Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012749.1 Kokia drynarioides strain JFW-HI SEQ_127760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19252
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Warning! 13 characters in sequence are not A, C, G, or T
Found at i:531 original size:216 final size:214
Alignment explanation
Indices: 148--1250 Score: 1302
Period size: 216 Copynumber: 5.1 Consensus size: 214
138 GGAAATTGAA
* * * *
148 TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTATGTGAGAATTGTCTCTCCCT
1 TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCT
* * * * *
213 TGGTTGTTGGACGAACTTGCAAACTTGTCAAACTTTTACGAGTTATTTTTTAAATCTGGTTCCTT
66 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTC-GGTTCCTT
* * * *
278 AAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTTTGAACATTCCTTGCGAGGGAAATCGCA
130 AAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGA-GGAAATCGCA
*
343 TCATTTAGTCTAAATAGTTTT
194 TCATTTGGTCTAAATAGTTTT
* * * * * * *
364 TAATTTCGTAAACAAGTTCTGATCATT-AAGTGAAAAACTTATTTACGTGAGAATTATGTCTCTT
1 TCATTTTGTAAACAAGTTTTGATCTTTGAA-TTAAAAACTTATTTACGTGAGAATTGTGTCTCTC
* * * * *
428 TTGGTTCTTGGATGAACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTACAACTTCGGTTCCT
65 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTCGGTTCCT
* * * * * * * *
493 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGT
129 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGC-GAGGAAATCGC
* *
558 ATCATTTGGTCTAAAAAGTTTG
193 ATCATTTGGTCTAAATAGTTTT
* * ** * * * *
580 TCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTTATGCGACAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCT
* *
644 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTTTAAATCTGGTTCCTT
66 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTC-GGTTCCTT
* * * *
708 AAAGTGCTCAAGACAAT-CATTCCTTCGAGTAATTTTCCGAACATTCCATGCGAGGGAAATCGTA
130 AAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGA-GGAAATCGCA
772 TCATTTGGTCTAAATAGTTTT
194 TCATTTGGTCTAAATAGTTTT
* * *
793 TCATTTTGTAAACAAGTTTTGATCTTTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCT
1 TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCT
* * * * * *
858 TGGTTCTTGGACGAAATTCTGAACATGTCGAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTT
66 TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-TTCGGTTCCTT
* * * * * * *
923 AAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCA
130 AAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGC-GAGGAAATCGCA
988 TCATTTGGTCTAAATAGTTTGT
194 TCATTTGGTCTAAATAGTTT-T
* * * *
1010 T-ATTTTGTAAACAAGTCTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCT
1 TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCT
* ** * * **
1074 CGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCT
66 TGGTTGTTGGACGAA-CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AATTCGGTTCCT
* * *
1138 TAAAGTGTTCAAAACGATCTATTCCTTCGAGTAA-TTTTCTGAACATTCCATGCGACGAAAATCG
129 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTC-GAACATTCCATGCGA-GGAAATCG
1202 CATCATTTGGTCTAAATAGTTTT
192 CATCATTTGGTCTAAATAGTTTT
*
1225 TCATTTTGTAAACATGTTTTGATCTT
1 TCATTTTGTAAACAAGTTTTGATCTT
1251 GGTTCTTGGA
Statistics
Matches: 739, Mismatches: 131, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
212 1 0.00
213 62 0.08
214 116 0.16
215 125 0.17
216 427 0.58
217 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (214 bp):
TCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCT
TGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAATTCGGTTCCTTA
AAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGAAATCGCATC
ATTTGGTCTAAATAGTTTT
Found at i:1594 original size:392 final size:392
Alignment explanation
Indices: 855--6057 Score: 1352
Period size: 432 Copynumber: 12.7 Consensus size: 392
845 ATGGTGTCTC
* * * * *
855 TCTTGGTTCTTGGACGAAATTCTGAACATGTCGAACTTTTACAAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAAATTCGATTC
* *
920 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
* * * * * * *
985 GCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTCTTGGTCTTTGAATTAAAAACTTA
131 ACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
*
1050 TTTACATGAGAATTGTTTCTCTCTCGGTTGTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGA
196 TTTACATGACAATTGTTTCTCTCTCGGTTGTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGA
* * * * * * *
1115 GTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAACGATCTATTCCTTCGAGTAATTTTCTGA
261 GTTCTTTCTTAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGA
* * *
1180 ACATTCCATGCGACGAAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTT
326 ACATTCAATGCGACGAAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
1245 GA
391 GA
* * * *
1247 TCTTGGTTCTTGGACGAACTTCCGAGCATTTCAAACTTTTACGAGTTCATTTA-AAGATTCGATT
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAA-ATTCGATT
* *
1311 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGTAAGT
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGT
* *
1376 CACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAGTTTTGGCCTTTGAATTAAAAACTT
130 CACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTT
* * ** * * *
1441 ATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAA-CTTTCGAACTTGTCAAACTTTTAT
195 ATTTACATGACAATTGTTTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTAC
* * *
1505 GAGTTCTTTCTTATATCCGATTCCCTAAAATGTTCAAGACAATGTATTCCTTCGAGTAATTTTCC
259 GAGTTCTTTCTTAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCC
* * *
1570 GAACATTCAATGCGAGGGAAATCGCCTCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTT
324 GAACATTCAATGCGACGAAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTT
1635 TTGA
389 TTGA
* * ** * * ** * *** *
1639 CCTTTGATT-TTAAAACTTATTTATGTGAGAA-TTGTTTCTCTCTTGGTTGTTGGACGAACTTCC
1 TC-TTGGTTCTT-GGAC-GA--AAT-TCCGAACATG--TCAAAC----TT-TT--AC-AAGTT-C
* **
1702 GAACTTGT-TAAACTTTTACGAGTTCTTTTTTAAATTGGGTTCCTTAAAATGTTCAAGATAATCC
49 --A-TT-TATAAA---TT-CGA-TTC---CTTAAA----G-----T---A--TTCAAGACGATCC
* * * * * * * * ** * *
1766 ATTCCTTCGAGTAATTTTCCGAACATTCCATGC-GAGGGAAATCGCATCATTTAGTCTAAATAGT
88 AATCCTTCAAGTAATTTTTCGAACATTACACGCTCA-GGAAGTCACATCATTCGGTATAAAAAGT
* * ** * * * * * * *
1830 TTTTCATTTTGTAAACAAGT-TCTGATCATTAAATGAAAAACTTATTTACGTGAGAATTGTGTAT
152 TTGTCATTTTGAAAACAAGTCT-TGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCT
* ** ** * * *
1894 CTCAT-GGTTCTTGGACGAA-CTTCCGAACTTGTCGAACTTTTACGGGTTCTTT-TATAACTTCG
216 CTC-TCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCT-TAAATCCG
* * * * * ** * * * * *
1956 GTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTCCAAACATT-ACACGC-TCAG
278 ATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCA-ATGCGAC-G
** * * * * *
2019 GTAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCTTGG
341 AAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
* * * **** * ** ** * * ***
2071 TCTTTG-TATT--A-AAAACTTATTTACATG--AGAA-TTGTTTC-TCTCTCGGTTGTCAGAGGA
1 TCTTGGTTCTTGGACGAAA-TTCCGAACATGTCA-AACTT-TTACAAGT-TCATTTAT-AAATTC
* * * * ** * * * *** * *
2128 GTTTCC--GAACT-TGT-AAAACTTTTACGATTACTT-TTTTAAATTCTATTC---C-TTAAAGT
61 GATTCCTTAAAGTAT-TCAAGAC-GAT-CCAATCCTTCAAGT-AATT-T-TTCGAACATTACA-C
* * * ** * * ** * *
2184 GTTCA--AACGATCTA-TTCCTTC-G-AGT--AATTTTCTGAACATTCCATG-CGACGAAATTCA
119 GCTCAGGAA-G-TC-ACATCATTCGGTA-TAAAAAGTT-TG-TCATT--TTGAAAAC--AAGTCT
*** * * * * * * **
2241 CATCATTTG-GTCTAAATAA-TT-TTT-CATTTTGTA-AACATGTTT-TGATCTTGGTTCTTGGA
174 TGGCCTTTGAAT-TAAA-AACTTATTTACA---TG-ACAA-TTGTTTCT-CTCTCGGTTGTCAGA
* * * * * * * * * * *
2300 CAAACTTCTGAACGTT-TCAAACTTTTACGAGTTCATT-TAAAGATTCGGTTCCTTAAAGTATTC
231 GAAGCTTCCGAAC-TTGTAAAACTTTTACGAGTTCTTTCTTAA-ATCCGATTCCCTAAAATGTTC
* * * * * * * * * *
2363 AATACGATCCAATCCTTCAAGCAATTTTTCGAACATT-ACATGC-TCAGGAAGTCGCATCATTTG
294 AAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCA-ATGCGAC-GAAAATCGCATCATTTG
* * * * * * *
2426 GTATAAAAAGTTTGTCATTTTGAAAATAAGTTTTGG
357 CTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
* ** *** ** * * * *** *
2462 CCTTTGAAT-TAAAATCTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCG
1 TC-TTGGTTCTTGGA-CGAAATTCCG-AAC-A-TG--TCAAAC----TT-TT--AC-AAGTT-C-
* * ** * * *** * *
2526 AACTTGTCAAACTTTTACGAGTTATTTTACAATTTTGGTTCCTTA-AAGTATTCAAGACGATCCA
49 -ATTTAT-AAA---TT-CGA-TT-CCTTA-AA--GT-ATTCAAGACGA-TC-----------C-A
* * * * ** * *
2590 ATCCTTCAAGCAATATTTCGAACATTACATGCTAAGGAAGTCGTATCATTTGGTCTAAAAAGTTT
89 ATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTCACATCATTCGGTATAAAAAGTTT
* * * ***
2655 GTCA-TTTGAAAACTAGTTTTAGCCTTTGAATTAAAAACTTATTTATGCGACAATTGTTTCTCTC
154 GTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTCTC
* ** * * * *
2719 TTGGTTGTTGGACGAA-CTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTTTAAATCATG-TTC
219 TCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATC-CGATTC
* * * * * * * * *
2782 CTTAAAATGTTCAAGACAATCCATTCGTTCGAGTAATTTTCTGAATATTCCATGCGATGGAAATC
282 CCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGACGAAAATC
* *
2847 GCATCATTTAG-TCTAAATAGTTTTCCATTTTGTAAACAAGTTCTGA
347 GCATCATTT-GCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
* * * * *
2893 TCATTAAAAGAAAAACTTATTTACGTGA-GAATTAAGTCTCTCTTGGTTCTTGGACAAACTTTCA
1 TC-TT----G-----GTT-CTT--G-GACG-A--AA---T-TC------C--GAACAT---GTCA
* * * * *
2957 AACTTGTCGAACTTTTACGAGTTC-TTCTATAATTTCGGTTCCTTAAAGTATTCAAGATGATGCA
34 AAC---T-----T-TTACAAGTTCATT-TATAAATTCGATTCCTTAAAGTATTCAAGACGATCCA
* * * ** * * * *
3021 ATCCTTCGAGTAATTTTTTGAGCATTACACGCTTGGGAAGTCGCATCATTTGGTCTAAATAGTTT
89 ATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTCACATCATTCGGTATAAAAAGTTT
* * *
3086 GTTATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
154 GTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTCTC
* * * ** * * * *
3151 ACGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCT
219 TCGGTTGTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGATTCCC
* * * * * * *
3216 TAAAGTGTTCAGAACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCGACGAAAATCAC
284 TAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGACGAAAATCGC
* *
3281 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGA
349 ATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
* * * * * * *
3325 TATTGGTTCTTGGACGAACTTCCGAACGTTTCAAACTTTTACGACTTCATTTA-AAGATTCGGTT
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAA-ATTCGATT
** * * * * **
3389 CCTTAAAGTATTCAAGACGAAACAATTCTTGATGCAATTTTTCGAACATTACATTCTCAGGAAGT
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGT
* * * * * * *
3454 CGCATCATTTGGCATAAAAAGTTTGTCATTTTGAAATCAAGTTTTGGCCTCTAAATTAAAAACTT
130 CACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTT
* * ** ** *
3519 ATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGATGAA-CTTTTGAACTTGTCAAACTTTTAC
195 ATTTACATGACAATTGTTTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTAC
** * * * * ** * * * * * *
3583 GAGTTCTTT-TATAAATTAGGTTCCTTAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTT
259 GAGTTCTTTCT-TAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTC
* *** * * * * * * *
3647 TGAACATT-ACATGCTTGGGAAGTTGCATTATTTGATCTAACA-A-TTTTGTCATTCTATAAACA
323 CGAACATTCA-ATGCGACGAAAATCGCATCATTTGCTCTAA-ATAGTTTT-TCATTTTGTAAACA
*
3709 AGTTTTGG
385 AGTTTTGA
* * ** * * ** * *** *
3717 CCTT--TTAATTAAAAACTTATTTATATAAGAA-TTGTTTCTCTCTTGGTTGTTGGACAAACTTC
1 TCTTGGTT-CTT--GGAC-GA--AAT-TCCGAACATG--TCAAAC----TT-TT--AC-AAGTT-
* *
3779 CGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCAGTTCCTTAAAGTGTTCAAGACGATCC
48 C--ATTTAT-AAA---TT-CGA-TTC---CTT-AA---AG-----T--A---TTCAAGACGATCC
* * * * * *
3844 ATTCCTTCGAGTAATTTTTCGAACATTACACGCTCTGGAAGTCGCATCATTTGG-ACTAAATAGT
88 AATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTCACATCATTCGGTA-TAAAAAGT
* * * *
3908 TTGTCATTTTGTAAACAAGTCATGGCCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTC
152 TTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTC
* * * * *
3973 TCTCGGTTGTC-GAAGGATCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATT
217 TCTCGGTTGTCAG-AGAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGATT
* * * * * * * *
4037 CCTTAAAGTGATT-AAAACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAA
281 CCCTAAAATG-TTCAAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGACGAAAA
* * * *
4101 TCACATCATTTGGTCTAAATAGATTTTCATTTTGTAAAGAAGTTTTGA
345 TCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
** ** *** * *
4149 TCTTTCAATTAAAAACTTATTTACGTGAGAATTCTGTCTCTCTTGGTTCTTGCACGAACTTTGGA
1 TC-TT-GGTT-----C-T-TGGAC--GA-AATTC---CGAACAT-G----T-CA--AACTTT-TA
** * * *
4214 -ACTTGTCAAACTTT-TACAAGTTCTTTTAAAGCTTTGGTTCCTTAAAGTATTCAAGCCGATCCA
42 CAAGT-TC--A-TTTATA-AA-TTC-----GAT-------TCCTTAAAGTATTCAAGACGATCCA
* * * ** ** ** * * * * *
4277 ATCCTTCCAGCAA-TTTTCTGAACATTGCATACTTGGGAAGTTGCATCATTTGATCTAACAATTT
89 ATCCTTCAAGTAATTTTTC-GAACATTACACGCTCAGGAAGTCACATCATTCGGTATAAAAAGTT
* * ** * *
4341 TGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTATTTATATGAGAATTGTTTCTCT
153 TGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGTTTCTCT
* ** * *
4406 CTTGGTTGTTGGACGAA-CTTCCGAACTTGTCAAAA-TTTTACGAGTTCTTTCTTAAATTCGGTT
218 CTCGGTTGTCAGA-GAAGCTTCCGAACTTGT-AAAACTTTTACGAGTTCTTTCTTAAATCCGATT
* * * * * * ** *
4469 CCTTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTCCATGCGA-GAGAAA
281 CCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGACGA-AAA
* **
4533 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATCTTTTGA
345 TCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
* * * * ** * * * *
4581 TGTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTACAACTTCGGTTC
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAAATTCGATTC
* *
4646 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
** * * * * *
4711 GTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATCTTA
131 ACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
*** * ** *** *
4775 TTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAA-CTTTTAAACTTGTCAAACTTTTACG
196 TTTACATGACAATTGTTTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACG
* * * * * * * *
4839 AGTTCTTTTTTATATCTGGTT-CCTTAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTTCG
260 AGTTCTTTCTTAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCG
* * * * * *
4903 AACATTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTGAACAAGTTT
325 AACATTCAATGCGACGAAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
4968 TGA
390 TGA
** * ** * *
4971 TCTTTCAAATAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTG-GCTATTGGGCAAAC-TTT-
1 TC-TT--GGT----TC-T-TGGAC--GA-AA-----T-TC-C--GAAC-A-T-GTCAAACTTTTA
* *
5033 CGAACTTGTCAAACTTT-TACAAGTTC--TT--TTAAAGCTTCGGTTCCTTAAAGTATTCAAGCC
42 C-AA-GT-TC--A-TTTATA-AA-TTCGATTCCTTAAAG--T--ATT-C---AAG-A--C--G--
* ** * * * ** ** * * * *
5093 GTCCAATCCTTTGAGCAA-TTTTCTGAACATTGCATGCTTGGGAAGTTGCATCATTTGATCTAAC
84 ATCCAATCCTTCAAGTAATTTTTC-GAACATTACACGCTCAGGAAGTCACATCATTCGGTATAAA
* * * * * **
5157 AATTTTGTCATTTTGTAAAA-AAGTTTTGGCCTTTGAATTTAAAACTTATTTATATAAGGATTGT
148 AAGTTTGTCATTTTG-AAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGACAATTGT
** ** * *
5221 TTCTCTCTTAGTTGTTGGACGAA-CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATC
212 TTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATC
* * * * * * * ** * * *
5285 CGGTTCCTTAAAGTGTTCTAGACGATGC-ATTCCTTCGAGTAAATTTCAAAACATTCCACGC-AA
276 CGATTCCCTAAAATGTTCAAAACAAT-CTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAC
*
5348 GATAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATA-TTTTGA
340 GA-AAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTTGA
* * * * * * * *
5402 TCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTC
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAAATTCGATTC
* * * *
5467 CTTAAAGTATTTAAGACGATCCAATCCTTCAAGAAATATTTT-GAACATTACATGCTCAAGAAGT
