATATTGTCATC
Found at i:194055 original size:21 final size:21
Alignment explanation
Indices: 194009--194051 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
193999 AATTAAAATT
*
194009 AATAAAATAAATGAGTAATAA
1 AATAAAATAAATGAATAATAA
194030 AATAAAATAAAT-AATAATAA
1 AATAAAATAAATGAATAATAA
194050 AA
1 AA
194052 ATAACAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AATAAAATAAATGAATAATAA
Found at i:206869 original size:43 final size:43
Alignment explanation
Indices: 206772--206942 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
206762 AATTTAATGA
* * * * *
206772 AAATGAGA-GGAACATTGTTTCCTGATATTGATAGTATGTGATC
1 AAATGA-ATGGAACACTGTTTCCTAATATTGAAAATATGTGATT
* * ** **
206815 GATTGCGTGGAACACAATTTCCTAATATTGAAAATATGTGATT
1 AAATGAATGGAACACTGTTTCCTAATATTGAAAATATGTGATT
* * *
206858 AAATGAATGGAACATTGTTTCC-AATATT-AAAAGAATGTGATC
1 AAATGAATGGAACACTGTTTCCTAATATTGAAAA-TATGTGATT
* **
206900 AAATGAATGGAACACTGTTTGCTAATATTGATCATATGTGATT
1 AAATGAATGGAACACTGTTTCCTAATATTGAAAATATGTGATT
206943 GATTGAGAGC
Statistics
Matches: 98, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
41 4 0.04
42 33 0.34
43 59 0.60
44 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (43 bp):
AAATGAATGGAACACTGTTTCCTAATATTGAAAATATGTGATT
Found at i:206897 original size:42 final size:42
Alignment explanation
Indices: 206822--206930 Score: 130
Period size: 42 Copynumber: 2.5 Consensus size: 42
206812 ATCGATTGCG
** * *
206822 TGGAACACAATTTCCTAATATTGAAAATATGTGATTAAATGAA
1 TGGAACACTGTTTCC-AATATTGAAAAAATGTGATCAAATGAA
*
206865 TGGAACATTGTTTCCAATATT-AAAAGAATGTGATCAAATGAA
1 TGGAACACTGTTTCCAATATTGAAAA-AATGTGATCAAATGAA
*
206907 TGGAACACTGTTTGCTAATATTGA
1 TGGAACACTGTTT-CCAATATTGA
206931 TCATATGTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
41 4 0.07
42 32 0.57
43 19 0.34
44 1 0.02
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (42 bp):
TGGAACACTGTTTCCAATATTGAAAAAATGTGATCAAATGAA
Found at i:206925 original size:85 final size:86
Alignment explanation
Indices: 206772--206951 Score: 202
Period size: 85 Copynumber: 2.1 Consensus size: 86
206762 AATTTAATGA
* * * * * * **
206772 AAATGAGAGGAACATTGTTTCCTGATATTGATAGTATGTGATCGATTGCGTGGAACACAATTTCC
1 AAATGAGAGGAACATTGTTTCCTAATATTAAAAGAATGTGATCAAATGAATGGAACACAATTTCC
206837 TAATATTGAAAATATGTGATT
66 TAATATTGAAAATATGTGATT
** *
206858 AAATGA-ATGGAACATTGTTTCC-AATATTAAAAGAATGTGATCAAATGAATGGAACACTGTTTG
1 AAATGAGA-GGAACATTGTTTCCTAATATTAAAAGAATGTGATCAAATGAATGGAACACAATTTC
**
206921 CTAATATTGATCATATGTGATT
65 CTAATATTGAAAATATGTGATT
* *
206943 GATTGAGAG
1 AAATGAGAG
206952 CATGTTGAAA
Statistics
Matches: 77, Mismatches: 15, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
85 56 0.73
86 21 0.27
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (86 bp):
AAATGAGAGGAACATTGTTTCCTAATATTAAAAGAATGTGATCAAATGAATGGAACACAATTTCC
TAATATTGAAAATATGTGATT
Found at i:209147 original size:20 final size:20
Alignment explanation
Indices: 209101--209169 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
209091 AATTGAAGTG
* * **
209101 TTAAAATGATTTTGACATGG
