Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012748.1 Kokia drynarioides strain JFW-HI SEQ_127759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2570
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31


Found at i:279 original size:24 final size:23

Alignment explanation


    Indices: 252--304  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 23

        242 GAAGAGAAAT

                   *   *            
        252 AAGAAGAGAAGGAGGAGGAAAAGG
          1 AAGAAGAAAAGAAGGA-GAAAAGG

                               *    
        276 AAGAAAGAAAAGAAGGAGAGAAGG
          1 AAG-AAGAAAAGAAGGAGAAAAGG

                 
        300 AAGAA
          1 AAGAA

        305 ATTTTTGTCG


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  23    2  0.08
  24   12  0.48
  25   11  0.44

ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00


Consensus pattern (23 bp):   
AAGAAGAAAAGAAGGAGAAAAGG
Done.