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAAT-TTTTCGAACATTACACGCTCAGGAAGT
** * * * * *
5531 CGTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTAAATTAAAAACTT
130 CACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTT
** * * ** *
5595 ATTTACGCGACAATTGTTTCTTTCTTGGTTGTTGGACGAA-CTTCCGAACTTGTCAAACTTTTAC
195 ATTTACATGACAATTGTTTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTAC
* * * *** * *
5659 GAGTTCTTTCTTAAATCCGGTTCCTTAAAGTGTTCTGGACGATC-ATTCCTTCGAGTAATTTTCA
259 GAGTTCTTTCTTAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCC
* * *
5723 AAACATTCCATGCGA-GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATA-
324 GAACATTCAATGCGACGA-AAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACA-AG
5786 TTTTGA
387 TTTTGA
* * * * * * * * * * *
5792 TGTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTC
1 TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAAATTCGATTC
* * * * *
5857 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCAAACATTACATGTTCAAGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
** * * * * **
5922 GTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATTTTA
131 ACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
* * ** *
5986 TTTA-TTCGACAATTGTTTCTCTCTTGGTTGTTGGACGAA-CTTCCGAACTTGTCAAACTTTTAC
196 TTTACAT-GACAATTGTTTCTCTCTCGGTTGTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTAC
*
6049 GGGTTCTTT
259 GAGTTCTTT
6058 TATAAATTCA
Statistics
Matches: 3667, Mismatches: 756, Indels: 778
0.71 0.15 0.15
Matches are distributed among these distances:
384 3 0.00
385 3 0.00
386 13 0.00
387 15 0.00
388 18 0.00
389 15 0.00
390 451 0.12
391 393 0.11
392 756 0.21
393 25 0.01
394 8 0.00
395 3 0.00
396 8 0.00
397 9 0.00
398 11 0.00
399 6 0.00
401 11 0.00
402 5 0.00
403 9 0.00
404 10 0.00
405 12 0.00
406 17 0.00
407 12 0.00
408 12 0.00
409 19 0.01
410 12 0.00
411 11 0.00
412 16 0.00
413 16 0.00
414 15 0.00
415 7 0.00
416 6 0.00
417 15 0.00
418 16 0.00
419 6 0.00
420 6 0.00
421 6 0.00
422 11 0.00
423 6 0.00
424 7 0.00
425 7 0.00
426 1 0.00
427 4 0.00
428 7 0.00
429 58 0.02
430 113 0.03
431 321 0.09
432 976 0.27
433 33 0.01
434 7 0.00
435 12 0.00
436 14 0.00
437 10 0.00
438 5 0.00
439 7 0.00
440 7 0.00
441 11 0.00
442 7 0.00
443 9 0.00
444 4 0.00
445 5 0.00
446 8 0.00
447 4 0.00
448 2 0.00
449 6 0.00
450 3 0.00
453 3 0.00
454 2 0.00
455 3 0.00
456 6 0.00
457 6 0.00
458 3 0.00
460 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (392 bp):
TCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCATTTATAAATTCGATTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACACGCTCAGGAAGTC
ACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
TTTACATGACAATTGTTTCTCTCTCGGTTGTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGA
GTTCTTTCTTAAATCCGATTCCCTAAAATGTTCAAAACAATCTATTCCTTCGAGTAATTTTCCGA
ACATTCAATGCGACGAAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
GA
Found at i:1623 original size:216 final size:215
Alignment explanation
Indices: 1247--2285 Score: 1154
Period size: 216 Copynumber: 4.8 Consensus size: 215
1237 CATGTTTTGA
* * * *
1247 TCTTGGTTCTTGGACGAACTTCCGAGCATT-TCAAACTTTTACGAGTTC-ATTTAAAGATTCGAT
1 TCTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTTTAA-ATTCGAT
* * * * * * * *
1310 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATT-ACATGCTCAGTAA
64 TCCTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCA-ATGC-GAGGAA
* * * * * * * * *
1374 GTCACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAATAAGTTTTGGCCTTTGAATTAAAAAC
127 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAAC
*
1439 TTATTTACGTGACAATTGTTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * * *
1463 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTCTTATATCCGATTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGATTC
* **
1528 CCTAAAATGTTCAAGACAATGTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGGAAATC
66 CTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCAATGCGA-GGAAATC
* * * *
1593 GCCTCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGATTTTAAAACTTA
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
*
1658 TTTATGTGAGAATTGTTTCTC
195 TTTACGTGAGAATTGTTTCTC
* * *
1679 TCTTGGTTGTTGGACGAACTTCCGAACTTGTTAAACTTTTACGAGTTCTTTTTTAAATTGGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGATTC
* *
1744 CTTAAAATGTTCAAGATAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGAGGGAAATC
66 CTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCAATGCGA-GGAAATC
* * * * * *
1809 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTGATCATTAAATGAAAAACTTA
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* *
1874 TTTACGTGAGAATTGTGTATC
195 TTTACGTGAGAATTGTTTCTC
* * * * * * *
1895 TCATGGTTCTTGGACGAACTTCCGAACTTGTCGAACTTTTACGGGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGATTC
* * ** * * * * * *
1960 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTCCAAACATT-ACACGCTCAGGTAGT
66 CTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCA-ATGC-GAGGAAAT
* * ** *
2024 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCTTGGTCTTTGTATTAAAAACTT
129 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
*
2089 ATTTACATGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* ** * ** * *
2111 TCTCGGTTGTCAGAGGAGTTTCCGAACTTGTAAAACTTTTACGA-TTACTTTTTTAAATTCTATT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-CTTTTTTAAATTCGATT
* * * * * *
2175 CCTTAAAGTGTTCAA-ACGATCTATTCCTTCGAGTAATTTTCTGAACATTCCATGCGACGAAATT
65 CCTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGAAA-T
* * *
2239 CACATCATTTGGTCTAAATAATTTTTCATTTTGTAAACATGTTTTGA
129 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
2286 TCTTGGTTCT
Statistics
Matches: 690, Mismatches: 124, Indels: 19
0.83 0.15 0.02
Matches are distributed among these distances:
214 3 0.00
215 79 0.11
216 603 0.87
217 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGATTC
CTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGAAATCG
CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTC
Found at i:2029 original size:824 final size:821
Alignment explanation
Indices: 428--5791 Score: 3440
Period size: 824 Copynumber: 6.5 Consensus size: 821
418 TATGTCTCTT
* * * * *
428 TTGGTTCTTGGATGAACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTACAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCATTTACAAATTCGATTCCT
**
493 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGT
66 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCAC
* *
558 ATCATTTGGTCTAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTT
131 ATCATTCGGTATAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTT
*
623 ATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
196 ACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
* * * * *
688 TTTTTTAAATCTGGTTCCTTAAAGTGCTCAAGACAATCATTCCTTCGAGTAATTTTCCGAACATT
261 TTTCTTAAATCCGATTCCCTAAAATGCTCAAGACAATCATTCCTTCGAGTAATTTTCCGAACATT
* * * *
753 CCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCT
326 CAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCT
*
818 TTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTCTGAACA
391 TTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTCCGAACA
* * * *
883 TGTCGAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCCAATCCT
456 TGTCAAACTTTTACAAGTTCTTTTATAAATTCGGTTCCTTAAAATATTCAAGATAATCCAATCCT
* * *
948 TCGAGTAATTTTTCGAACATTACACGCTCAGGAAGTCGCATCATTTGGTCTAAATAGTTTGTTAT
521 TCGAGTAATTTTCCGAACATTACACGCTCAGGAAATCGCATCATTTAGTCTAAATAGTTTGTTAT
* * * * * *
1013 TTTGTAAACAAGTCTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGT
586 TTTGTAAACAAGTCTTGATCATTAAATGAAAAACTTATTTACATGAGAATTGTGTATCTCTCGGT
* * *
1078 TGTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCTTAAAG
651 TCTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTCGATTCCTTAAAG
* * * ** * * *
1143 TGTTCAAAACGATCTATTCCTTCGAGTAATTTTCTGAACATTCCATGCGACGAAAATCGCATCAT
716 TATTCAAAACGATCCAATCCTTCGAGTAATTTTCCAAACATTACACGCCACGAAAATCGCATCAT
*
1208 TTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATC
781 TTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGATC
* *
1249 TTGGTTCTTGGACGAACTTCCGAGCATT-TCAAACTTTTACGAGTTCATTTA-AAGATTCGATTC
1 TTGGTTCTTGGACGAACTTCCAAAC-TTGTCAAACTTTTACGAGTTCATTTACAA-ATTCGATTC
* *
1312 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCGAACATTACATGCTCAGTAAGTC
64 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTC
1377 ACATCATTCGGTATAAAAAGTTTGTCATTTTGAAAA-TAAGTTTTGGCCTTTGAATTAAAAACTT
129 ACATCATTCGGTATAAAAAGTTTGTCA-TTTGAAAACT-AGTTTTGGCCTTTGAATTAAAAACTT
* * *
1441 ATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTATG
192 ATTTACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
* * *
1506 AGTTCTTTCTTATATCCGATTCCCTAAAATGTTCAAGACAATGTATTCCTTCGAGTAATTTTCCG
257 AGTT-TTTCTTAAATCCGATTCCCTAAAATGCTCAAGACAAT-CATTCCTTCGAGTAATTTTCCG
*
1571 AACATTCAATGCGAGGGAAATCGCCTCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
320 AACATTCAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* ** * * * * * *
1636 TGACCTTTGATTTTAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTC
385 TGACCTTTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTC
* * * * * *
1701 CGAACTTGTTAAACTTTTACGAGTTCTTTTTTAAATTGGGTTCCTTAAAATGTTCAAGATAATCC
450 CGAACATGTCAAACTTTTACAAGTTCTTTTATAAATTCGGTTCCTTAAAATATTCAAGATAATCC
* * * *
1766 ATTCCTTCGAGTAATTTTCCGAACATTCCATGC-GAGGGAAATCGCATCATTTAGTCTAAATAGT
515 AATCCTTCGAGTAATTTTCCGAACATTACACGCTCA-GGAAATCGCATCATTTAGTCTAAATAGT
*
1830 TT-TTCATTTTGTAAACAAGT-TCTGATCATTAAATGAAAAACTTATTTACGTGAGAATTGTGTA
579 TTGTT-ATTTTGTAAACAAGTCT-TGATCATTAAATGAAAAACTTATTTACATGAGAATTGTGTA
** ** * *
1893 TCTCAT-GGTTCTTGGACGAA-CTTCCGAACTTGTCGAACTTTTACGGGTTCTTTTATAACTTCG
642 TCTC-TCGGTTCTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTCG
* * * *
1956 GTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTCCAAACATTACACGCTCA-GG
705 ATTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAGTAATTTTCCAAACATTACACGC-CACGA
* * * * *
2020 TAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTCTTGGTC
769 AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGATC
* ** * *** * *
2073 TTTGTATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTGTCAGAGGAGTTTCCGAAC
1 -TTG-GTT-----C-T-TGGAC----GAA---CTTC-CAAAC--TTGTCA-A--ACTTT---TAC
* * * * *
2138 TTGTAAAACTTTTACGA-TTACTTTTTTAAATTCTATTCCTTAAAGTGTTCAA-ACGATCTATTC
41 --G----A--GTT-C-ATTTAC------AAATTCGATTCCTTAAAGTATTCAAGACGATCCAATC
* * * * * * * *
2201 CTTCGAGTAA-TTTTCTGAACATTCCATGC-GACGAAATTCACATCATTTGGTCTAAATAA---T
90 CTTCAAGCAATTTTTC-GAACATTACATGCTCA-GGAAGTCACATCATTCGGTATAAA-AAGTTT
**
2261 -T--TTT-----C-A----T----TTTG---T--AAAC--A--T----G-----T-TTT-GATCT
152 GTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTTACGCGACAATTGTTTCTCTCT
* * * * * * *
2289 TGGTTCTTGGACAAACTTCTGAACGTT-TCAAACTTTTACGAGTTCATT-TAAAGATTCGGTTCC
217 TGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTT-TTTCTTAA-ATCCGATTCC
* * ** * * * * * * * *
2352 TTAAAGTATTCAATACGATCCAATCCTTCAAGCAATTTTTCGAACATT-ACATGCTCA-GGAAGT
279 CTAAAATGCTCAAGACAAT-CATTCCTTCGAGTAATTTTCCGAACATTCA-ATGC-GAGGGAAAT
* * * * * * * * * *
2415 CGCATCATTTGGTATAAAAAGTTTGTCATTTTGAAAATAAGTTTTGGCCTTTGAATTAAAATCTT
341 CGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAAATAAAAACTT
* * * * * * *
2480 ATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
406 ATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACA
* * * * * ** * *
2545 AGTTATTTTACAATTTTGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATATTT-C
471 AGTTCTTTTATAAATTCGGTTCCTTAAAATATTCAAGATAATCCAATCCTTCGAGTAAT-TTTCC
* * * * * * * * *
2609 GAACATTACATGCTAAGGAAGTCGTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGT-
535 GAACATTACACGCTCAGGAAATCGCATCATTTAGTCTAAATAGTTTGTTATTTTGTAAACAAGTC
* * * * * *** * * * * * **
2672 TTTAGCCTTTGAATTAAAAACTTATTTATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAA-C
600 TTGA-TCATTAAATGAAAAACTTATTTACATGAGAATTGTGTATCTCTCGGTTCTCAGA-GAAGC
* * * * * *
2736 TTCCGAACTTGTCAAACTTTTATGAGTTCTTTTTTAAA-TC-ATGTTCCTTAAAATGTTCAAGAC
663 TTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTCGA--TTCCTTAAAGTATTCAAAAC
* * * ** * * * * * * *
2799 AATCCATTCGTTCGAGTAATTTTCTGAATATTCCATGCGATGGAAATCGCATCATTTAGTCTAAA
726 GATCCAATCCTTCGAGTAATTTTCCAAACATTACACGCCACGAAAATCGCATCATTTGGTCTAAA
* *
2864 TAGTTT-TCCATTTTGTAAACAAGTTCTGATC
791 TAGTTTGT-CATTTTGTAAACATGTTTTGATC
* *
2895 ATTAAAAGAAAAACTTATTTACGTGA-GAATTAAGTCTCTCTTGGTTCTTGGACAAACTTTCAAA
1 -TT----G-----GTT-CTT--G-GACG----AA-------------CTT-------C---CAAA
* * * * * *
2959 CTTGTCGAACTTTTACGAGTTC-TTCTATAATTTCGGTTCCTTAAAGTATTCAAGATGATGCAAT
25 CTTGTCAAACTTTTACGAGTTCATT-TACAAATTCGATTCCTTAAAGTATTCAAGACGATCCAAT
* * * * * ** * * * *
3023 CCTTCGAGTAATTTTTTGAGCATTACACGCTTGGGAAGTCGCATCATTTGGTCTAAATAGTTTGT
89 CCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCACATCATTCGGTATAAAAAGTTTGT
* * * * ** * **
3088 TATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCAC
154 CA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTTACGCGACAATTGTTTCTCTCTT
* * * ** * * * * *
3153 GGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCTTA
218 GGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTCTTAAATCCGATTCCCTA
* * * * * * * *
3218 AAGTGTTC-AGAACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCGACGAAAATCACA
282 AAATGCTCAAG-ACAAT-CATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGGAAATCGCA
*
3282 TCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC-A----TG--------------------TTT
345 TCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAAATAAAAACTTATTT
* * * * * *
3322 ---T--G-A---------TATTGGTTCTTGGACGAACTTCCGAACGTTTCAAACTTTTACGACTT
410 ACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTT
* * * * * * * * *
3372 CATTTAAAGATTCGGTTCCTTAAAGTATTCAAGACGAA-ACAATTCTT-GATGCAATTTTTCGAA
475 CTTTTATAAATTCGGTTCCTTAAAATATTCAAGA-TAATCCAATCCTTCGA-GTAATTTTCCGAA
** * * * * *
3435 CATTACATTCTCAGGAAGTCGCATCATTT-GGCATAAAAAGTTTGTCATTTTG-AAATCAAGTTT
538 CATTACACGCTCAGGAAATCGCATCATTTAGTC-TAAATAGTTTGTTATTTTGTAAA-CAAGTCT
* * * * * * * * * **
3498 TG-GCCTCTAAATTAAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGATGAA-CT
601 TGATCAT-TAAATGAAAAACTTATTTACATGAGAATTGTGTATCTCTCGGTTCTCAGA-GAAGCT
** * * * **
3561 TTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTAGGTTCCTTAAAGTATTCAAGCCGAT
664 TCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTCGATTCCTTAAAGTATTCAAAACGAT
** * * *** * *** * * * * *
3626 ATAATCCTTTGAGCAATTTTTTGAACATTACATGCTTGGGAAGTTGCATTATTTGATCTAACA-A
729 CCAATCCTTCGAGTAATTTTCCAAACATTACACGCCACGAAAATCGCATCATTTGGTCTAA-ATA
* * * *
3690 TTTTGTCATTCTATAAACAAGTTTTGGCCTTTTAATTAAAAAC
793 GTTTGTCATTTTGTAAAC-A----T-G--TTTTGA-T-----C
** * ** *
3733 TTATTTATATAAGAATTGTTTCTCTCTTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTTTTA
1 -------T-T--G----G----T-TCTT-G--GACGAAC-TT---CCAAACTTGTCAAACTTTTA
* * * * *
3798 CGAGTTC-TTT-CTTAAA-TCCAGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATT
40 CGAGTTCATTTAC--AAATTCGA-TTCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATT
* * * * * *
3860 TTTCGAACATTACACGCTCTGGAAGTCGCATCATTTGG-ACTAAATAGTTTGTCATTTTGTAAAC
102 TTTCGAACATTACATGCTCAGGAAGTCACATCATTCGGTA-TAAAAAGTTTGTCA-TTTGAAAAC
* ** * ** * * * * *
3924 AAGTCATGGCCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCTCTCTCGGTTGTCGAAGG
165 TAGTTTTGGCCTTTGAATTAAAAACTTATTTACGCGACAATTGTTTCTCTCTTGGTTGTTGGACG
* * * * * * * * * *
3989 ATCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCTTAAAGTGATTAAAA
230 AACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTCTTAAATCCGATTCCCTAAAATGCTCAAGA
* * * * *
4054 CGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCACATCATTTGGTCTAA
294 CAAT-CATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGGAAATCGCATCATTTGCTCTAA
* * * * **
4119 ATAGATTTTCATTTTGTAAAGAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTCT
358 ATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTCAAATAAAAACTTATTTACGTGAGAATGGT
* * ** * *
4184 GTCTCTCTTGGTTCTTGCACGAACTTTGGAACTTGTCAAACTTTTACAAGTTCTTTTA-AAGCTT
423 GTCTCTCTTGGTTCTTGGACGAAATTCCGAACATGTCAAACTTTTACAAGTTCTTTTATAA-ATT
* * *** * * * * ** **
4248 TGGTTCCTTAAAGTATTCAAGCCGATCCAATCCTTCCAGCAATTTTCTGAACATTGCATACTTGG
487 CGGTTCCTTAAAATATTCAAGATAATCCAATCCTTCGAGTAATTTTCCGAACATTACACGCTCAG
* * * * * * * * *
4313 GAAGTTGCATCATTT-GATCTAACA-ATTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTA
552 GAAATCGCATCATTTAG-TCTAA-ATAGTTTGTTATTTTGTAAACAAGTCTTGATCATTAAATGA
* * * * * **
4376 AAAACTTATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAA-CTTCCGAACTTGTCAAA
615 AAAACTTATTTACATGAGAATTGTGTATCTCTCGGTTCTCAGA-GAAGCTTCCGAACTTGT-AAA
* * * * *
4440 A-TTTTACGAGTTCTTTCT-TAAATTCGGTTCCTTAAAGTGTTCTAGACGATCCATTCCTTCGAG
678 ACTTTTACGAGTTCTTT-TATAAATTCGATTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAG
* * * * *
4503 TAATTTTCAAAACATTCCATGCGA-GAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTG
742 TAATTTTCCAAACATTACACGCCACGA-AAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
4567 TAAACATCTTTTGATG
806 TAAACATGTTTTGATC
* * * * * *
4583 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTACAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCATTTACAAATTCGATTCCT
**
4648 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCGT
66 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCAC
* * *
4713 ATCATTTGGTCTAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAATCTTATTT
131 ATCATTCGGTATAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTT
* ***
4778 ATGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTTAAACTTGTCAAACTTTTACGAGTT
196 ACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
* * * * * * *
4843 CTTTTTTATATCTGGTT-CCTTAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTTCGAACA
261 -TTTCTTAAATCCGATTCCCTAAAATGCTCAAGACAAT-CATTCCTTCGAGTAATTTTCCGAACA
* * * * *
4907 TTCCATGCGAGGGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTGAACAAGTTTTGAT
324 TTCAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGAC
** * * * * *
4972 CTTTCAAATAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTGGCTATTGGGC-AAACTTTCGA
389 CTTTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAA-TTCCGA
* * * ***
5036 ACTTGTCAAACTTTTACAAGTTCTTTTA-AAGCTTCGGTTCCTTAAAGTATTCAAG-CCGTCCAA
453 ACATGTCAAACTTTTACAAGTTCTTTTATAA-ATTCGGTTCCTTAAAATATTCAAGATAATCCAA
* * * * * ** * * *
5099 TCCTTTGAGCAATTTTCTGAACATTGCATGCTTGGGAAGTTGCATCATTT-GATCTAACA-ATTT
517 TCCTTCGAGTAATTTTCCGAACATTACACGCTCAGGAAATCGCATCATTTAG-TCTAA-ATAGTT
* * * ** * * ** * * * * *
5162 TGTCATTTTGTAAAAAAGTTTTGGCCTTTGAATTTAAAACTTATTTATATAAGGATTGTTTCTCT
580 TGTTATTTTGTAAACAAGTCTTGATCATTAAATGAAAAACTTATTTACATGAGAATTGTGTATCT
** * ** * * * *
5227 CTTAGTTGTTGGACGAA-CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTT
645 CTCGGTTCTCAGA-GAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTT-TATAAATTCGATT
* * * * * * * * *
5290 CCTTAAAGTGTTCTAGACGATGCATTCCTTCGAGTAAATTTCAAAACATTCCACG-CAAGATAAA
708 CCTTAAAGTATTCAAAACGATCCAATCCTTCGAGTAATTTTCCAAACATTACACGCCACGA-AAA
* *
5354 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATATTTTGATC
772 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGATC
* * * * *
5404 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCATTTACAAATTCGATTCCT
* * * *
5469 TAAAGTATTTAAGACGATCCAATCCTTCAAGAAATATTTT-GAACATTACATGCTCAAGAAGTCG
66 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAAT-TTTTCGAACATTACATGCTCAGGAAGTCA
* * * *
5533 TATCATTTGGTCTAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTAAATTAAAAACTTATT
130 CATCATTCGGTATAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATT
*
5598 TACGCGACAATTGTTTCTTTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
195 TACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGT
* * * * ** * **
5663 TCTTTCTTAAATCCGGTTCCTTAAAGTGTTCTGGACGATCATTCCTTCGAGTAATTTTCAAAACA
260 T-TTTCTTAAATCCGATTCCCTAAAATGCTCAAGACAATCATTCCTTCGAGTAATTTTCCGAACA
* * *
5728 TTCCATGCGAGAGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATA-TTTTGA
324 TTCAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACA-AGTTTTGA
5792 TGTTGGTTCT
Statistics
Matches: 3725, Mismatches: 555, Indels: 526
0.78 0.12 0.11
Matches are distributed among these distances:
820 6 0.00
821 771 0.21
822 549 0.15
823 613 0.16
824 1061 0.28
825 24 0.01
826 8 0.00
827 3 0.00
828 7 0.00
829 7 0.00
830 6 0.00
831 6 0.00
832 7 0.00
833 4 0.00
834 2 0.00
835 3 0.00
836 5 0.00
837 5 0.00
838 8 0.00
839 1 0.00
840 9 0.00
841 2 0.00
842 6 0.00
843 22 0.01
844 3 0.00
845 5 0.00
846 10 0.00
847 3 0.00
848 4 0.00
849 5 0.00
850 1 0.00
851 2 0.00
852 2 0.00
854 1 0.00
855 3 0.00
856 6 0.00
857 5 0.00
858 6 0.00
859 2 0.00
860 1 0.00
861 2 0.00
862 14 0.00
863 180 0.05
864 321 0.09
865 14 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (821 bp):
TTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCATTTACAAATTCGATTCCT
TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAGTCAC
ATCATTCGGTATAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTATTT
ACGCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT
TTTCTTAAATCCGATTCCCTAAAATGCTCAAGACAATCATTCCTTCGAGTAATTTTCCGAACATT
CAATGCGAGGGAAATCGCATCATTTGCTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCT
TTCAAATAAAAACTTATTTACGTGAGAATGGTGTCTCTCTTGGTTCTTGGACGAAATTCCGAACA
TGTCAAACTTTTACAAGTTCTTTTATAAATTCGGTTCCTTAAAATATTCAAGATAATCCAATCCT
TCGAGTAATTTTCCGAACATTACACGCTCAGGAAATCGCATCATTTAGTCTAAATAGTTTGTTAT
TTTGTAAACAAGTCTTGATCATTAAATGAAAAACTTATTTACATGAGAATTGTGTATCTCTCGGT
TCTCAGAGAAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAAATTCGATTCCTTAAAG
TATTCAAAACGATCCAATCCTTCGAGTAATTTTCCAAACATTACACGCCACGAAAATCGCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACATGTTTTGATC
Found at i:2660 original size:216 final size:214
Alignment explanation
Indices: 2286--3323 Score: 1073
Period size: 216 Copynumber: 4.8 Consensus size: 214
2276 CATGTTTTGA
* * * * *
2286 TCTTGGTTCTTGGACAAACTTCTGAACGTT-TCAAACTTTTACGAGTTCA-TTTAAAGATTCGGT
1 TCTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTT-ATTTTAAA-TTTTGGT
* * * *
2349 TCCTTAAAGTATTCAATACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCAGGAAG
63 TCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAA-TTTTCGAACATTACATGCTAAGGAAG
* * * *
2414 TCGCATCATTTGGTATAAAAAGTTTGTCATTTTGAAAATAAGTTTTGGCCTTTGAATTAAAATCT
127 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACT
2479 TATTTACGTGACAATTGTTTCTC
192 TATTTACGTGACAATTGTTTCTC
2502 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTACAATTTTGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTA-AATTTTGGTTC
* *
2567 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATATTTCGAACATTACATGCTAAGGAAGTC
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAAT-TTTCGAACATTACATGCTAAGGAAGTC
* * * *
2632 GTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTAGCCTTTGAATTAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
2696 TTTATGCGACAATTGTTTCTC
194 TTTACGTGACAATTGTTTCTC
* * **
2717 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTATGAGTTCTTTTTTAAATCAT-GTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-T-TATTTTAAATTTTGGTT
* * * * * * * * * *
2781 CCTTAAAATGTTCAAGACAATCCATTCGTTCGAGTAATTTTCTGAATATTCCATGCGATGGAAAT
64 CCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTC-GAACATTACATGCTAAGGAAGT
* * * ** * * **
2846 CGCATCATTTAGTCTAAATAGTTT-TCCATTTTGTAAACAAGTTCTGATCATTAAAAGAAAAACT
128 CGCATCATTTGGTCTAAATAGTTTGT-CATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACT
* ***
2910 TATTTACGTGAGAATTAAGTCTC
192 TATTTACGTGACAATTGTTTCTC
* * * * * * * *
2933 TCTTGGTTCTTGGACAAACTTTCAAACTTGTCGAACTTTTACGAGTTCTTCTATAATTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTA-AATTTTGGTTC
* * * * * **
2998 CTTAAAGTATTCAAGATGATGCAATCCTTCGAGTAATTTTTTGAGCATTACACGCTTGGGAAGTC
65 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAA-TTTTCGAACATTACATGCTAAGGAAGTC
* * *
3063 GCATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
129 GCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
3128 TTTACATGAGAATTGTTTCTC
194 TTTACGTGACAATTGTTTCTC
** * * * ** * * * *
3149 TCACGGTTGTCGGAGGAGCTTCTAAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCT-ATT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-T-TATTTTAAATTTTGGTT
* * * * * * *
3213 CCTTAAAGTGTTC-AGAACGATCCATTCCTTCGAGTAATTTTCTGAACATTCCATGCGACGAAAA
64 CCTTAAAGTATTCAAG-ACGATCCAATCCTTCGAGTAATTTTC-GAACATTACATGCTAAGGAAG
* * * *
3277 TCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTG
127 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTG
3324 ATATTGGTTC
Statistics
Matches: 680, Mismatches: 125, Indels: 34
0.81 0.15 0.04
Matches are distributed among these distances:
214 10 0.01
215 184 0.27
216 463 0.68
217 18 0.03
218 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (214 bp):
TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTATTTTAAATTTTGGTTCC
TTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCGAACATTACATGCTAAGGAAGTCGC
ATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
TACGTGACAATTGTTTCTC
Found at i:3729 original size:216 final size:215
Alignment explanation
Indices: 3327--4572 Score: 1359
Period size: 216 Copynumber: 5.8 Consensus size: 215
3317 TGTTTTGATA
* * *
3327 TTGGTTCTTGGACGAACTTCCGAACGTT-TCAAACTTTTACGACTTCATTTA-AAGATTCGGTTC
1 TTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGTTC
** * * **
3390 CTTAAAGTATTCAAGACGAAACAATTCTT-GATGCAATTTTTCGAACATTACATTCTCAGGAAGT
64 CTTAAAGTATTCAAGACGATCCAATCCTTCGA-GCAATTTTTCGAACATTACATGCTTGGGAAGT
* * *
3454 CGCATCATTTGGCAT-AAAAAGTTTGTCATTTTG-AAATCAAGTTTTGGCCTCTAAATTAAAAAC
128 CGCATCATTT-G-ATCTAAAAGTTTGTCATTTTGTAAA-CAAGTTTTGGCCTTTGAATTAAAAAC
* *
3517 TTATTTACGTGACAATTGTTTCTCTC
190 TTATTTACATGAGAATTGTTTCTCTC
* ** *
3543 TTGGTTGTTGGATGAACTTTTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTAGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* ** * * *
3608 TAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTTTGAACATTACATGCTTGGGAAGTTGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTTGGGAAGTCGC
* * * * *
3673 ATTATTTGATCTAACAATTTTGTCATTCTATAAACAAGTTTTGGCCTTTTAATTAAAAACTTATT
131 ATCATTTGATCTAA-AAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATT
* *
3738 TATATAAGAATTGTTTCTCTC
195 TACATGAGAATTGTTTCTCTC
* * *
3759 TTGGTTGTTGGACAAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCAGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTTCC
* * * *
3823 TTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTACACGCTCT-GGAAGTC
65 TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCT-TGGGAAGTC
**
3887 GCATCATTTGGA-CTAAATAGTTTGTCATTTTGTAAACAAGTCATGGCCTTTGAATTAAAAACTT
129 GCATCATTT-GATCTAAA-AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
3951 ATTTGCATGAGAATTGTTTCTCTC
192 ATTTACATGAGAATTGTTTCTCTC
* * * * * * * **
3975 TCGGTTGTCGAAGGATCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTAAATTCTATTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* * * * ** * *
4040 TAAAGTGATT-AAAACGATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCA
66 TAAAGT-ATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTTGGGAAGTCG
* * ** *
4104 CATCATTTGGTCTAAATAGATTT-TCATTTTGTAAAGAAGTTTTGATCTTTCAATTAAAAACTTA
130 CATCATTTGATCTAAA-AG-TTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* * *
4168 TTTACGTGAGAATTCTGTCTCTC
193 TTTACATGAGAATTGTTTCTCTC
* * ** * * *
4191 TTGGTTCTTGCACGAACTTTGGAACTTGTCAAACTTTTACAAGTTCTTTTA-AAGCTTTGGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGTTCC
* * * * *
4255 TTAAAGTATTCAAGCCGATCCAATCCTTCCAGCAA-TTTTCTGAACATTGCATACTTGGGAAGTT
65 TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTC-GAACATTACATGCTTGGGAAGTC
* **
4319 GCATCATTTGATCTAACAATTTTGTCATTTTGTAAACAAGTTTTGTTCTTTGAATTAAAAACTTA
129 GCATCATTTGATCTAA-AAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
*
4384 TTTATATGAGAATTGTTTCTCTC
193 TTTACATGAGAATTGTTTCTCTC
*
4407 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCT-TAAATTCGGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTTCC
* * * * * * ** * *
4471 TTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAA-TTTTCAAAACATTCCATGCGAGAGAAATC
65 TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTC-GAACATTACATGCTTGGGAAGTC
* *
4535 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 GCATCATTTGATCTAAA-AGTTTGTCATTTTGTAAACA
4573 TCTTTTGATG
Statistics
Matches: 862, Mismatches: 145, Indels: 46
0.82 0.14 0.04
Matches are distributed among these distances:
214 2 0.00
215 22 0.03
216 818 0.95
217 20 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTTGGGAAGTCGC
ATCATTTGATCTAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTT
ACATGAGAATTGTTTCTCTC
Found at i:4719 original size:176 final size:176
Alignment explanation
Indices: 4407--4740 Score: 460
Period size: 176 Copynumber: 1.9 Consensus size: 176
4397 TGTTTCTCTC
*
4407 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTAAATTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTAAATTCGGTTCCT
* * * * * * *
4472 TAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTCCATGCGAGAGAAATCGC
66 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCAAAACATTACATGCCAGAGAAATCGC
* *
4537 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATCTTTTGATG
131 ATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATCTTTTGATG
* * *
4583 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTATGAGTTC-TT-TTACAACTTCGGTTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTA-AA-TTCGGTTC
* *
4646 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTC-GAACATTACATGCTCAG-GAAG
64 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAA-TTTTCAAAACATTACATGC-CAGAGAAA
*
4709 TCGTATCATTTGGTCTAAAAAGTTTGTCATTT
127 TCGCATCATTTGGTCTAAAAAGTTTGTCATTT
4741 GAAAACTAGT
Statistics
Matches: 138, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
174 3 0.02
175 4 0.03
176 124 0.90
177 7 0.05
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (176 bp):
TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAATTTTACGAGTTCTTTCTTAAATTCGGTTCCT
TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCAAAACATTACATGCCAGAGAAATCGC
ATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATCTTTTGATG
Found at i:4969 original size:215 final size:215
Alignment explanation
Indices: 4583--5393 Score: 865
Period size: 215 Copynumber: 3.8 Consensus size: 215
4573 TCTTTTGATG
* * * *
4583 TTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTATGAGTTCTTTTACAA-CTTCGGTTCC
1 TTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA-AATCTTCGGTTCC
* * * *
4647 TTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTC-GAACATTACATGCTCA-GGAAGT
65 TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAA-TTTTCAGAACATTCCATGC-AAGGGAAAT
* * * * *
4710 CGTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATCTT
128 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAA-CTT
* *
4774 ATTTATGCGACAATTGTTTCTCTC
192 ATTTATGTGAGAATTGTTTCTCTC
** *
4798 TTGGTTGTTGGACGAACTTTTAAACTTGTCAAACTTTTACGAGTTCTTTTTTATATC-T-GGTTC
1 TTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC--TTTTAAATCTTCGGTTC
* * * * *
4861 CTTAAA-TGTTCAAGACAATCCATTCCTTCGAGTAATTTTTC-GAACATTCCATGCGAGGGAAAT
64 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAA-TTTTCAGAACATTCCATGCAAGGGAAAT
* * ** * *
4924 CACATCATTTGGTCTAAATAGTTTTTCATTTTGTGAACAAGTTTTGATCTTTCAAATAAAAACTT
128 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTT-GAATTAAAACTT
* *
4989 ATTTACGTGAGAATTCTTTCTCTC
192 ATTTATGTGAGAATTGTTTCTCTC
* * * * * *
5013 TTGGCTATTGGGCAAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTAAAGCTTCGGTTCCT
1 TTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAATCTTCGGTTCCT
* * * * ** * *
5078 TAAAGTATTCAAGCCG-TCCAATCCTTTGAGCAATTTTCTGAACATTGCATGCTTGGGAAGTTGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCAGAACATTCCATGCAAGGGAAATCGC
* *
5142 ATCATTTGATCTAACA-A-TTTTGTCATTTTGTAAAAAAGTTTTGGCCTTTGAATTTAAAACTTA
131 ATCATTTGGTCTAA-ATAGTTTT-TCATTTTGTAAACAAGTTTTGGCCTTTGAA-TTAAAACTTA
* * *
5205 TTTATATAAGGATTGTTTCTCTC
193 TTTATGTGAGAATTGTTTCTCTC
*
5228 TTAGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATC--CGGTTC
1 TTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTC-TT-TTAAATCTTCGGTTC
* * * * * * * * **
5291 CTTAAAGTGTTCTAGACGATGCATTCCTTCGAGTAAATTTCAAAACATTCCACGCAAGATAAATC
64 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCAGAACATTCCATGCAAGGGAAATC
5356 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
5394 TATTTTGATC
Statistics
Matches: 488, Mismatches: 90, Indels: 35
0.80 0.15 0.06
Matches are distributed among these distances:
213 8 0.02
214 83 0.17
215 301 0.62
216 80 0.16
217 16 0.03
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (215 bp):
TTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAAATCTTCGGTTCCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCAGAACATTCCATGCAAGGGAAATCGC
ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAACTTATTT
ATGTGAGAATTGTTTCTCTC
Found at i:5540 original size:176 final size:175
Alignment explanation
Indices: 5226--5561 Score: 412
Period size: 176 Copynumber: 1.9 Consensus size: 175
5216 ATTGTTTCTC
* *
5226 TCTTAGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
1 TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
* * * * *
5291 CTTAAAGTGTTCTAGACGATGCATTCCTTCGAGTAAATTTCAAAACATTCCACGCAAGATAAATC
66 CTTAAAGTATTCTAGACGATCCAATCCTTCAAGTAAATTTCAAAACATTACACGCAAGA-AAATC
* *
5356 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATATTTTGA
130 GCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTGA
* * *
5402 TCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAACTTTTACGAGTTC-TT-TTACAACTTCGGT
1 TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTA-AA-TCCGGT
*** *
5465 TCCTTAAAGTATT-TAAGACGATCCAATCCTTCAAG-AAATATTTTGAACATTACATGCTCAAG-
64 TCCTTAAAGTATTCT-AGACGATCCAATCCTTCAAGTAAAT-TTCAAAACATTACA--CGCAAGA
* *
5527 AAGTCGTATCATTTGGTCTAAAAAGTTTGTCATTT
125 AAATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
5562 GAAAACTAGT
Statistics
Matches: 136, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
174 3 0.02
175 9 0.07
176 119 0.88
178 5 0.04
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (175 bp):
TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
CTTAAAGTATTCTAGACGATCCAATCCTTCAAGTAAATTTCAAAACATTACACGCAAGAAAATCG
CATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTGA
Found at i:6264 original size:216 final size:215
Alignment explanation
Indices: 5794--7254 Score: 1422
Period size: 216 Copynumber: 6.8 Consensus size: 215
5784 TATTTTGATG
* * * * * *
5794 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* * * **
5859 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTT-TCAAACATTACATG-TTCAAGAAGTC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACAAGCTT-GGGAAGTC
* * * * * *
5922 GTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATTTTA
129 GCATCATTTGATCTAAAAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAA-CTTA
* *
5986 TTTA-TTCGACAATTGTTTCTCTC
193 TTTACAT-GAGAATTGTTTCTCTC
* *
6009 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGGGTTCTTTTATAAATTCAGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* ** * * *
6074 TAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTCTGAACATTACAAACTTGGGAAGTTGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCTTGGGAAGTCGC
* *
6139 ATCATTTGATC-AAAGAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTGTAAACATAT
131 ATCATTTGATCTAAA-AATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATT-AAAACTTAT
*
6203 TTATATGAGAATTGTTTCTCTC
194 TTACATGAGAATTGTTTCTCTC
* * *
6225 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* ** * * * * * * *** * *
6290 TAAAATGCTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTTCATGCGACGAAAATCGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCTTGGGAAGTCGC
* * ** * * *
6355 ATCATTT-AGTCTAAATAGTTTT-TCATTTTGAAAACAAGTTTTGATCATTAAATGAAAAACTTA
131 ATCATTTGA-TCTAAA-AATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAAT-TAAAACTTA
* * *
6418 TTTACGTGAGAATTATGTCTCTC
193 TTTACATGAGAATTGTTTCTCTC
* * ** * *
6441 TTGGTTCTTGGACAAACTTCTAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* * * * * *
6506 TAAAGTATTCAAGATGATGCAATCCTTCGAGTAATTTT-TCGAGCATTACACGCTCGGGAAGTCG
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACAAGCTTGGGAAGTCG
* * * * * * *
6570 CATAAATTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTGGCCTTTGAATTAAAAACTTAT
130 CATCATTTGATCTAAAAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATT-AAAACTTAT
6635 TTACATGAGAATTGTTTCTCTC
194 TTACATGAGAATTGTTTCTCTC
* * * * * * * * **
6657 TCGGTTGTCGGAGGAGCTTCCGAACTAGTAAAACTTTTATGAGTTCTTTTTTAAATTCTATTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
* * * * * * * *
6722 TAAAGTGTTC-AGAACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATG-TGGGGGAAATC
66 TAAAGTATTCAAG-ACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCT-TGGGAAGTC
* * *** * *
6785 GCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAAGTTTTGATATTTCAGATAAAAACTT
129 GCATCATTTGATCTAAA-AATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGA-ATTAAAACTT
* * * *
6849 ATTTACGTGAGAATTCTGTCTCTA
192 ATTTACATGAGAATTGTTTCTCTC
* * * *
6873 TTGGTTCTATGG-CGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTA-AAGCTTCGATTC
1 TTGGTTGT-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA-ATTCGGTTC
* * * *
6936 CTTAAAGTATTTAAGCCGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTTGGGAAGTT
64 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCTTGGGAAGTC
*
7001 GCATCATTTGATCTAACAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACTTA
129 GCATCATTTGATCTAAAAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAA-TTAAAACTTA
* *
7066 TTTATATGAGGATTGTTTCTCTC
193 TTTACATGAGAATTGTTTCTCTC
* * * *
7089 TTAGTTGTTGGACGAACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTTCC
* * * * ** * * ** ** *
7153 TTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTCCACGCGAGATAAATCG
65 TTAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCTTGGGAAGTCG
* *
7218 CATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACA
130 CATCATTTGATCTAAA-AATTTTGTCATTTTGTAAACA
7255 TATTTTGATC
Statistics
Matches: 1006, Mismatches: 212, Indels: 55
0.79 0.17 0.04
Matches are distributed among these distances:
214 3 0.00
215 142 0.14
216 831 0.83
217 30 0.03
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACAAGCTTGGGAAGTCGC
ATCATTTGATCTAAAAATTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAACTTATTT
ACATGAGAATTGTTTCTCTC
Found at i:6603 original size:432 final size:428
Alignment explanation
Indices: 5794--8509 Score: 1818
Period size: 432 Copynumber: 6.4 Consensus size: 428
5784 TATTTTGATG
* * * ** * *
5794 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAACT-TTGGTTCC
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCT-GTTCC
* * * * * * * *
5858 TTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCAAACATTACATGTTCAAG-AAGTC
65 TTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATG--CGAGAAAATC
* * * * ** * * **
5922 GTATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATTTTA
128 GCATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCATT-AAATAAAAACTTA
* * * * * *
5986 TTTA-TTCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACG
192 TTTACGT-GAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACG
* * * * *
6050 GGTTCTTTTATAAATTCAGTTCCTTAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTCTG
256 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCTTCGAGCAATTTTCTG
* *
6115 AACATTACAAACTTGGGAAGTTGCATCATTTGATCAAAGAATTTTGTCATTTTGTAAACAAGTTT
321 AACATTACAAGCTTGGGAAGTTGCATCATTTGATCTAA-AATTTTGTCATTTTGTAAACAAGTTT
*
6180 TGGCCTTTGAATTGTAAACATATTTATATGAGAATTGTTTCTCTC
385 TGGCCTTTGAATT-TAAACTTATTTATATGAGAATTGTTTCTCTC
6225 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
* * * * *
6290 TAAAATGCTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTTCATGCGACGAAAATCGC
66 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGA-GAAAATCGC
*
6355 ATCATTTAGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCATTAAATGAAAAACTTATT
130 ATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCATTAAAT-AAAAACTTATT
* * *
6420 TACGTGAGAATTATGTCTCTCTTGGTTCTTGGACAAACTTCTAAACTTGTCGAACTTTTACGAGT
194 TACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGT
** * * *
6485 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATGCAATCCTTCGAGTAATTTT-TCGAG
259 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCTTCGAGCAATTTTCT-GAA
* * * * * * * * *
6549 CATTACACGCTCGGGAAGTCGCATAAATTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTG
323 CATTACAAGCTTGGGAAGTTGCATCATTTGATCTAAA-ATTTTGTCATTTTGTAAACAAGTTTTG
* *
6614 GCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
387 GCCTTTGAATT-TAAACTTATTTATATGAGAATTGTTTCTCTC
* * * * * * * * *
6657 TCGGTTGTCGGAGGAGCTTCCGAACTAGTAAAACTTTTATGAGTTCTTTTTTAAATTCTATTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
* * * *
6722 TAAAGTGTTC-AGAACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGTGGGGGAAATCG
66 TAAAGTGTTCAAG-ACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATG-CGAGAAAATCG
* *
6786 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGAT-ATTTCAGATAAAAACTTA
129 CATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCA-TT-AAATAAAAACTTA
* *
6850 TTTACGTGAGAATTCTGTCTCTATTGGTTCTATGG-CGAACTT-TCGAACTTGTCAAACTTTTAC
192 TTTACGTGAGAATTATGTCTCTCTTGGTTCT-TGGACGAACTTCT-GAACTTGTCAAACTTTTAC
* * *
6913 GAGTTCTTTTA-AAGCTTCGATTCCTTAAAGTATTTAAGCCGATCCAATCCTTCGAGCAATTTTC
255 GAGTTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCTTCGAGCAATTTTC
*
6977 TGAACATTACATGCTTGGGAAGTTGCATCATTTGATCTAACAATTTTGTCATTTTGTAAACAAGT
319 TGAACATTACAAGCTTGGGAAGTTGCATCATTTGATCTAA-AATTTTGTCATTTTGTAAACAAGT
*
7042 TTTGGCCTTTGAATTTAAAACTTATTTATATGAGGATTGTTTCTCTC
383 TTTGGCCTTTGAATTT-AAACTTATTTATATGAGAATTGTTTCTCTC
* * * * *
7089 TTAGTTGTTGGACGAACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
* * *
7154 TAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTCCACGCGAGATAAATCGC
66 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAGA-AAATCGC
* * *** **
7219 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATA-TTTTGATCTTGGTTCTTGGACGAACT
130 ATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACA-AGTTTTGATCAT--TAAAT--AAAAACT
**** * ** * ** * * * * *
7283 TCCGAACTTGTCAA--A-GT-T-T-TACGAGTTCTTTTAC-AATTTC-G-A-TTCCTTAAAGTAT
190 TATTTACGTGAGAATTATGTCTCTCT-TG-GTTCTTGGACGAACTTCTGAACTT-GTCAAACTTT
* * ** ** * **** * * *
7338 T-CAAG-AC-GATCCAA--TC-CTTCAAGCAA-TATTTCGAA--CGTTAC-ATGC-TC-AGGAA-
252 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTC-AAGCCGATACAATCCTTCGAGCAAT
* * * * *** * * *
7390 -GTC-GTATCATT---TGGTCTAAAAAGTTTG--TCA-TT--TCAAAACTAGTTTTGGC-CTTTG
315 TTTCTG-AACATTACAAGCT-TGGGAAG-TTGCATCATTTGATCTAAA--A-TTTTGTCATTTTG
* ** * * ** * * * * ***
7444 AATTAAA-AACTTATT--TATGTGACAATT--GTTTCTCTCT-TG-G--TTGTTGGACGAAC
374 ---TAAACAAGTT-TTGGCCTTTGA-ATTTAAACTTATTTATATGAGAATTGTT--TCTCTC
* *** * * * * * * *** ** * ****
7497 TTCCGAACTT-GTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCTTTAAAATGTTCAAGACA
1 TT-GGTTGTTGGACGAAC--TTCCGA--AC-TTGTCAAA--CT-TT-TACGAGTTCTTTTTTA-A
* ** * *** * * ** * *
7561 ATCC-ATTCCTTCGAGTAATT--TTCCGA-ACATTCCATGCGACG-AA-AATCGC-ATCATT-TA
55 ATCCTGTTCCTTAAAGT-GTTCAAGACGATCCATTCC-TTCGA-GTAATTTTC-CAAACATTCCA
* * *** * * *
7618 -GTCTA-AATAGT-TTTTCATTT--TGTAAACAAGTTCTGATCA--TT----A-AA----TGA--
116 TG-CGAGAA-AATCGCATCATTTGGTCTAAA-TAGTT-T-TTCATTTTGAAAACAAGTTTTGATC
* **
7665 A--AAA------CTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGACAAACTTCCAAACT
176 ATTAAATAAAAACTTATTTACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCTGAACT
* ** *
7722 TGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATGCAATCCT
241 TGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCT
* * * * * * * * *
7787 TCGAGTAATTTT-TCGAGCATTACACGCTCGCGAAGTCGCATCATTTGGTCTAAATAGTTTGTTA
306 TCGAGCAATTTTCT-GAACATTACAAGCTTGGGAAGTTGCATCATTTGATCTAAA-ATTTTGTCA
* * *
7851 TTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTC
369 TTTTGTAAACAAGTTTTGGCCTTTGAATT-TAAACTTATTTATATGAGAATTGTTTCTCTC
* * ** * * * * *
7912 TCGGTTGTCGGGGGAGCTTCCGAACTTGTAAAACTTTTATGAGTTCTTTTTTAAATTCTATTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
* * * * *
7977 TAAAGTGTTCAAAACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGTGAGGGAAATCAC
66 TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGA-GAAAATCGC
** *
8042 ATCATTTGGTCTAAATAGTTTTTCATTTTTTAAACAAGTTTTGATCTTTCAAATAAAAACTTATT
130 ATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCATT-AAATAAAAACTTATT
* * * *
8107 TACTTGAGAATTTTGTCTCTCTTGGTTCTTGGGCGAACTTTTGAACTTGTCAAACTTTTACGAGT
194 TACGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGT
* *
8172 TTTTTTA-AAGCTTCGGTTCCTTAAAGTATTCAAGCCGATCCAATCCTTCGAGCAATTTTCTGAA
259 TCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCTTCGAGCAATTTTCTGAA
* * * * * *
8236 TATTACATGCTTGGGGAGTTGTATCAGTTGATCTGACAATTTTGTCATTTTGTAAACAAGTTTTG
323 CATTACAAGCTTGGGAAGTTGCATCATTTGATCT-AAAATTTTGTCATTTTGTAAACAAGTTTTG
* *
8301 GCCTTTGAATTAAATACTTATTTATATGAGGATTGTTTCTCTC
387 GCCTTTGAATTTAA-ACTTATTTATATGAGAATTGTTTCTCTC
** ** * * *
8344 TTGGTTGTTGGATTAACTTTTGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGGTTCCT
1 TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
* *
8409 TAAAGTGTTCTAA-ACAATCCATTCCTTCGAGTAATTTTCAAAACATTCCATGCGAGATAAATCG
66 TAAAGTGTTC-AAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAGA-AAATCG
*
8473 CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 CATCATTTGGTCTAAATAGTTTTTCATTTTGAAAACA
8510 TATTTTAATC
Statistics
Matches: 1736, Mismatches: 394, Indels: 309
0.71 0.16 0.13
Matches are distributed among these distances:
388 9 0.01
390 1 0.00
391 2 0.00
392 9 0.01
393 7 0.00
394 1 0.00
395 7 0.00
396 5 0.00
397 1 0.00
398 3 0.00
400 4 0.00
401 8 0.00
402 8 0.00
403 3 0.00
404 2 0.00
405 11 0.01
406 24 0.01
407 19 0.01
408 28 0.02
409 17 0.01
410 41 0.02
411 30 0.02
412 32 0.02
413 45 0.03
414 17 0.01
415 26 0.01
416 19 0.01
417 23 0.01
418 11 0.01
419 2 0.00
420 3 0.00
421 9 0.01
422 7 0.00
423 4 0.00
425 1 0.00
426 6 0.00
427 5 0.00
428 8 0.00
429 4 0.00
430 8 0.00
431 151 0.09
432 1083 0.62
433 19 0.01
434 1 0.00
435 12 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (428 bp):
TTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCT
TAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAGAAAATCGCA
TCATTTGGTCTAAATAGTTTTTCATTTTGAAAACAAGTTTTGATCATTAAATAAAAACTTATTTA
CGTGAGAATTATGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
TTTTATAACTTCGGTTCCTTAAAGTATTCAAGCCGATACAATCCTTCGAGCAATTTTCTGAACAT
TACAAGCTTGGGAAGTTGCATCATTTGATCTAAAATTTTGTCATTTTGTAAACAAGTTTTGGCCT
TTGAATTTAAACTTATTTATATGAGAATTGTTTCTCTC
Found at i:7031 original size:648 final size:647
Alignment explanation
Indices: 5794--7254 Score: 1649
Period size: 648 Copynumber: 2.3 Consensus size: 647
5784 TATTTTGATG
* * * *
5794 TTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTTGGTTCCT
1 TTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * * *
5859 TAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCAAACATTACATGTTCAAGAAGTCGT
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCAAACATTACACGCTCGAGAAGTCGC
* * * * * **
5924 ATCATTTGGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAATTTTATT
131 ATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTGGCCTTTGAATTAAAAACTTATT
* * * * * *
5988 TATTCGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGGGT
196 TAATCGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCGAACTAGTAAAACTTTTACGAGT
* * * *
6053 TCTTTTATAAATTCAGTTCCTTAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTCTGAAC
261 TCTTTTATAAATTCAGTTCCTTAAAGTATTCAAGACGATACAATCCTTCGAGCAATTTTCCGAAC
* * * *
6118 ATTACAAACTTGGGAAGTTGCATCATTTGATCAAAGAATTTTGTCATTTTGTAAACAAGTTTTGG
326 ATTACAAACTGGGGAAATCGCATCATTTGATCAAAGAATTTTGTCATTTTGTAAACAAGTTTTGA
* * ** * * * * *
6183 CCTTTGAATTGTAAACATATTTATATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGA
391 CATTTCAATTAAAAACATATTTACATGAGAATTCTGTCTCTATTGGTTCTTGGACGAACTTCCGA
* * *
6248 ACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTCCTTAAAATGCTCAAGACAATCCATT
456 ACTTGTCAAACTTTTACGAGTTC-TTTTTAAAGCCTGTTCCTTAAAATACTCAAGACAATCCAAT
* *
6313 CCTTCGAGTAATTTTCCGAACATTTCATGCGACGAAAATCGCATCATTTAGTCTAAATAGTTTTT
520 CCTTCGAGCAATTTTCCGAACATTACATGCGACGAAAATCGCATCATTTAGTCTAAATAGTTTTT
* *
6378 CATTTTGAAAACAAGTTTTGATCATTAAATGAAAAACTTATTTACGTGAGAATTATGTCTCTC
585 CATTTTGAAAACAAGTTTTGACCATTAAATGAAAAACTTATTTACATGAGAATTATGTCTCTC
* *
6441 TTGGTTCTTGGACAAACTTCTAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
1 TTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * * * *
6506 TAAAGTATTCAAGATGATGCAATCCTTCGAGTAATTTTTCGAGCATTACACGCTCGGGAAGTCGC
66 TAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCAAACATTACACGCTCGAGAAGTCGC
* *
6571 ATAAATTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTGGCCTTTGAATTAAAAACTTATT
131 ATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTGGCCTTTGAATTAAAAACTTATT
* * * *
6636 TACAT-GAGAATTGTTTCTCTCTCGGTTGTCGGAGGAGCTTCCGAACTAGTAAAACTTTTATGAG
196 TA-ATCGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCGAACTAGTAAAACTTTTACGAG
* * * * *
6700 TTCTTTTTTAAATTCTA-TTCCTTAAAGTGTTC-AGAACGATCCATTCCTTCGAGTAATTTTCCG
260 TTCTTTTATAAATTC-AGTTCCTTAAAGTATTCAAG-ACGATACAATCCTTCGAGCAATTTTCCG
* ** * * *
6763 AACATT-CCATGTGGGGGAAATCGCATCATTTGGTCTAAATAGTTTT-TCATTTTGTAAACAAGT
323 AACATTACAAACT-GGGGAAATCGCATCATTTGATC-AAAGAATTTTGTCATTTTGTAAACAAGT
* * *
6826 TTTGATATTTCAGA-TAAAAACTTATTTACGTGAGAATTCTGTCTCTATTGGTTCTATGG-CGAA
386 TTTGACATTTCA-ATTAAAAACATATTTACATGAGAATTCTGTCTCTATTGGTTCT-TGGACGAA
* * * * * *
6889 CTTTCGAACTTGTCAAACTTTTACGAGTTC-TTTTAAAGCTTCGATTCCTTAAAGTATTTAAGCC
449 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTAAAGCCT-G-TTCCTTAAAATACTCAAGAC
* * *** * * *
6953 GATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTTGGGAAGTTGCATCATTT-GATCTAA
512 AATCCAATCCTTCGAGCAATTTTCCGAACATTACATGCGACGAAAATCGCATCATTTAG-TCTAA
* * * * ** * *
7017 CA-A-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACTTATTTATATGAGGATT
576 -ATAGTTTT-TCATTTTGAAAACAAGTTTTGACCATTAAATGAAAAACTTATTTACATGAGAATT
* *
7080 GTTTCTCTC
639 ATGTCTCTC
* * * * * *
7089 TTAGTTGTTGGACGAACTT-TCGAATTTGTCAAACTTTTACGAGTTCTTTCT-TAAATCCGGTTC
1 TTGGTTCTTGGACGAACTTCT-AAACTTGTCAAACTTTTACGAGTTCTTT-TATAACTTCGGTTC
* * * * ** * *
7152 CTTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAA-TTTTCAAAACATTCCACGCGAGATAAAT
64 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTC-AAACATTACACGCTCGAGAAGT
7216 CGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTAAACA
128 CGCATCATTTGGTCTAAATAGTTTGTT-ATTTTGTAAACA
7255 TATTTTGATC
Statistics
Matches: 676, Mismatches: 121, Indels: 33
0.81 0.15 0.04
Matches are distributed among these distances:
646 9 0.01
647 153 0.23
648 498 0.74
649 16 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (647 bp):
TTGGTTCTTGGACGAACTTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTTCAAACATTACACGCTCGAGAAGTCGC
ATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAAGTATTGGCCTTTGAATTAAAAACTTATT
TAATCGACAATTGTTTCTCTCTCGGTTGTCGGACGAACTTCCGAACTAGTAAAACTTTTACGAGT
TCTTTTATAAATTCAGTTCCTTAAAGTATTCAAGACGATACAATCCTTCGAGCAATTTTCCGAAC
ATTACAAACTGGGGAAATCGCATCATTTGATCAAAGAATTTTGTCATTTTGTAAACAAGTTTTGA
CATTTCAATTAAAAACATATTTACATGAGAATTCTGTCTCTATTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAACTTTTACGAGTTCTTTTTAAAGCCTGTTCCTTAAAATACTCAAGACAATCCAATC
CTTCGAGCAATTTTCCGAACATTACATGCGACGAAAATCGCATCATTTAGTCTAAATAGTTTTTC
ATTTTGAAAACAAGTTTTGACCATTAAATGAAAAACTTATTTACATGAGAATTATGTCTCTC
Found at i:7401 original size:176 final size:176
Alignment explanation
Indices: 7087--7422 Score: 410
Period size: 176 Copynumber: 1.9 Consensus size: 176
7077 ATTGTTTCTC
* * * *
7087 TCTTAGTTGTTGGACGAACTTTCGAATTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
1 TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGATTC
* * * * * * * *
7152 CTTAAAGTGTTCTAGACGATCCATTCCTTCGAGTAATTTTCAAAACATTCCACGCGAGATAAATC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCAAAACATTACACGCCAGAGAAATC
* *
7217 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATATTTTGA
131 GCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTGA
* * *
7263 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGTTTTACGAGTTC-TT-TTACAATTTCGAT
1 TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTA-AA-TCCGAT
* * *
7326 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATATTTC-GAACGTTACATGCTCAG-GA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAAT-TTTCAAAACATTACACGC-CAGAGA
* *
7389 AGTCGTATCATTTGGTCTAAAAAGTTTGTCATTT
127 AATCGCATCATTTGGTCTAAAAAGTTTGTCATTT
7423 CAAAACTAGT
Statistics
Matches: 134, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
174 3 0.02
175 4 0.03
176 121 0.90
177 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (176 bp):
TCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAAATCCGATTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCAAAACATTACACGCCAGAGAAATC
GCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTGA
Found at i:7733 original size:216 final size:216
Alignment explanation
Indices: 7263--8509 Score: 1321
Period size: 216 Copynumber: 5.8 Consensus size: 216
7253 CATATTTTGA
* ** * *
7263 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGTTTTACGAGTTCTTTTACAATTTCGATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * * * *
7328 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATATTT-CGAACGTTACATGC-TCAGGAAG
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAAT-TTTCCGAACATTACATGCGAC-GGAAA
* * * ** *
7391 TCGTATCATTTGGTCTAAAAAGTTTGTCA-TTTCAAAACTAGTTTTGGCCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
** *
7455 TATTTATGTGACAATTGTTTCTC
194 TATTTACATGAGAATTGTTTCTC
* * *
7478 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCTGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * * * * * *
7543 TTTAAAATGTTCAAGACAATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGCGACGAAAATC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACGGAAATC
* * ** * * *
7608 GCATCATTTAGTCTAAATAGTTTTTCATTTTGTAAACAAGTTCTGATCATTAAATGAAAAACTTA
131 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* * *
7673 TTTACGTGAGAATTATGTCTC
196 TTTACATGAGAATTGTTTCTC
* * * * *
7694 TCTTGGTTCTTGGACAAACTTCCAAACTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * * * * * *
7759 CTTAAAGTATTCAAGATGATGCAATCCTTCGAGTAATTTTTCGAGCATTACACGC-TCGCGAAGT
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACG-GAAAT
*
7823 CGCATCATTTGGTCTAAATAGTTTGTT-ATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACT
130 CGCATCATTTGGTCTAAATAGTTT-TTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
7887 TATTTACATGAGAATTGTTTCTC
194 TATTTACATGAGAATTGTTTCTC
* * * ** * * * **
7910 TCTCGGTTGTCGGGGGAGCTTCCGAACTTGTAAAACTTTTATGAGTTCTTTTTTAAATTCTATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * * * * *
7975 CTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAATTTTCCGAACATTCCATGTGAGGGAAATC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACGGAAATC
* * ** * *
8040 ACATCATTTGGTCTAAATAGTTTTTCATTTTTTAAACAAGTTTTGATCTTTCAAATAAAAACTTA
131 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
*
8105 TTTACTTGAGAATT-TTGTCTC
196 TTTACATGAGAATTGTT-TCTC
* **
8126 TCTTGGTTCTTGGGCGAACTTTTGAACTTGTCAAACTTTTACGAG-T-TTTTTTAAAGCTTCGGT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAA--TTCGGT
* * * * *** * *
8189 TCCTTAAAGTATTCAAGCCGATCCAATCCTTCGAGCAATTTTCTGAATATTACATGCTTGGGGAG
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACGGAAA
* * * * * *
8254 TTGTATCAGTTGATCTGACAAT--TTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAATA
129 TCGCATCATTTGGTCT-A-AATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAA
* *
8317 CTTATTTATATGAGGATTGTTTCTC
192 CTTATTTACATGAGAATTGTTTCTC
* ** ** * * *
8342 TCTTGGTTGTTGGATTAACTTTTGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
* * * ** * *
8407 CTTAAAGTGTTCTAA-ACAATCCATTCCTTCGAGTAATTTTCAAAACATTCCATGCGA-GATAAA
66 CTTAAAGTATTC-AAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACG-GAAA
8470 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
129 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACA
8510 TATTTTAATC
Statistics
Matches: 842, Mismatches: 171, Indels: 37
0.80 0.16 0.04
Matches are distributed among these distances:
214 15 0.02
215 136 0.16
216 671 0.80
217 9 0.01
218 11 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCGACGGAAATC
GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
TTTACATGAGAATTGTTTCTC
Found at i:8664 original size:176 final size:176
Alignment explanation
Indices: 8342--8677 Score: 394
Period size: 176 Copynumber: 1.9 Consensus size: 176
8332 ATTGTTTCTC
* ** * *
8342 TCTTGGTTGTTGGATTAACTTTTGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGGTTC
1 TCTTGGTTCTTGGAAGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGATTC
* * * * *
8407 CTTAAAGTGTTCTAAACAATCCATTCCTTCGAGTAATTTTCAAAACATTCCATGCGAGATAAATC
66 CTTAAAGTATTCTAAACAATCCAATCCTTCAAGTAATTTTCAAAACATTACATGCGACATAAATC
* * *
8472 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATATTTTAA
131 GCATAATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTAA
* * *
8518 TCTTGGTTCTTGGAAGAACTTTCGAACTTTTCAAACTTTTACGAGTTC-TT-TTACAACTTCGAT
1 TCTTGGTTCTTGGAAGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTCTTA-AA-TCCGAT
* * *
8581 TCCTTAAATTATTC-AAGACGATCCAATCCTTCAAGTAATTTTTC-AAACATTACATGC-TCATG
64 TCCTTAAAGTATTCTAA-ACAATCCAATCCTTCAAGTAA-TTTTCAAAACATTACATGCGACAT-
* * *
8643 AAGTCGTATAATTTTGTCTAAAAAGTTTGTCATTT
126 AAATCGCATAATTTGGTCTAAAAAGTTTGTCATTT
8678 GAAAACTAGT
Statistics
Matches: 133, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
174 3 0.02
175 8 0.06
176 117 0.88
177 5 0.04
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (176 bp):
TCTTGGTTCTTGGAAGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTCTTAAATCCGATTC
CTTAAAGTATTCTAAACAATCCAATCCTTCAAGTAATTTTCAAAACATTACATGCGACATAAATC
GCATAATTTGGTCTAAAAAGTTTGTCATTTTGTAAACATATTTTAA
Found at i:8976 original size:216 final size:216
Alignment explanation
Indices: 8518--9338 Score: 885
Period size: 216 Copynumber: 3.8 Consensus size: 216
8508 CATATTTTAA
* * *
8518 TCTTGGTTCTTGGAAGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTCGATTC
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTTACAACTTCGATTC
* * * * * *
8583 CTTAAATTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCAAACATTACATGCTCATGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
* * * * * * *
8648 GTATAATTTTGTCTAAAAAGTTTGTCA-TTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTA
131 GCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* * *
8712 TTTATGCGACAATTGTTTCTC
196 TTTACGTGAGAATTGTTTCTC
*
8733 TCTTAGTTGC-TGGATA-AACTTCCGAACTTGTCAAACTTTTACGAGTTATTTGTTA-AA--TCT
1 TCTTGGTT-CTTGGA-AGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTT-TTACAACTTC-
* * * * * * * * *
8793 GGTTCCTTGAAGTGTTCAAGACAATTCATTCCTTCGAGTAATTTTTCGAACATTCCATGC-GAGG
61 GATTCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCA-G
* * * *
8857 GAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTCAATTAAA
125 GAAATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAA
*
8922 AACTTATTTACGTGAGAATTGTGTCTC
190 AACTTATTTACGTGAGAATTGTTTCTC
* * * *
8949 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTTTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTTACAACTTCGATTC
* * *
9014 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTCCGAACATTACACGCTCAGGAAGT-
66 CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
* * *
9078 -CATCATTTAGTCTAAATAATTTGTCATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
131 GCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* *
9142 TTTACATGAGAATTATTTCTC
196 TTTACGTGAGAATTGTTTCTC
* * ** * * * *
9163 TCTCGGTTGTCAGAGGAGCTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTTTA-AA-TTCTAT
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAG-T-TTTTTTACAACTTCGAT
* * * * *
9226 TCCTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAA-TTTCCTGAACATTCCATGCT-ACGCA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCC-GAACATTACATGCTCA-GGA
** * * *
9289 AATTTCATCATTTCGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGA
127 AATCGCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGA
9339 TCTTGGTTCT
Statistics
Matches: 508, Mismatches: 79, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
213 6 0.01
214 172 0.34
215 126 0.25
216 198 0.39
217 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (216 bp):
TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTTACAACTTCGATTC
CTTAAAGTATTCAAGACGATCCAATCCTTCGAGTAATTTTCCGAACATTACATGCTCAGGAAATC
GCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTC
Found at i:9319 original size:430 final size:430
Alignment explanation
Indices: 8518--11183 Score: 1157
Period size: 433 Copynumber: 6.3 Consensus size: 430
8508 CATATTTTAA
* * *
8518 TCTTGGTTCTTGGAAGAACTTTCGAACTTTTCAAACTTTTACGAGTTCTTTTACAACTTCGATTC
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGATTC
* * * *
8583 CTTAAATTATTCAAGACGATCCAATCCTTCAAGTAATTTTTCAAACATTACATGCTCATGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTACACGCTCAGGAAGTC
* * *
8648 GTATAATTTTGTCTAAAAAGTTTGTCATTTGAAAACTAGTTTTGGCCTTTGAATTAAAAACTTAT
131 G-ATAATTTAGTCTAAAAAGTTTGTCATTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTAT
** * * * * *
8713 TTATGCGACAATTGTTTCTCTCTTAGTTGCTGGATAAACTTCCGAACTTGTCAAACTTTTACGAG
195 TTACACGACAATTATTTCTCTCTCAGTTGCTAGAGAAACTTCCGAACTTGTAAAACTTTTACGAG
* * * * *
8778 TTATTTGTTAAATCTGGTTCCTTGAAGTGTTCAAGACAATTCATTCCTTCGAGTAATTTTTCGAA
260 TTATTTGTTAAATCTGATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGTAATTTCTCGAA
* * *
8843 CATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
325 CATTCCATGCGACGCAAATCGCATCATTTCGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
8908 ATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
390 ATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
* * * *
8949 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACAAGTTTTTTTATAACTTCGGTTC
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGATTC
* * *
9014 CTTAAAGTATTCAAGATGATCCAATCCTTCGAGTAATTTTCCGAACATTACACGCTCAGGAAGTC
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTACACGCTCAGGAAGTC
* *
9079 -ATCATTTAGTCTAAATAA-TTTGTCATTTTGTAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
131 GATAATTTAGTCTAAA-AAGTTTGTCA-TTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTA
* * * * *
9142 TTTACATGAGAATTATTTCTCTCTCGGTTG-TCAGAGGAGCTTCCGAACTTGTAAAACTTTTACG
194 TTTACACGACAATTATTTCTCTCTCAGTTGCT-AGAGAAACTTCCGAACTTGTAAAACTTTTACG
* * *
9206 AGTTCTTTTTTAAATTCT-ATTCCTTAAAGTGTTCAAAACGATCCATTCCTTCGAGTAATTTC-C
258 AGTTATTTGTTAAA-TCTGATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGTAATTTCTC
* ** *
9269 TGAACATTCCATGCTACGCAAATTTCATCATTTCGTCTAAATAGTTTTTCATTTTGTAAACATGT
322 -GAACATTCCATGCGACGCAAATCGCATCATTTCGTCTAAATAGTTTTTCATTTTGTAAACAAGT
** **** * *
9334 TTTGATCTTGGTTC--TTGGACGAACTTCCGGACGTTTCA-AACT-T-T-T-
386 TTTGATC-T--TTCAATT--AAAAACTTATTTACG--TGAGAATTGTGTCTC