1 TTAAAATCATTTTGACTTAT
*
209121 TTGAAATCATTTTGACTTAT
1 TTAAAATCATTTTGACTTAT
*
209141 TTAAAATCATTTTAACTTGATT
1 TTAAAATCATTTTGACTT-A-T
209163 TTAAAAT
1 TTAAAAT
209170 TGTTTCAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 31 0.77
21 1 0.03
22 8 0.20
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (20 bp):
TTAAAATCATTTTGACTTAT
Found at i:215161 original size:22 final size:19
Alignment explanation
Indices: 215136--215177 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
215126 TGATAATAAC
215136 TAATATATAATTACATTTATTA
1 TAATATAT-ATTA-A-TTATTA
215158 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
215177 T
1 T
215178 CAATTTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:215898 original size:25 final size:26
Alignment explanation
Indices: 215870--215918 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
215860 AAAATTTCTC
215870 TTAAATTTT-AATTTGATTT-AATTAT
1 TTAAATTTTCAATTT-ATTTGAATTAT
*
215895 TTAACTTTTCAATTTATTTGAATT
1 TTAAATTTTCAATTTATTTGAATT
215919 GTTAATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (26 bp):
TTAAATTTTCAATTTATTTGAATTAT
Found at i:215923 original size:25 final size:25
Alignment explanation
Indices: 215870--215930 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
215860 AAAATTTCTC
*
215870 TTAAATTTTAATTTGATTTAATTAT
1 TTAAATTTTAATTTGATTTAATTAG
*
215895 TTAACTTTTCAATTT-ATTTGAATT-G
1 TTAAATTTT-AATTTGATTT-AATTAG
215920 TTAATATTTTA
1 TTAA-ATTTTA
215931 TGCTAATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 17 0.57
26 13 0.43
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (25 bp):
TTAAATTTTAATTTGATTTAATTAG
Found at i:219988 original size:19 final size:19
Alignment explanation
Indices: 219964--220014 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
219954 AAAGTTAATA
219964 ACAAATTTGATTACGGTTG
1 ACAAATTTGATTACGGTTG
219983 ACAAATTTGATTACGGTTG
1 ACAAATTTGATTACGGTTG
220002 ACAAATTTGATTA
1 ACAAATTTGATTA
220015 TAGTGGGTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (19 bp):
ACAAATTTGATTACGGTTG
Found at i:221954 original size:21 final size:21
Alignment explanation
Indices: 221928--221977 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
221918 CATTGTGGTT
*
221928 GTTGGGAAAGTAAATGTAGCC
1 GTTGGGAAAGTAAATCTAGCC
*
221949 GTTGGGAAAGTAAATCTAGTC
1 GTTGGGAAAGTAAATCTAGCC
221970 GTTCGGGA
1 GTT-GGGA
221978 TGAAATACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.30, C:0.10, G:0.34, T:0.26
Consensus pattern (21 bp):
GTTGGGAAAGTAAATCTAGCC
Found at i:226269 original size:24 final size:24
Alignment explanation
Indices: 226230--226288 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
226220 CTAATCAGAA
* *
226230 TTTAATTAAAACAAATAAATAAAG
1 TTTAATTGAAACAAATAAACAAAG
*
226254 TTTAATTGAAATAAATAAACAAAG
1 TTTAATTGAAACAAATAAACAAAG
*
226278 TTTAACTGAAA
1 TTTAATTGAAA
226289 GATTATTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.31
Consensus pattern (24 bp):
TTTAATTGAAACAAATAAACAAAG
Found at i:227461 original size:22 final size:22
Alignment explanation
