Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012745.1 Kokia drynarioides strain JFW-HI SEQ_127756, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2331
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1841 original size:13 final size:14

Alignment explanation


    Indices: 1823--1852  Score: 53
    Period size: 13  Copynumber: 2.2  Consensus size: 14

       1813 TTGATTTGAT

                          
       1823 TTGATTATGTAA-A
          1 TTGATTATGTAATA

                          
       1836 TTGATTATGTAATA
          1 TTGATTATGTAATA

               
       1850 TTG
          1 TTG

       1853 TAAATCCCTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   12  0.75
  14    4  0.25

ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50


Consensus pattern (14 bp):   
TTGATTATGTAATA

Found at i:2074 original size:13 final size:13

Alignment explanation


    Indices: 2056--2082  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       2046 TTTAGCCGAG

                         
       2056 AGTTGCTTCTGCT
          1 AGTTGCTTCTGCT

                         
       2069 AGTTGCTTCTGCT
          1 AGTTGCTTCTGCT

             
       2082 A
          1 A

       2083 TATAAATTGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44


Consensus pattern (13 bp):   
AGTTGCTTCTGCT
Done.