* * * ** * * * * ** * *
9379 AC--GAGTTCATT-TAATG-A-TTCGGTTCCT-T-AAAGTATT-CAAG-AC-GATCCAA--TC-C
1 TCTTG-GTTC-TTGGAA-GAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGA
**** * * * * * * * * * * *
9431 TTCAAGCAATTTTTCGA-AC-AT-TACATGC-TC-AGGAA--TT-CACATCATT---TGGTATAA
63 TTCCTTAAAGTATTCAAGACGATCCA-ATCCTTCAAGTAATTTTCCA-AACATTACACGCT-CAG
* * * ** * *
9485 AAAGTTTG-TCATTT--TGAAAACAAGTTTTGGCCTTTG-----AA----T-----------TAA
125 GAAG-TCGATAATTTAGTCTAAA-AAG-TTTGTCATTTGAAAACAAGTCTTGGCCTTTGAATTAA
** * ** * * * *
9527 AAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACG-AACTTTCGAACTTGTCAAAC
187 AAACTTATTTACACGACAATTATTTCTCTCTCAGTTGCTAGA-GAAACTTCCGAACTTGTAAAAC
* * * ** * ** * * *
9591 TTTTACGAGTTCTTT-TATAAAT-TCGGTTCCTTAAAGTATTCAAGCCGATATAATCCTTTGAGC
251 TTTTACGAGTTATTTGT-TAAATCT-GATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGT
* *** * * * *
9654 AATTT-TCTGAACATTACATGCTTGGGAAGTTGCATGATTT-GATCTAACA-A-TTTTGTCATTT
314 AATTTCTC-GAACATTCCATGCGACGCAAATCGCATCATTTCG-TCTAA-ATAGTTTT-TCATTT
** * * ** *
9715 TGTAAACAAGTTTTGGCCTTTGAATTGAAAACTTATTTATATGAGAATTGTTTCTC
375 TGTAAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
* * * * * *
9771 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTA-TA-TCCGGT
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTC-TT-TTACAACTTCGAT
* * ** * * * * * *
9834 TCCTTAAAATGTTCAAGATAATCTATTCCTTCGAGTAATTTTCCGAACATT-CAATGC-GAGGGA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTAC-ACGCTCA-GGA
* * * * * * *
9897 AATCGTATCATTT-GCTCTAAATAGTTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAA
127 AGTCG-ATAATTTAG-TCTAAAAAG-TTTGTCA-TTTGAAAACAAGTCTTGGCCTTTGAATTAAA
* ** * * ** * * *
9961 AACTTATTTA-AGTGGGAATTGTTTCTCACTTGGTTGTTGGACG-AACTTCCGAACTTGTCAAAC
188 AACTTATTTACA-CGACAATTATTTCTCTCTCAGTTGCTAGA-GAAACTTCCGAACTTGTAAAAC
* ** * * *
10024 TTTTACGAGTTCTTT-TTCAAACTCT-ATTCCTTAAAGTGTTCAAAATTATCCATTTCGTCGAGC
251 TTTTACGAGTTATTTGTT-AAA-TCTGATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGT
* * * * * ** * * * *
10087 AATTTTTTGAACATTACATGC-TCTGGAAGCCGCATCATTTGGTCTAAAAAGTTTGTCCTTTTGT
314 AATTTCTCGAACATTCCATGCGAC-GCAAATCGCATCATTTCGTCTAAATAGTTTTTCATTTTGT
* * * * *
10151 AAATAGGTTTT-AGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
378 AAACAAGTTTTGA-TCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
* * * * **
10204 TCTTGGTTGTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTTTTAA-TTCAGA-
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTC-TTTTACAACTTC-GAT
* * * * * * * *
10267 TCCTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGC-GAGGGAA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTACACGCTCA-GG-A
* * * * * * * * **
10331 AATCGCATCATTTGGTCTGAATAGTTTTTCAGTTTGTAAACAAGTTTTGATCTTTGAATTAAAAA
127 AGTCG-ATAATTTAGTCTAAAAAGTTTGTCA-TTTGAAAACAAGTCTTGGCCTTTGAATTAAAAA
** * * * * ** * * * *
10396 CTTATTTACGTGAGAATTGTGTCTCACTTGGTT-CGTGGAGGAACTTTCGAACTTGTAGAACTTT
190 CTTATTTACACGACAATTATTTCTCTCTCAGTTGC-TAGAGAAACTTCCGAACTTGTAAAACTTT
* * * * * * * * * * *
10460 TACGGGTTCTTT-TATAACT-TCGGTTCCTTAAAATATTGAAGACGATCCAATCCTTCGAGCAAT
254 TACGAGTTATTTGT-TAAATCT-GATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGTAAT
* * * *** ** * * *
10523 TTTTCGAACAATACATGCTTGGGTAGTCACATCATTTGGTCTGAAA-AGTTTTTCATTTTGTAAA
317 TTCTCGAACATTCCATGCGACGCAAATCGCATCATTTCGTCT-AAATAGTTTTTCATTTTGTAAA
** * *
10587 CAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
381 CAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
* * * ** **
10637 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAGGAGTTCTTTTTTTAA-TTCAGA-
1 TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTC-TTTTACAACTTC-GAT
* * * * * * * * *
10700 TCCTTAAAGTGTTTAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGC-GAGGGAA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTACACGCTCA-GG-A
* * * * * * * ** * ***
10764 AATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAGATTTTTTTATCTTTGAATTAAAAA
127 AGTCG-ATAATTTAGTCTAAAAAGTTTGTCA-TTTGAAAACAAGTCTTGGCCTTTGAATTAAAAA
* ** * * ** * * ** **
10829 CATT-TGTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACG-AACTTTTGAACTTGTCGAACTT
190 C-TTATTTACACGACAATTATTTCTCTCTCAGTTGCTAGA-GAAACTTCCGAACTTGTAAAACTT
* * * * * * * ** * * * *
10892 TTACGACTT-CTT-TTATAGCTTCGGTTTCTTAAAGTACTT-AAGCCGATCGAATCCTTCGAGCA
253 TTACGAGTTATTTGTTAAATC-T-GATTCCTTAAAGT-GTTCAAAACAATCCATTCCTTCGAGTA
* * * * ** * *
10954 ATTT-TCCGAACATTACATGC-TCGGGAAGTCGCAAAATTTGGTCTAAAAAGTTTTTCATTTTGT
315 ATTTCT-CGAACATTCCATGCGAC-GCAAATCGCATCATTTCGTCTAAATAGTTTTTCATTTTGT
** * * * * *
11017 AAACAAGTTTTGGCCTTTGAATTCACAAGTTATTTACGTGAGAATTGTTTCTC
378 AAACAAGTTTTGATCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
* * * * ** * * *
11070 TCTTGG-TCATTGGACGAACTTTCGAACTTCTCAAACTTTTACGAGTTCTTTTTTAAATTTGGTT
1 TCTTGGTTC-TTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGATT
* * *
11134 CCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATT
65 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATT
11184 CCATGCGAAT
Statistics
Matches: 1814, Mismatches: 296, Indels: 248
0.77 0.13 0.11
Matches are distributed among these distances:
387 2 0.00
388 3 0.00
389 9 0.00
390 2 0.00
391 11 0.01
392 166 0.09
393 8 0.00
394 7 0.00
395 1 0.00
396 6 0.00
397 3 0.00
398 1 0.00
400 1 0.00
401 2 0.00
402 10 0.01
403 2 0.00
404 4 0.00
405 4 0.00
406 4 0.00
407 2 0.00
408 7 0.00
409 4 0.00
410 2 0.00
411 16 0.01
412 15 0.01
413 21 0.01
414 7 0.00
416 4 0.00
417 3 0.00
418 7 0.00
419 1 0.00
420 10 0.01
421 2 0.00
422 1 0.00
423 3 0.00
425 4 0.00
426 6 0.00
427 1 0.00
428 7 0.00
429 28 0.02
430 204 0.11
431 126 0.07
432 26 0.01
433 1015 0.56
434 42 0.02
435 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (430 bp):
TCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACTTTTACAAGTTCTTTTACAACTTCGATTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGTAATTTTCCAAACATTACACGCTCAGGAAGTC
GATAATTTAGTCTAAAAAGTTTGTCATTTGAAAACAAGTCTTGGCCTTTGAATTAAAAACTTATT
TACACGACAATTATTTCTCTCTCAGTTGCTAGAGAAACTTCCGAACTTGTAAAACTTTTACGAGT
TATTTGTTAAATCTGATTCCTTAAAGTGTTCAAAACAATCCATTCCTTCGAGTAATTTCTCGAAC
ATTCCATGCGACGCAAATCGCATCATTTCGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
TCTTTCAATTAAAAACTTATTTACGTGAGAATTGTGTCTC
Found at i:9499 original size:176 final size:175
Alignment explanation
Indices: 9195--9513 Score: 394
Period size: 176 Copynumber: 1.8 Consensus size: 175
9185 CGAACTTGTA
* * * * *
9195 AAACTTTTACGAGTTCTTTTTTAAATTCTATTCCTTAAAGTGTTCAAAACGATCCATTCCTTCGA
1 AAACTTTTACGAGTTC-TATTTAAATTCGATTCCTTAAAGTATTCAAAACGATCCAATCCTTCAA
* * * * * *
9260 GTAATTTCCTGAACATTCCATGCTACGCAAATTTCATCATTTCGTCTAAATAGTTTTTCATTTTG
65 GCAATTTCCTGAACATTACATGCTACGCAAATTACATCATTTCGTATAAAAAGTTTGTCATTTTG
* *
9325 TAAACATGTTTTGATCTTGGTTCTTGGACGAACTTCCGGACGTTTC
130 AAAACAAGTTTTGATCTTGGTTCTTGGACGAACTTCCGGACGTTTC
* *
9371 AAACTTTTACGAGTTC-ATTTAATGATTCGGTTCCTTAAAGTATTCAAGACGATCCAATCCTTCA
1 AAACTTTTACGAGTTCTATTTAA--ATTCGATTCCTTAAAGTATTCAAAACGATCCAATCCTTCA
* * *
9435 AGCAATTT-TTCGAACATTACATGCT-CAG-GAATTCACATCATTTGGTATAAAAAGTTTGTCAT
64 AGCAATTTCCT-GAACATTACATGCTAC-GCAAATT-ACATCATTTCGTATAAAAAGTTTGTCAT
9497 TTTGAAAACAAGTTTTG
126 TTTGAAAACAAGTTTTG
9514 GCCTTTGAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
174 5 0.04
175 6 0.05
176 109 0.91
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (175 bp):
AAACTTTTACGAGTTCTATTTAAATTCGATTCCTTAAAGTATTCAAAACGATCCAATCCTTCAAG
CAATTTCCTGAACATTACATGCTACGCAAATTACATCATTTCGTATAAAAAGTTTGTCATTTTGA
AAACAAGTTTTGATCTTGGTTCTTGGACGAACTTCCGGACGTTTC
Found at i:9713 original size:216 final size:215
Alignment explanation
Indices: 9339--17316 Score: 5724
Period size: 216 Copynumber: 36.8 Consensus size: 215
9329 CATGTTTTGA
* * * * *
9339 TCTTGGTTCTTGGACGAACTTCCGGACGTT-TCAAACTTTTACGAGTTCATTTA-ATGATTCGGT
1 TCTTGGTTGTTGGACGAACTTTCGAAC-TTGTCAAACTTTTACGAGTTCTTTTATA-AATTCGGT
* *
9402 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTT-TCGAACATTACATGCTCA-GGA
64 TCCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCT-AGGGA
* * * * *
9465 ATTCACATCATTTGGTATAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAA
127 AGTCGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAA
*
9530 CTTATTTACGTGACAATTGTTTCTC
191 CTTATTTACGTGAGAATTGTTTCTC
9555 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * ** * * *
9620 CTTAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTCTGAACATTACATGCTTGGGAAGTT
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * *
9685 GCATGATTTGATCTAACAA-TTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTGAAAACTT
131 GCATCATTTGGTCTAA-AAGTTTT-TCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
**
9749 ATTTATATGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * *
9771 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCT-TATATCCGGTT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTT
* ** * * * * * *
9835 CCTTAAAATGTTCAAGATAATCTATTCCTTCGAGTAATTTTCCGAACATT-CAATGCGAGGGAAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTAC-ATGCTAGGGAAG
* * *
9899 TCGTATCATTTGCTCTAAATAGTTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAAC
129 TCGCATCATTTGGTCTAAA-AG-TTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
* *
9964 TTATTTAAGTGGGAATTGTTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * **
9988 ACTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTT-TCAAACTCTATT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTAT-AAATTCGGTT
* ** * * * * ** *
10052 CCTTAAAGTGTTCAAAATTATCCATTTCGTCGAGCAATTTTTTGAACATTACATGCTCTGGAAGC
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGT
* * * * *
10117 CGCATCATTTGGTCTAAAAAGTTTGTCCTTTTGTAAATAGGTTTTAGCCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
10182 ATTTACGTGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * * *
10204 TCTTGGTTGTTGGACGAAC-TTCTGAACTTGTCAAACTTTTACGAGTTCTTTTTTTAATTCAGAT
1 TCTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * *
10268 CCTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTAC-GAACATTCCATGCGAGGGAAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTT-CTGAACATTACATGCTAGGG-AA
* * * **
10332 ATCGCATCATTTGGTCTGAATAGTTTTTCAGTTTGTAAACAAGTTTTGATCTTTGAATTAAAAAC
128 GTCGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
*
10397 TTATTTACGTGAGAATTGTGTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * *
10421 ACTTGGTTCG-TGGAGGAACTTTCGAACTTGT-AGAACTTTTACGGGTTCTTTTATAACTTCGGT
1 TCTTGGTT-GTTGGACGAACTTTCGAACTTGTCA-AACTTTTACGAGTTCTTTTATAAATTCGGT
* * * * * *
10484 TCCTTAAAATATTGAAGACGATCCAATCCTTCGAGCAATTTT-TCGAACAATACATGCTTGGGTA
64 TCCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAA
*
10548 GTCACATCATTTGGTCTGAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
128 GTCGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
10613 TTATTTACGTGAGAATTGTTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * * *
10637 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAGGAGTTCTTTTTTTAATTCAGATC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * * *
10702 CTTAAAGTGTTTAAGATGATCCATTCCTTCAAGTAATTTTAC-GAACATTCCATGCGAGGGAAAA
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTT-CTGAACATTACATGCTAGGG-AAG
* ** ***
10766 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAGATTTTTTTATCTTTGAATTAAAAACA
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC-
*
10831 TT-TGTACGTGAGAATTGTTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * ** *
10854 TCTTGGTTGTTGGACGAACTTTTGAACTTGTCGAACTTTTACGACTTCTTTTATAGCTTCGGTTT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * *
10919 CTTAAAGTACTT-AAGCCGATCGAATCCTTCGAGCAATTTTCCGAACATTACATGCTCGGGAAGT
66 CTTAAAGT-GTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGT
** * * *
10983 CGCAAAATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTCACAAGTT
130 CGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
11048 ATTTACGTGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
** * * *
11070 TCTTGGTCATTGGACGAACTTTCGAACTTCTCAAACTTTTACGAGTTCTTTTTTAAATTTGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * ** * * *** *
11135 CTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAATAAAATC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * ** * ** **
11200 GCATCATTTGGTCTAAGTAGTTTTTCATTTTGTAAACATGTTTTGATCTTGGTTCTTGGATGAAC
131 GCATCATTTGGTCTAA-AAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTG-AATT--AAAAAC
* * *
11265 TTCCGATCTT--TTCA-AACTT-TTATGAGT-
192 TT---AT-TTACGTGAGAA-TTGTT-T--CTC
* * * * * * * ** *
11292 TCTT-TTATAGCTTCGGTACAAAAAGTTT-G-TCATTTTGAAAACAAGTTTT-GGCCTTTTATTT
1 TCTTGGT-T-G-TT-GG-AC--GAACTTTCGAAC-TTGT-CAAAC---TTTTACGAGTTCT-TTT
* ** * * * ** ** * ** * * * *
11353 AAAAACTT-TTTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGATGAACTTTCGA--ACTTGTC
53 ATAAA-TTCGGTT-CCTTA-AA--G--TGT-TC-AAGACGATCCA--ATCCTTCGAGCAATTTTC
* * * **** * * * * ** *
11415 -AAACTTTTACGAGTTCTTTTTTTAATTCAG-ATCCTTAAAATGTTC-AAGA-TGATCCATTCCT
107 TGAAC-ATTAC-A-TGC--TAGGGAAGTC-GCATCATT----TGGTCTAAAAGTTTTTCATT--T
* ** * * *** * * * * *
11476 T-CAAGTAA-TTTTACGAACATTCTATGCGAGGGAAAATCGCATCATTT-GGTCTA-AATAGTTT
160 TGTAAACAAGTTTT--G-GC---CT-T-TGAATTAAAA--AC-TTATTTACGT-GAGAATTGTTT
11537 -T-
213 CTC
** ** * ** * * *
11538 TCATT--TTG-TAAAC-ATGTTTTGATTTTGAATTAAAAACAGTTTTACGTGAGAATTGTTTCTC
1 TC-TTGGTTGTTGGACGAACTTTCGAACTTG---T-CAAAC--TTTTAC--GAG--TTCTTT-TA
* * * * ** * *
11599 T--CTT-GGTT-CTTGGACGAACT-TTCGA-ACTTG-TCGAA--CTTTTATG-ACTTCTT-TTAT
54 TAAATTCGGTTCCTT--A--AAGTGTTCAAGAC--GATCCAATCCTTCGA-GCAATT-TTCTGA-
* * * ** * * ** *** *
11653 AGC-TT-CGGTTCCTTA---AAGT-AC-TCAAGCTGATCCAAACCTTCGAGCAATTTT-TCGAAC
110 A-CATTAC--ATGC-TAGGGAAGTCGCATC-ATTTGGTCTAAAAGTT-TTTC-ATTTTGT-AAAC
* *** ** * * * * ** *
11710 ATGACAT-G-CTCGGGAAGT---CACTTTATTT-GGTCTA-AAAAGTTTGT-
167 AAGTTTTGGCCT-TTGAATTAAAAAC-TTATTTACGT-GAGAATTGTTTCTC
* ** * * ** * * * *
11754 TATT--TTG-TAAAC-AAGTTTTGGCCTTTGAATTAAAAAATTATTTACGTGAGAATTATTTCTC
1 TCTTGGTTGTTGGACGAACTTTCGAAC-TTG---T--CAAACT-TTTAC--GAG--TTCTTT-TA
* * ** * * ** * ** *
11815 T--CTT-GG-TCGTTGGA-TGAACTTC-CGAACTTGA-CAAACTTTTTTGAGTTATTTT-TTAA-
54 TAAATTCGGTTCCTTAAAGTG---TTCAAG-AC--GATCCAA-TCCTTCGAGCAATTTTCTGAAC
*** * * * *** * * * *
11871 ATCTGGTTCCTTAAAGTGTTCAAGACG-ATCCATTCCTTCGAGTAA-TTTTCCAAACATTCCATG
112 AT-TACATGC-T--AG-G--GAAGTCGCAT-CATTTGGTCTA-AAAGTTTT----TCATT--TTG
* * * ***** * * * * * *
11934 CAAGAGAAATAGCATCATTTG-GTCTAAATAGTT-TTTCATTTCGT-A-AACATGTTT-TGA
162 TAA-ACAAGTTTTGGCCTTTGAAT-TAAAAACTTATTT-A---CGTGAGAA-TTGTTTCT-C
* * * * * **
11991 TCTTGGTTCTTGGACGAACTTCCGATCTTTTCAAACTTTTATGAGTTCTTTTATAGCTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * *
12056 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCTCA-GGAAGT
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCT-AGGGAAGT
* * * * *
12120 CGCATCATTTGTTATAAAAAGTTTGTCATTTTGAAAACAAGTTTTGACCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
12185 ATTTACATGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* *
12207 TCTTGGTTGTTGGACGAAC-TTCGAAACTTGTCAAACTTTTACGATTTCTTTT-TCCAA-T---T
1 TCTTGGTTGTTGGACGAACTTTCG-AACTTGTCAAACTTTTACGAGTTCTTTTAT-AAATTCGGT
* ** * * * * ** *
12266 T-CTTAAAGTGTTCAAGACGATCCATTCCTTCGAATAATTTTCCGAACATTCCGTGCGAGATAAA
64 TCCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAG
* * **
12330 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTTTAAACATGTTTTGATCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
12395 TATTTACGTGAGAATTGTTTCTC
193 TATTTACGTGAGAATTGTTTCTC
* * * * * * * * * **
12418 CCTTGGATCTTGGTTC-AACTTCCGAACTTGACGAACTTTTATGAGTTATTTTATAGCTTCGGTT
1 TCTTGGTTGTTGG-ACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * *
12482 CCTTAAAGTATTCAACACGATCCAAT-CTCTCAAGCAATTTT-TCAAACATTACAAGCTAGGGAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCT-TCGAGCAATTTTCT-GAACATTACATGCTAGGGAA
* ** * * *