Indices: 227433--227486 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
227423 CTATCAAGAA
227433 TGTTGCGACTTCAAGTGTTGGG
1 TGTTGCGACTTCAAGTGTTGGG
227455 TGTTGCGACTTCAAGTGTTGGG
1 TGTTGCGACTTCAAGTGTTGGG
*
227477 TGTCGCGACT
1 TGTTGCGACT
227487 CTAAGGTCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.13, C:0.17, G:0.35, T:0.35
Consensus pattern (22 bp):
TGTTGCGACTTCAAGTGTTGGG
Found at i:230481 original size:2 final size:2
Alignment explanation
Indices: 230476--230507 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
230466 TAGTATGATC
230476 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
230508 CAGCCTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:232263 original size:2 final size:2
Alignment explanation
Indices: 232256--232283 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
232246 TTGTTTTGGG
232256 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
232284 TAGCCCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:233185 original size:30 final size:31
Alignment explanation
Indices: 233150--233218 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 31
233140 TGTTAATTTA
*
233150 ACAAAACAGTCACTCAACTT-T-GAAAAGGTG
1 ACAAAACAGTCACTAAACTTATCGAAAA-GTG
*
233180 ACAAAACAGTCACTAAAGTTATCGAAAAGTG
1 ACAAAACAGTCACTAAACTTATCGAAAAGTG
233211 ACAAAACA
1 ACAAAACA
233219 ATCCTCTACT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
30 18 0.51
31 12 0.34
32 5 0.14
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.17
Consensus pattern (31 bp):
ACAAAACAGTCACTAAACTTATCGAAAAGTG
Found at i:243517 original size:69 final size:68
Alignment explanation
Indices: 243400--243533 Score: 214
Period size: 69 Copynumber: 2.0 Consensus size: 68
243390 TCGATATAAA
* * *
243400 TATATTAGTTATATTATAATTCACTTAATAATAATGTTAATTTTAGTTATAAAACAAATGCTTAT
1 TATAATAGTTATATTATAATTCACATAATAATAATGTTAATTTCAGTTATAAAACAAATGCTTAT
243465 TAG
66 TAG
* *
243468 TATAATAGTTATATTATAATTTCACATAATAATAATGTTAATTTCAGTTATGAAATAAATGCTTA
1 TATAATAGTTATATTATAA-TTCACATAATAATAATGTTAATTTCAGTTATAAAACAAATGCTTA
243533 T
65 T
243534 ATATACATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
68 18 0.30
69 42 0.70
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (68 bp):
TATAATAGTTATATTATAATTCACATAATAATAATGTTAATTTCAGTTATAAAACAAATGCTTAT
TAG
Found at i:249375 original size:21 final size:21
Alignment explanation
Indices: 249349--249389 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
249339 CCCTCCCAAC
249349 TTTGAAGTTTGCAAGAGTGAA
1 TTTGAAGTTTGCAAGAGTGAA
249370 TTTGAAGTTTGCAAGAGTGA
1 TTTGAAGTTTGCAAGAGTGA
249390 GTTTCTGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (21 bp):
TTTGAAGTTTGCAAGAGTGAA
Found at i:261122 original size:24 final size:21
Alignment explanation
Indices: 261072--261125 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 21
261062 AATACAAAAA
261072 AAAAATAAAAATAATAACAAC
1 AAAAATAAAAATAATAACAAC
*
261093 ACAAATGATAAAATAAATAA-ATAC
1 AAAAAT-A-AAAAT-AATAACA-AC
261117 AAAAATAAA
1 AAAAATAAA
261126 TATCAATGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
21 5 0.19
22 3 0.11
23 7 0.26
24 12 0.44
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAAATAAAAATAATAACAAC
Found at i:269092 original size:21 final size:20
Alignment explanation
Indices: 269059--269102 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
269049 AATATAAATA
* * *
269059 ATAAAATATTATTATTTATT
1 ATAAAATAATATTAATTAAT
269079 ATAATAATAATATTAATTAAT
1 ATAA-AATAATATTAATTAAT
269100 ATA
1 ATA
269103 TCATTTGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATAAAATAATATTAATTAAT
Found at i:269730 original size:24 final size:24
Alignment explanation
Indices: 269670--269733 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
269660 CCCTATTCTT
*
269670 CCCCTTTTTGTCTCACTCCATCTCAC
1 CCCCTTTTT-TCTC-CTACATCTCAC
*
269696 CCCCTTATTTCTCCTAC-TCTCAC
1 CCCCTTTTTTCTCCTACATCTCAC
*
269719 CATCCTTTTTTCTCC
1 C-CCCTTTTTTCTCC
269734 ATTCTAGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 7 0.21
24 14 0.42
25 4 0.12
26 8 0.24
ACGTcount: A:0.11, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CCCCTTTTTTCTCCTACATCTCAC
Found at i:269823 original size:54 final size:54
Alignment explanation
Indices: 269760--269869 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
269750 AATAACATAA
*
269760 TCCCTCTAGCTAGCCTATGAGTATTTTCTTTCTTTTTGGTTCTTGAGTAAGCTT
1 TCCCTCTAGCTAGCCTATGAGTATTTTCTTTCTTTTTGGTTCTTGAGTAAACTT
269814 TCCCTCTAGCTAGCCTATGAGTATTTTCTTTCTTTTTGGTTCTTGAGTAAACTT
1 TCCCTCTAGCTAGCCTATGAGTATTTTCTTTCTTTTTGGTTCTTGAGTAAACTT
269868 TC
1 TC
269870 TTTCTATTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.48
Consensus pattern (54 bp):
TCCCTCTAGCTAGCCTATGAGTATTTTCTTTCTTTTTGGTTCTTGAGTAAACTT
Found at i:272200 original size:16 final size:17
Alignment explanation
Indices: 272167--272200 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
272157 ATGAGTTAGA
*
272167 ATAATGTTTAGATATTT
1 ATAATGGTTAGATATTT
272184 ATAATGGTTAG-TATTT
1 ATAATGGTTAGATATTT
272200 A
1 A
272201 GGGTTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (17 bp):
ATAATGGTTAGATATTT
Found at i:279884 original size:2 final size:2
Alignment explanation
Indices: 279877--279910 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
279867 AAAATTTATC
*
279877 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
279911 TCTTTTTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:283683 original size:8 final size:8
Alignment explanation
Indices: 283670--283694 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
283660 CATTTCCAAA
283670 AGAATTGT
1 AGAATTGT
283678 AGAATTGT
1 AGAATTGT
283686 AGAATTGT
1 AGAATTGT
283694 A
1 A
283695 TGAAATACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.24, T:0.36
Consensus pattern (8 bp):
AGAATTGT
Found at i:288194 original size:23 final size:22
Alignment explanation
Indices: 288163--288206 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
288153 AAAGAAATAA
*
288163 AATTAACCCAATTTAATTAATT
1 AATTAACCCAAATTAATTAATT
*
288185 AATTCAACCCAAATTATTTAAT
1 AATT-AACCCAAATTAATTAAT
288207 GAAATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (22 bp):