12545 GTCGTATCATTTGGTCTAAAAAGTTTGGCGTTTTGTAAACAAGTTTTGGCCTTTGGATTAAAACC
128 GTCGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
* * * *
12610 TTAGTTATGGGAGAATTATTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* * * *
12634 TCTTGGTTGTTGGACGAACTTACGAACATGTCAAACTTTTACAAGTTCTTTCT-TAAATCCGGTT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAAATTCGGTT
* ** * * * ** * * *
12698 TCTTAAAGCATTCTAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAGGGAAAT
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGT
* * * **
12763 CACATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
12828 ATTTGCGTGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * * * * * * * * * *
12850 CCTTGGTTCTTGAACGACCATCCGAACTTGTCGAACTGTTACTAGTTCTTTTATAACTTCGATTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * *
12915 CTTAAAGTATTCAAGACGATCCAGTCCTTCGAGCAATTTTCCGAACATTACATGCTTGGGAACTC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * *
12980 GCATCATTTGGTCTAAAAACTTTGTCATTTTGTGAACAAGTTTTGGCCTTTGAATTAAAAACTTA
131 GCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* * *
13045 TTTGCTTGAGAATTGTTTCAC
195 TTTACGTGAGAATTGTTTCTC
* * *
13066 TCTTGGTTGTTGGATGAA-TTCCAAACTTGTCAAACTTTTACGAGTTCCTTTT-TAAA-TCTGGT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTT-CTTTTATAAATTC-GGT
* * * * * * * * * * * *
13128 CCCTTAAAGTGTTCAAGATGATCCATTCCTTCGAGTAATTCTCCGAACGTTCCCTACAAGGGAAA
64 TCCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAG
* * **
13193 TCGCATCATTTGGTC-AAAATTGTTTTTCATTATGAAAACAAGTTTTGATCTTTGAATTAAAAAC
129 TCGCATCATTTGGTCTAAAA--GTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
* *
13257 TTATTTACGAGAGAATTGTTTCTA
192 TTATTTACGTGAGAATTGTTTCTC
* * * * *** *
13281 TCTTGGTTCTTGGACGAAC-TTCTGAAATTGACAAACTTTTATGAGTTCTTTTATTGCTTCAGTT
1 TCTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * * * * * * ***
13345 CATTAAAGTATTAAAAACGATCCATTCCTTCCAGTAGTTTT-TCGAACAATCCA-GTCTCCAGAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATG-CTAGGGAA
* * * * * **
13408 ATCGTATCATTTGGTCTAAATAGTTTTTAATTTTGTAAAGACGTTCTT-ATCTTTGAATTAAAAA
128 GTCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTT-TTGGCCTTTGAATTAAAAA
*
13472 CCTATTTACGTGAGAATTGTTTCTC
191 CTTATTTACGTGAGAATTGTTTCTC
* * * * * ** *
13497 TCTTGGATCTTGGATGAAC-TTCTGAACTTGTCGAACTTTTTCGAGTTCTTTTATAGCTTCTGTT
1 TCTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * *
13561 CCTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAATTTT-TCGAACATTACATGCTTGGGAAG
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAG
** * * *
13625 TCATATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAGGTTTTAGCCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
13690 TATTTACGTGAGAATTGTTTCTC
193 TATTTACGTGAGAATTGTTTCTC
* * *
13713 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGATC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * *
13778 CTTAAAGTGTTCAAGACGATCCATTCCTTCAAGTAATTTTAC-GAACATTCCAAGCGAGGGAGAA
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTT-CTGAACATTACATGCTAGGGA-AG
* * * * **
13842 TCGTATCATTTGGTCTAAATAGTTTTCCATTTTGTAAAGATGTTTTGATCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
* *
13907 TTTTTACGTGAAAATTGTTTCTAC
193 TATTTACGTGAGAATTGTTTCT-C
* * * * * ** *
13931 -CTTGGTTCTTGGACGAACTTTTGAAATTGACAAACTATTACGAGTTCTTTTATAGCTTCAGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * *** * ** *
13995 AC-TAAAGTATTGAAGACGATCCATTCCTTCCAGTAGTTTT-TCGAACAACCCATTCTCTGGAAA
66 -CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAG
* * * * ***
14058 TTGTATCATTTGGTCTAAATAGTTCTTCATTTTGTAAAGAAGTTTTTATCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
14123 TATTTACGTGAGAATTGTTTCTC
193 TATTTACGTGAGAATTGTTTCTC
* * * * * * **
14146 TCATGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGACTACTTTTATAGCTTCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* ** * * *
14211 CATAAAGTACTCAAGACGATCCAATCCTTCGAGCAATTTCCCGAACATTACATGCTCGGGAAGTC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * *
14276 GTATCATTTGGTCTAAAAAGTTTTACATTTTGTGAACAAGTTTTGGCCTTTGAATTAAAAACTTA
131 GCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
14341 TTTACATGGGAATTGTTTCTC
195 TTTACGTGAGAATTGTTTCTC
* * * * * * *
14362 TCTTAGTTGTTGGACGATCTTCCGAACATGTCAAACTTTTACAAGTTCTTTTTTAAATTCGATTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * *
14427 CTTGAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTT-TCGAACATTCCATGCGAGGGAAAT
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAGT
** *
14491 CGCATCATTTGGTCTAAATAAATTTTCATTTTGTAAACAAGTTTTGGCCTTCGAATTAAAAACTT
130 CGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
14556 ATTTACGTGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * * *
14578 TCTTGGTTGTTCGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * * * *
14643 CTTAAAGTGTTAAAGAGGATCCATTCCTTTGAGTAATTTTCTTAACATTCCATGCGAGGGAAATC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * *
14708 ACATCATTTGGTTTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATCAAAAACTTA
131 GCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
14773 TTTACGTGAGAACTATTTCTC
195 TTTACGTGAGAATTGTTTCTC
* * * * *
14794 TCTTGGTTGTTCGACAAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTTTAAATCCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * ** ** * * * * *
14859 CTTAAAGTGTTGAAGATGATCCATTCCTTAAAGTTATTTTTTAAACATTCCATGCGAGGGAAATC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * * **
14924 GTATCACTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTA
131 GCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
* *
14989 TTTATGTGAGAATTGTTTTTC
195 TTTACGTGAGAATTGTTTCTC
* * * * * **
15010 TCTTGGTTCTTGGACGAA-TATCGAAACTTGTCGAACTTTTACAAGTTGTTTTATAGCTTCGGTT
1 TCTTGGTTGTTGGACGAACTTTCG-AACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * *
15074 CCTTAAACTAG-TCAAGACGATCCATTCCTTTGAGCAAGTTTTC-GAACATAACATGCTCGGGAG
65 CCTTAAAGT-GTTCAAGACGATCCAATCCTTCGAGCAA-TTTTCTGAACATTACATGCTAGGGAA
* * *
15137 GTCACATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAAC
128 GTCGCATCATTTGGTCT-AAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
*
15202 TTATTTACGTGAGAATTGTTTCTT
192 TTATTTACGTGAGAATTGTTTCTC
* * * *
15226 TCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTCTAAATTCGATTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * ** * * * * *
15291 CTTAAAGTGTTCAAGACGGTCCATTCCTTCAAATAATTTTATGAAC-GTCCATGCGAGGGAAATC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* * * * * *** * *
15355 ACATCATTCGGTCCAAATTGTTTTTCATTTTGTAAACATGTTTTAATCTTTTAATTAAAAACTTT
131 GCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
*
15420 TTTACGAGAGAATTGTTTC-C
195 TTTACGTGAGAATTGTTTCTC
* * ** *
15440 ATCTTGGTTCTTGGACGAACTTCTC-ATA-TTGACAAACTTTTACGAGTTCTTTTATAGCTTCAG
1 -TCTTGGTTGTTGGACGAACTT-TCGA-ACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGG
* * * * * * * * *
15503 TTCATTAAAGT-ATCAAAGACGATCCATTCCTTCAAGTAGTTTTTCT-AACAATCCATTCT----
63 TTCCTTAAAGTGTTC-AAGACGATCCAATCCTTCGAGCA-ATTTTCTGAACATTACATGCTAGGG
* * *
15562 --CTAG-A--ATTTGGTCTAAATAGTTTTTCATTTTGTAAACGAGTTTTGGCCTTTGAATTAAAA
126 AAGTCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAA
*
15622 ACATATTTACGTGAGAATTGTTTCTC
190 ACTTATTTACGTGAGAATTGTTTCTC
* *
15648 TCTTGGTTGTTGGAGGAAC-TTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
1 TCTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * * * *
15712 CCTTAGAGTGTTCAAGACGATCCATTTCTTCAAGTAATTTTAC-AAACATTCCATGCGAGGGAAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTT-CTGAACATTACATGCTAGGG-AA
* * ** *
15776 ATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAGTTAAAAAC
128 GTCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
15841 TTATTTACGTGAGAATTGTTTCTC
192 TTATTTACGTGAGAATTGTTTCTC
* ** ** * ** *
15865 TCATGGTACTTGGACGAACTACCGAACTTGTCAAACTTTTACGACTTCTTTTATAGCTTCGATTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * *
15930 CATAAAGTATTCAAGACGATCCAAACCTTCCAGCAATTTT-TCGAACATTACATGCTCGGGAAGT
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAGT
* *
15994 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
*
16059 ATTTACGTGGGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * * * * *
16081 TCTTGGTTGTTGGACGATCTTCCAAACTTGTCAAACTTTTACAAGCTCTTTTTTAAATTCGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * ** * * ** *
16146 CTTAAAGTGTTC-A-A-GATTCATTCC-ACGAGTAATTTTCCAAACATTCCATGCGAGCAAAATC
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
* *
16207 GTATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
131 GCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
16272 TTTACGTGAGAATTGTTTCTC
195 TTTACGTGAGAATTGTTTCTC
* * *
16293 TCTTGGTTGTTGGACGAAC-TTCTGAACTTGT-AAACTTTTAAGAGTTC-TTT-T---TCCAGTT
1 TCTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * ** * * * * * *
16351 CCTTAAAGTGTTCAATATGATTTATTCCTTCGAGTAATTTT-TCAAACATTCCATGCGAGAGTAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAG-GGAA
* * * * **
16415 -TCGCACCATTCGGCCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAAC
128 GTCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAAC
* *
16479 TTATTTACATGAGAATTGTTTCTA
192 TTATTTACGTGAGAATTGTTTCTC
* * ** * **
16503 TCTTGGTTCTTGGACGAAC-ATCGAAACTTGTTGAACTTTTACGAGTTGTTTTATAGCTTCGGTT
1 TCTTGGTTGTTGGACGAACTTTCG-AACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTT
* * * * * * *
16567 CCTTAAAGTATTCAAGATGATCCAATCCTTCGATCAATTTTTTGAACATAACATGCTCGGGAAAT
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGT
*
16632 CACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTT
16697 ATTTACGTGAGAATTGTTTCTC
194 ATTTACGTGAGAATTGTTTCTC
* * * * *
16719 TCTTGGTTGTTCGATGAACTTTCTAACTTGTTAAACTTTTACGAGTTCTTTTTTAAA-TCTGGTT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTC-GGTT
* * * * * * *
16783 CCTTAAAGTGTTGAAGATGATCCATTCCTTCGAGTAATTTT-TCGAACATTCCATGCGAGGGAAA
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAG
* **
16847 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGTTTTGATCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
*
16912 TATTTACATGAGGAA-TGTTTCTC
193 TATTTACGTGA-GAATTGTTTCTC
** * * * *
16935 TCTTGGTTCAT-GATGAACTTCCGAACTTGTCGAACTTTTACG-GCTTCTTTTATAACTTCGGTT
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAAATTCGGTT
* * * * * * *
16998 CCTTGAAGTATTCAAGATGATGCAATCTTTCGAGCAATTTT-TCGAACATTACATGCTCGAGAAG
65 CCTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAG
* *
17062 TCGCATCATTTGGTCTAAAATGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACT
129 TCGCATCATTTGGTCTAAAA-GTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
17127 TATTTACGTGAGAATTGTTTCTC
193 TATTTACGTGAGAATTGTTTCTC
* * * * *
17150 TCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAGTTCTTTTTTAAATTTGGTTC
1 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
* * * * * * * *
17215 CTTAAAGTGTTCAAGATGATCCATTACTTCGAGTAATTTT-TCGAACGTTCCATGCGAGGGAAAT
66 CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCT-GAACATTACATGCTAGGGAAGT
* * *
17279 CGCATCATTCGGTCTAAATTGTTTTTCATTTTCTAAAC
130 CGCATCATTTGGTCTAAA-AGTTTTTCATTTTGTAAAC
17317 TATCTTGGTT
Statistics
Matches: 6227, Mismatches: 1218, Indels: 634
0.77 0.15 0.08
Matches are distributed among these distances:
205 2 0.00
206 24 0.00
207 159 0.03
208 4 0.00
209 12 0.00
210 140 0.02
211 193 0.03
212 145 0.02
213 12 0.00
214 15 0.00
215 613 0.10
216 3526 0.57
217 932 0.15
218 44 0.01
219 18 0.00
220 7 0.00
221 12 0.00
222 6 0.00
223 3 0.00
224 18 0.00
225 19 0.00
226 8 0.00
227 10 0.00
228 16 0.00
229 21 0.00
230 22 0.00
231 24 0.00
232 18 0.00
233 11 0.00
234 14 0.00
235 14 0.00
236 9 0.00
237 17 0.00
238 10 0.00
239 16 0.00
240 15 0.00
241 20 0.00
242 6 0.00
243 13 0.00
244 14 0.00
245 9 0.00
246 9 0.00
247 7 0.00
248 2 0.00
249 7 0.00
250 7 0.00
251 2 0.00
252 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (215 bp):
TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTC
CTTAAAGTGTTCAAGACGATCCAATCCTTCGAGCAATTTTCTGAACATTACATGCTAGGGAAGTC
GCATCATTTGGTCTAAAAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTC
Found at i:10151 original size:433 final size:432
Alignment explanation
Indices: 9339--11245 Score: 2495
Period size: 433 Copynumber: 4.4 Consensus size: 432
9329 CATGTTTTGA
* * * * *
9339 TCTTGGTTCTTGGACGAACTTCCGGACGTT-TCAAACTTTTACGAGTTCATTTAATGATTCGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAAC-TTGTCAAACTTTTACGAGTTCTTTTTATAATTCGGTT
* * * * * * * *
9403 CCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTTCGAACATTACATGCTCA-GGAAT
65 CCTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGC-GAGGGAAA
* * * * * *
9467 TCACATCATTTGGTATAAAAAGTTTGTCATTTTGAAAACAAGTTTTGGCCTTTGAATTAAAAACT
129 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACT
* *
9532 TATTTACGTGACAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
194 TATTTACGTGAGAATTGTTTCTCACTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
* ** ** * *
9597 GAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGCCGATATAATCCTTTGAGCAATTTTCT
259 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAGCAATTTTCC
* * * * *
9662 GAACATTACATGCTTGGGAAGTTGCATGATTTGATCTAACAATTTTGTCATTTTGTAAACAAGTT
324 GAACATTACATGCTTGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTT
* **
9727 TTGGCCTTTGAATTGAAAACTTATTTATATGAGAATTGTTTCTC
389 TTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
*
9771 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTCTTAT-ATCCGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TTATAATTCGGTT
* * * * * *
9835 CCTTAAAATGTTCAAGATAATCTATTCCTTCGAGTAATTTTCCGAACATTCAATGCGAGGGAAAT
65 CCTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGGAAAT
* *
9900 CGTATCATTTGCTCTAAATAGTTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACT
130 CGCATCATTTGGTCTAAATAG-TTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACT
* * *
9965 TATTTAAGTGGGAATTGTTTCTCACTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTAC
194 TATTTACGTGAGAATTGTTTCTCACTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
** * ** * * *
10030 GAGTTCTTTT-TCAAAC-TCTATTCCTTAAAGTGTTCAAAATTATCCATTTCGTCGAGCAATTTT
259 GAGTTCTTTTAT--AACTTCGGTTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAGCAATTTT
** * * * *
10093 TTGAACATTACATGCTCT-GGAAGCCGCATCATTTGGTCTAAAAAGTTTGTCCTTTTGTAAATAG
322 CCGAACATTACATGCT-TGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAA
*
10157 GTTTTAGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
386 GTTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
10204 TCTTGGTTGTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTTTTAATTCAGATC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAATTCGGTTC
10269 CTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGGAAAAT
66 CTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGG-AAAT
* * *
10334 CGCATCATTTGGTCTGAATAGTTTTTCAGTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* *
10399 ATTTACGTGAGAATTGTGTCTCACTTGGTTCG-TGGAGGAACTTTCGAACTTGT-AGAACTTTTA
195 ATTTACGTGAGAATTGTTTCTCACTTGGTT-GTTGGACGAACTTTCGAACTTGTCA-AACTTTTA
* * * * *
10462 CGGGTTCTTTTATAACTTCGGTTCCTTAAAATATTGAAGACGATCCAATCCTTCGAGCAATTTTT
258 CGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAGCAATTTTC
* * * * *
10527 CGAACAATACATGCTTGGGTAGTCACATCATTTGGTCTGAAAAGTTTTTCATTTTGTAAACAAGT
323 CGAACATTACATGCTTGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGT
10592 TTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
388 TTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * *
10637 TCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAGGAGTTCTTTTTTTAATTCAGATC
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAATTCGGTTC
*
10702 CTTAAAGTGTTTAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGGAAAAT
66 CTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGG-AAAT
* ** * *
10767 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAGATTTTTTTATCTTTGAATTAAAAACAT