AATTAACCCAAATTAATTAATT
Found at i:290620 original size:21 final size:24
Alignment explanation
Indices: 290578--290620 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
290568 AAATAATATG
290578 TTTTGATATAACAAGTTAAAGTGA
1 TTTTGATATAACAAGTTAAAGTGA
290602 TTTTGA-ATAA-AAG-TAAAGT
1 TTTTGATATAACAAGTTAAAGT
290621 TGTGCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 4 0.21
24 6 0.32
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.37
Consensus pattern (24 bp):
TTTTGATATAACAAGTTAAAGTGA
Found at i:290856 original size:21 final size:21
Alignment explanation
Indices: 290832--290895 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
290822 CAAACAATGA
290832 CAAAAAGTATCAATACATTTT
1 CAAAAAGTATCAATACATTTT
* * *
290853 CAAAAAGTATCTACAAATTTTT
1 CAAAAAGTATCAATACA-TTTT
* * *
290875 TAAAAAGTATCGATACCTTTT
1 CAAAAAGTATCAATACATTTT
290896 ATTAGGTATC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 18 0.53
22 16 0.47
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (21 bp):
CAAAAAGTATCAATACATTTT
Found at i:295026 original size:24 final size:24
Alignment explanation
Indices: 294999--295052 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
294989 GATGATTGCG
*
294999 CTCACAGAGGGGTGCAGCATTGTA
1 CTCACAGAGGGGTGCAGCATTATA
*
295023 CTCACAGAGGGGTGCAGCGTTATA
1 CTCACAGAGGGGTGCAGCATTATA
295047 CTCACA
1 CTCACA
295053 AACAAGCTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (24 bp):
CTCACAGAGGGGTGCAGCATTATA
Found at i:301616 original size:18 final size:17
Alignment explanation
Indices: 301580--301629 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
301570 TTAGTTTTAA
301580 TGCATTTTTGTTATCAC
1 TGCATTTTTGTTATCAC
* *
301597 TGCATTTTATTTTGTCAC
1 TGCATTTT-TGTTATCAC
301615 TGCATCATTTTGTTA
1 TGCAT--TTTTGTTA
301630 ACTTAGTTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 8 0.31
18 12 0.46
19 3 0.12
20 3 0.12
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (17 bp):
TGCATTTTTGTTATCAC
Found at i:308984 original size:16 final size:16
Alignment explanation
Indices: 308955--308994 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
308945 GTTTAAAAGC
* *
308955 TTATTTATTGATTTAT
1 TTATTAATTCATTTAT
308971 TTATTAATTCATTTAT
1 TTATTAATTCATTTAT
308987 TTATTAAT
1 TTATTAAT
308995 GATATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (16 bp):
TTATTAATTCATTTAT
Found at i:309133 original size:23 final size:24
Alignment explanation
Indices: 309077--309139 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
309067 TCATTAACAT
*
309077 TGTTTGTGAACATATTCAATTATA
1 TGTTCGTGAACATATTCAATTATA
* * **
309101 TGTTCATGAACATGTTCGTTTA-A
1 TGTTCGTGAACATATTCAATTATA
309124 TGTTCGTGAACATATT
1 TGTTCGTGAACATATT
309140 TGATTAAGTT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 15 0.47
24 17 0.53
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (24 bp):
TGTTCGTGAACATATTCAATTATA
Found at i:309146 original size:23 final size:23
Alignment explanation
Indices: 309077--309146 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
309067 TCATTAACAT
* *
309077 TGTTTGTGAACATATTCAATTATA
1 TGTTCGTGAACATATTCGATTA-A
* * *
309101 TGTTCATGAACATGTTCGTTTAA
1 TGTTCGTGAACATATTCGATTAA
*
309124 TGTTCGTGAACATATTTGATTAA
1 TGTTCGTGAACATATTCGATTAA
309147 GTTAAATAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 20 0.54
24 17 0.46
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (23 bp):
TGTTCGTGAACATATTCGATTAA
Found at i:315981 original size:156 final size:156
Alignment explanation
Indices: 315670--315981 Score: 590
Period size: 157 Copynumber: 2.0 Consensus size: 156
315660 GTGGGCGAAA
315670 ACCGTCTTTTAATCGAGGTGCTATCGCAGGCAGCACATCATTGCAGCATGTTTTCTAGGGCCGGC
1 ACCGTCTTTTAATCGAGGTGCTATCGCAGGCAGCACATCATTGCAGCATGTTTTCTAGGGCCGGC
315735 TTACCCCTCTCCGATTCAACTAGCTCGGGTTTAAATTTTTTAACTTATTTTTTCATACACTTACA
66 TTACCCCTCTCCGATTCAACTAGCTCGGGTTTAAATTTTTTAACTTATTTTTTCATACACTTACA
315800 TTTGAACAAAAAAATAGAATTACGAG
131 TTTGAACAAAAAAATAGAATTACGAG
*
315826 ACCGTCTTTTAATCGAGGTGGCTATCGCAGGCAGCACATCATTGCAGCATGTTTTCTTGGGCCGG
1 ACCGTCTTTTAATCGAGGT-GCTATCGCAGGCAGCACATCATTGCAGCATGTTTTCTAGGGCCGG
315891 CTTACCCCTCTCCGATTCAACTAGCTCGGGTTTAAATTTTTTAACTTA-TTTTTCATACACTTAC
65 CTTACCCCTCTCCGATTCAACTAGCTCGGGTTTAAATTTTTTAACTTATTTTTTCATACACTTAC
*
315955 ATTTGAACAAAAAAATATAATTACGAG
130 ATTTGAACAAAAAAATAGAATTACGAG
315982 TCAATAAGTT
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
156 61 0.40
157 92 0.60
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (156 bp):
ACCGTCTTTTAATCGAGGTGCTATCGCAGGCAGCACATCATTGCAGCATGTTTTCTAGGGCCGGC
TTACCCCTCTCCGATTCAACTAGCTCGGGTTTAAATTTTTTAACTTATTTTTTCATACACTTACA
TTTGAACAAAAAAATAGAATTACGAG
Found at i:316971 original size:134 final size:136
Alignment explanation
Indices: 316702--316973 Score: 406
Period size: 137 Copynumber: 2.0 Consensus size: 136
316692 AGCATTCACC
* * * * * * * *
316702 ACTTAACAGGCCTACAGAATGTGGAGGATTAGTTACTAAATTTGTTTCAGTAAATATCTTGAAAA
1 ACTTAACAGACCTACAGAATGCGAAAGACTAATTACTAAATTTGCTCCAGTAAATATCTTGAAAA
316767 ATAAAATAAAAACTTTATAACTATTAATGTAAAAATGGTTTAAATAATAAAATAAACTTGCTAAT
66 ATAAAATAAAAAC-TTATAACTATTAATGTAAAAATGGTTTAAATAATAAAATAAACTTGCTAAT
316832 CGAACTT
130 CGAACTT
* *
316839 ACTTAACAGACTTACAGAATGCGAAAGACTAATTACTGAATTTGCTCCAGTAAATATCTTGAAAA
1 ACTTAACAGACCTACAGAATGCGAAAGACTAATTACTAAATTTGCTCCAGTAAATATCTTGAAAA
*
316904 ATAAAA-AAAAA-TTATAACTATTAATGTAAAAATGTTTTAAATAATAAAATAAACTTGC-AAGT
66 ATAAAATAAAAACTTATAACTATTAATGTAAAAATGGTTTAAATAATAAAATAAACTTGCTAA-T
316966 CGAACTT
130 CGAACTT
316973 A
1 A
316974 TCTAATGAAA
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
133 2 0.02
134 55 0.45
136 5 0.04
137 61 0.50
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (136 bp):
ACTTAACAGACCTACAGAATGCGAAAGACTAATTACTAAATTTGCTCCAGTAAATATCTTGAAAA
ATAAAATAAAAACTTATAACTATTAATGTAAAAATGGTTTAAATAATAAAATAAACTTGCTAATC
GAACTT
Found at i:317061 original size:19 final size:18
Alignment explanation
Indices: 317021--317063 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
317011 TTATATAAAA
*
317021 TATTA-ATAAAATTATTT
1 TATTACATAAAAATATTT
*
317038 AATTACATAAACAATATTT
1 TATTACATAAA-AATATTT
317057 TATTACA
1 TATTACA
317064 CAAATTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 4 0.19
18 5 0.24
19 12 0.57
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (18 bp):
TATTACATAAAAATATTT
Found at i:324866 original size:46 final size:46
Alignment explanation
Indices: 324799--324892 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
324789 TGACCACTTG
324799 TCTCGCTTGGAAGCTGAAAGCGAAGATGGCAACCAGTCACGTATTA
1 TCTCGCTTGGAAGCTGAAAGCGAAGATGGCAACCAGTCACGTATTA
324845 TCTCGCTTGGAAGCTGAAAGCGAAGATGGCAACCAGTCACGTATTA
1 TCTCGCTTGGAAGCTGAAAGCGAAGATGGCAACCAGTCACGTATTA
324891 TC
1 TC
324893 GATGCATTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (46 bp):
TCTCGCTTGGAAGCTGAAAGCGAAGATGGCAACCAGTCACGTATTA
Found at i:328721 original size:23 final size:23
Alignment explanation
Indices: 328695--328839 Score: 211
Period size: 23 Copynumber: 6.2 Consensus size: 23
328685 AACACTAGCA
*
328695 TGCTCTCTGATTAGCACTGTTTG
1 TGCTCTCTGATTAGCACTGTGTG
* *
328718 TGCTCTCTGTTTAGCAC-GTCTCG
1 TGCTCTCTGATTAGCACTGTGT-G
*
328741 TGCTCTTTGTTATTAGCACTGTGTG
1 TGCTCTCTG--ATTAGCACTGTGTG
328766 TGCTCTCTGATTAGCACTGTGTG
1 TGCTCTCTGATTAGCACTGTGTG
328789 TGCTCTCTGATTAGCACTGTGTG
1 TGCTCTCTGATTAGCACTGTGTG
*
328812 TGCTCTCTGATTAGCATTGTGTG
1 TGCTCTCTGATTAGCACTGTGTG
328835 TGCTC
1 TGCTC
328840 AGTACTTTGT
Statistics
Matches: 111, Mismatches: 7, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
22 3 0.03
23 89 0.80
25 16 0.14
26 3 0.03
ACGTcount: A:0.12, C:0.22, G:0.24, T:0.42
Consensus pattern (23 bp):
TGCTCTCTGATTAGCACTGTGTG
Found at i:328815 original size:71 final size:69
Alignment explanation
Indices: 328695--328839 Score: 211
Period size: 71 Copynumber: 2.1 Consensus size: 69
328685 AACACTAGCA
* * *
328695 TGCTCTCTGATTAGCACTGTTTGTGCTCTCTGTTTAGCACGTCTCGTGCTCTTTGTTATTAGCAC
1 TGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACGTCTCGTGCTCTCTG--ATTAGCAC
328760 TGTGTG
64 TGTGTG
* *
328766 TGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACTGTGT-GTGCTCTCTGATTAGCATT
1 TGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCAC-GTCTCGTGCTCTCTGATTAGCACT
328830 GTGTG
65 GTGTG
328835 TGCTC
1 TGCTC
328840 AGTACTTTGT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
69 18 0.26
71 47 0.69
72 3 0.04
ACGTcount: A:0.12, C:0.22, G:0.24, T:0.42
Consensus pattern (69 bp):
TGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACGTCTCGTGCTCTCTGATTAGCACTG
TGTG
Found at i:328873 original size:23 final size:23
Alignment explanation
Indices: 328843--328932 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
328833 TGTGCTCAGT
328843 ACTTTGTGTACTCTCTGTTTAGC
1 ACTTTGTGTACTCTCTGTTTAGC
* *
328866 ACTTTGTGTGCTCTCTGTTGCCCAGC
1 ACTTTGTGTACTCTCTGTT---TAGC
*
328892 ACTTATGTG--CTCTCTGTTTAGT
1 ACTT-TGTGTACTCTCTGTTTAGC
**
328914 AC-TTCAGTACTCTCTGTTT
1 ACTTTGTGTACTCTCTGTTT
328933 GTTCCGTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
20 2 0.04
21 1 0.02
22 14 0.25
23 18 0.33
25 9 0.16
26 7 0.13
27 4 0.07
ACGTcount: A:0.12, C:0.24, G:0.18, T:0.46
Consensus pattern (23 bp):
ACTTTGTGTACTCTCTGTTTAGC
Done.