130 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAAC-T
* * * *
10832 T-TGTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTTTGAACTTGTCGAACTTTTAC
194 TATTTACGTGAGAATTGTTTCTCACTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
* * * ** *
10896 GACTTCTTTTATAGCTTCGGTTTCTTAAAGTACTT-AAGCCGATCGAATCCTTCGAGCAATTTTC
259 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTA-TTCAAAACGATCCAATCCTTCGAGCAATTTTC
* ** *
10960 CGAACATTACATGCTCGGGAAGTCGCAAAATTTGGTCTAAAAAGTTTTTCATTTTGTAAACAAGT
323 CGAACATTACATGCTTGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGT
* * *
11025 TTTGGCCTTTGAATTCACAAGTTATTTACGTGAGAATTGTTTCTC
388 TTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
** * * *
11070 TCTTGGTCATTGGACGAACTTTCGAACTTCTCAAACTTTTACGAGTTCTTTTT-TAAATTTGGTT
1 TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTAT-AATTCGGTT
* * * * ***
11134 CCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAATAAAAT
65 CCTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGGAAAT
* *
11199 CGCATCATTTGGTCTAAGTAGTTTTTCATTTTGTAAACATGTTTTGA
130 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGA
11246 TCTTGGTTCT
Statistics
Matches: 1300, Mismatches: 156, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
431 3 0.00
432 176 0.14
433 1090 0.84
434 31 0.02
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (432 bp):
TCTTGGTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTATAATTCGGTTC
CTTAAAGTGTTCAAGATGATCCATTCCTTCAAGTAATTTTACGAACATTCCATGCGAGGGAAATC
GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTCACTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAAACGATCCAATCCTTCGAGCAATTTTCCGA
ACATTACATGCTTGGGAAGTCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACAAGTTTT
GGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
Found at i:12127 original size:176 final size:176
Alignment explanation
Indices: 11815--12166 Score: 431
Period size: 176 Copynumber: 2.0 Consensus size: 176
11805 ATTATTTCTC
* * *
11815 TCTTGGTCGTTGGATGAACTTCCGAACTTGACAAACTTTTTTGAGTTATTTTTTAAATCTGGTTC
1 TCTTGGTCGTTGGACGAACTTCCGAACTTGACAAACTTTTATGAGTTATTTTATAAATCTGGTTC
* * * * *
11880 CTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCAAGAGAAATA
66 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCAAACATTACATGCAAGAGAAATA
* * * * *
11945 GCATCATTTGGTCTAAATAGTTTTTCATTTCGTAAACATGTTTTGA
131 GCATCATTTGGTATAAAAAGTTTGTCATTTCGAAAACAAGTTTTGA
* ** * **
11991 TCTTGGTTC-TTGGACGAACTTCCGATCTTTTCAAACTTTTATGAGTTCTTTTATAGCT-TCGGT
1 TCTTGG-TCGTTGGACGAACTTCCGAACTTGACAAACTTTTATGAGTTATTTTATAAATCT-GGT
* *
12054 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCTCAG-GAA
64 TCCTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCAAACATTACATGC-AAGAGAA
* * * *
12118 GTCGCATCATTTGTTATAAAAAGTTTGTCATTTTGAAAACAAGTTTTGA
128 ATAGCATCATTTGGTATAAAAAGTTTGTCATTTCGAAAACAAGTTTTGA
12167 CCTTTGAATT
Statistics
Matches: 148, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
175 1 0.01
176 143 0.97
177 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (176 bp):
TCTTGGTCGTTGGACGAACTTCCGAACTTGACAAACTTTTATGAGTTATTTTATAAATCTGGTTC
CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCAAACATTACATGCAAGAGAAATA
GCATCATTTGGTATAAAAAGTTTGTCATTTCGAAAACAAGTTTTGA
Found at i:14928 original size:648 final size:647
Alignment explanation
Indices: 11991--17316 Score: 5894
Period size: 647 Copynumber: 8.3 Consensus size: 647
11981 CATGTTTTGA
* * *
11991 TCTTGGTTCTTGGACGAACTTCCGATCTTTTCAAACTTTTATGAGTTCTTTTATAGCTTCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * * * * *
12056 CTTAAAGTATTCAAGACGATCCAATCCTTCAAGCAATTTTCCGAACATTACATGCTCA-GGAAGT
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT-TGAACATTCCATGC-GAGGGAAAT
* * * * *
12120 CGCATCATTTGTTATAAAAAGTTTGTCATTTTGAAAACAAGTTTTGACCTTTGAATTAAAAACTT
129 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* *
12185 ATTTACATGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC-TTCGAAACTTGTCAAACTTTTAC
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG-AACTTGTCAAACTTTTAC
* * * *
12249 GATTTCTTTT-TCCAA-T---TT-CTTAAAGTGTTCAAGACGATCCATTCCTTCGAATAATTTTC
258 GAGTTCTTTTAT-AAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTC
* ** * * *
12308 CGAACATTCCGTGCGAGATAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTTTAAACATGT
322 CGAACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGT
** * * * *
12373 TTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGATCTTGGTTC-AAC
387 TTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGG-ACGAAC
* * * * ** * *
12437 TTCCGAACTTGACGAACTTTTATGAGTTATTTTATAGCTTCGGTTCCTTAAAGTATTCAACACGA
451 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGA
* * * * * * * * *
12502 TCCAAT-CTCTCAAGCAATTTTTCAAACATTACAAGCTAGGGAAGTCGTATCATTTGGTCTAAA-
516 TCCATTCCT-TCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAAT
* * * * * * * * *
12565 AAGTTTGGCGTTTTGTAAACAAGTTTTGGCCTTTGGATTAAAACCTTAGTTATGGGAGAATTATT
580 AAGTTT-TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
12630 TCTC
644 TCTC
* * * * ** *
12634 TCTTGGTTGTTGGACGAACTTACGAACATGTCAAACTTTTACAAGTTCTTTCT-TAAATCCGGTT
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTT-TATAGCTTCGGTT
* * * **
12698 TCTTAAAGCATTCTAGACGATCCATTCCTTCGAGTAATTTTCCAAACATTCCATGCGAGGGAAAT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT-TGAACATTCCATGCGAGGGAAAT
* * * *
12763 CACATCATTTTGTCTAAATAGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTT
129 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* * * * * * * * *
12828 ATTTGCGTGAGAATTGTTTCTCCCTTGGTTCTTGAACGACCATCCGAACTTGTCGAACTGTTACT
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACG
* * * *
12893 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCAGTCCTTCGAGCAATTTTCCG
259 AGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCCG
* ** * * * * * *
12958 AACATTACATGCTTGGGAACTCGCATCATTTGGTCTAAAAACTTTGTCATTTTGTGAACAAGTTT
324 AACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * *
13023 TGGCCTTTGAATTAAAAACTTATTTGCTTGAGAATTGTTTCACTCTTGGTTGTTGGATGAA-TTC
389 TGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTC
* * *
13087 CAAACTTGTCAAACTTTTACGAGTTCCTTTT-TAAA-TCTGGTCCCTTAAAGTGTTCAAGATGAT
454 CGAACTTGTCAAACTTTTACGAGTT-CTTTTATAAATTC-GGTTCCTTAAAGTGTTCAAGACGAT
* * * * * * * *
13150 CCATTCCTTCGAGTAATTCTCCGAACGTTCCCTACAAGGGAAATCGCATCATTTGGTCAAAAT-T
517 CCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAA
* * * *
13214 GTTTTTCATTATGAAAACAAGTTTTGATCTTTGAATTAAAAACTTATTTACGAGAGAATTGTTTC
582 G-TTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
*
13279 TA
646 TC
* * * * * *
13281 TCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTATGAGTTCTTTTATTGCTTCAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * * * * * *
13346 ATTAAAGTATTAAAAACGATCCATTCCTTCCAGTAGTTTTTCGAACAATCCAGTCTCCA--GAAA
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT-GAACATTCCA-T-GCGAGGGAAA
* * * * *
13409 TCGTATCATTTGGTCTAAATAGTTTTTAATTTTGTAAAGACGTTCTT-ATCTTTGAATTAAAAAC
128 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTT-TTGACCTTTGAATTAAAAAC
* * * *
13473 CTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGATGAAC-TTCTGAACTTGTCGAACTTTT
192 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTT
* ** * * * *
13537 TCGAGTTCTTTTATAGCTTCTGTTCCTTAAAGTATTCAAGATGATCCAATCCTTCGAGCAATTTT
256 ACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT
* * ** * * * * *
13602 TCGAACATTACATGCTTGGGAAGTCATATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAGG
321 CCGAACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAG
*
13667 TTTTAGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
386 TTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
* *
13732 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATTCGGATCCTTAAAGTGTTCAAGACGA
451 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGA
* * * *
13797 TCCATTCCTTCAAGTAATTTTACGAACATTCCAAGCGAGGGAGAATCGTATCATTTGGTCTAAAT
516 TCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGA-AATCGCATCATTTGGTCTAAAT
* * * * *
13862 -AGTTTTCCATTTTGTAAAGATGTTTTGATCTTTGAATTAAAAACTTTTTTACGTGAAAATTGTT
580 AAGTTTT-CATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
13926 TCTAC
644 TCT-C
** * * * *
13931 -CTTGGTTCTTGGACGAACTTTTGAAATTGACAAACTATTACGAGTTCTTTTATAGCTTCAGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * ** * ***
13995 AC-TAAAGTATTGAAGACGATCCATTCCTTCCAGTAGTTTTTCGAACAACCCATTCTCTGGAAAT
66 -CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT-GAACATTCCATGCGAGGGAAAT
* * * * * *
14059 TGTATCATTTGGTCTAAATAGTTCTTCATTTTGTAAAGAAGTTTTTATCTTTGAATTAAAAACTT
129 CGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTT
* * *
14124 ATTTACGTGAGAATTGTTTCTCTCATGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACG
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACG
* * ** * * * * *
14189 ACTACTTTTATAGCTTCGGTTCCATAAAGTACTCAAGACGATCCAATCCTTCGAGCAATTTCCCG
259 AGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCCG
* ** * * * *
14254 AACATTACATGCTCGGGAAGTCGTATCATTTGGTCTAAAAAGTTTTACATTTTGTGAACAAGTTT
324 AACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTT
* * * *
14319 TGGCCTTTGAATTAAAAACTTATTTACATGGGAATTGTTTCTCTCTTAGTTGTTGGACGATCTTC
389 TGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTC
* * * * *
14384 CGAACATGTCAAACTTTTACAAGTTCTTTTTTAAATTCGATTCCTTGAAGTGTTCAAGACGATCC
454 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCC
*
14449 ATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAAAT
519 ATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAAGT
* *
14514 TTTCATTTTGTAAACAAGTTTTGGCCTTCGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
584 TTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * * * ** *
14578 TCTTGGTTGTTCGACTAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTTTAAATCCGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * * *
14643 CTTAAAGTGTTAAAGAGGATCCATTCCTTTGAGTAATTTTCTTAACATTCCATGCGAGGGAAATC
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT-TGAACATTCCATGCGAGGGAAATC
* * * *
14708 ACATCATTTGGTTTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATCAAAAACTTA
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* * * * * *
14773 TTTACGTGAGAACTATTTCTCTCTTGGTTGTTCGACAAACTTTCGAACTTGTCAAACTTTTATGA
195 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * ** * ***
14838 GTTCTTTTTTAAATCCGGTTCCTTAAAGTGTTGAAGATGATCCATTCCTTAAAGTTATTTTTTAA
260 GTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGA
* *
14903 ACATTCCATGCGAGGGAAATCGTATCACTTGGTCTAAATAGTTTTTCATTTTGTAAACATGTTTT
325 ACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
** * * *
14968 GATCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAA-TAT-
390 GGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACT-TC
* * * ** *
15031 CGAAACTTGTCGAACTTTTACAAGTTGTTTTATAGCTTCGGTTCCTTAAACTAG-TCAAGACGAT
454 CG-AACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGT-GTTCAAGACGAT
* * * ** ** ** *
15095 CCATTCCTTTGAGCAAGTTTTCGAACATAACATGCTCGGGAGGTCACATCATTTGGTCTAAA-AA
517 CCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAA
* *
15159 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACTTATTTACGTGAGAATTGTTTC
582 GTTT-TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
*
15224 TT
646 TC
* * * ** *
15226 TCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTCTAAATTCGATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * * *
15291 CTTAAAGTGTTCAAGACGGTCCATTCCTTCAAATAATTTTATGAAC-GTCCATGCGAGGGAAATC
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTT-TGAACATTCCATGCGAGGGAAATC
* * * * * * * * *
15355 ACATCATTCGGTCCAAATTGTTTTTCATTTTGTAAACATGTTTTAATCTTTTAATTAAAAACTTT
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* *
15420 TTTACGAGAGAATTGTTTC-CATCTTGGTTCTTGGACGAACTTCTC-ATA-TTGACAAACTTTTA
195 TTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTT-TCGA-ACTTGTCAAACTTTTA
** * * * *
15482 CGAGTTCTTTTATAGCTTCAGTTCATTAAAGTA-TCAAAGACGATCCATTCCTTCAAGTAGTTTT
257 CGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGTAATTTT
* * * * ** *
15546 TCTAACAATCCATTC--------TC-TAGAATTTGGTCTAAATAGTTTTTCATTTTGTAAACGAG
321 CCGAACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAG
* *
15602 TTTTGGCCTTTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGAGGAAC
386 TTTTGGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAAC
** *
15667 TTCTAAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAGAGTGTTCAAGACGA
451 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGA
* * * *
15732 TCCATTTCTTCAAGTAATTTTACAAACATTCCATGCGAGGGAAAATCGCATCATTTGGTCTAAAT
516 TCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGG-AAATCGCATCATTTGGTCTAAAT
* * *
15797 -AGTTTTTCATTTTGTAAACATGTTTTGATCTTTGAGTTAAAAACTTATTTACGTGAGAATTGTT
580 AAG-TTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
15861 TCTC
644 TCTC
* * * * *
15865 TCATGGTACTTGGACGAACTACCGAACTTGTCAAACTTTTACGACTTCTTTTATAGCTTCGATTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* ** * * * ** *
15930 CATAAAGTATTCAAGACGATCCAAACCTTCCAGCAATTTTTCGAACATTACATGCTCGGGAAGTC
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT-GAACATTCCATGCGAGGGAAATC
* * *
15995 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTA
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTA
* * * * * *
16060 TTTACGTGGGAATTGTTTCTCTCTTGGTTGTTGGACGATCTTCCAAACTTGTCAAACTTTTACAA
195 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGA
* * * * * *
16125 GCTCTTTTTTAAATTCGGTTCCTTAAAGTGTTC-A-A-GATTCATTCC-ACGAGTAATTTTCCAA
260 GTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGA
** *
16186 ACATTCCATGCGAGCAAAATCGTATCATTTGGTCCAAATAGTTTTTCATTTTGTAAACAAGTTTT
325 ACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT
*
16251 GGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCT
390 GGCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCC
* * * * * **
16316 GAACTTGT-AAACTTTTAAGAGTTC-TTT-T---TCCAGTTCCTTAAAGTGTTCAATATGATTTA
455 GAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCA
* * * * * *
16375 TTCCTTCGAGTAATTTTTCAAACATTCCATGCGAGAGTAATCGCACCATTCGGCCTAAAT-AGTT
520 TTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAAG-T
* * * *
16439 TTTCATTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTA
584 TTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* ** *
16503 TCTTGGTTCTTGGACGAACAT-CGAAACTTGTTGAACTTTTACGAGTTGTTTTATAGCTTCGGTT
1 TCTTGGTTCTTGGACGAACTTCCG-AACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTT
* * ** **
16567 CCTTAAAGTATTCAAGATGATCCAATCCTTCGA-TCAATTTTTTGAACATAACATGCTCGGGAAA
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGT-AA-TTTTTGAACATTCCATGCGAGGGAAA
* *
16631 TCACATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
128 TCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACT
* * * * *
16696 TATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTCGATGAACTTTCTAACTTGTTAAACTTTTAC
193 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTAC
* * * * *
16761 GAGTTCTTTTTTAAA-TCTGGTTCCTTAAAGTGTTGAAGATGATCCATTCCTTCGAGTAATTTTT
258 GAGTTCTTTTATAAATTC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTC
* *
16825 CGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAAAAGT
322 CGAACATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGT
** * ** *
16890 TTTGATCTTTGAATTAAAAACTTATTTACATGAGGAA-TGTTTCTCTCTTGGTTCAT-GATGAAC
387 TTTGGCCTTTGAATTAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTGTTGGACGAAC
* * * * *
16953 TTCCGAACTTGTCGAACTTTTACG-GCTTCTTTTATAACTTCGGTTCCTTGAAGTATTCAAGATG
451 TTCCGAACTTGTCAAACTTTTACGAG-TTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACG
* * * * * ** * *
17017 ATGCAATCTTTCGAGCAATTTTTCGAACATTACATGCTCGAGAAGTCGCATCATTTGGTCTAAA-
515 ATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAAT
* * *
17081 ATGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACTTATTTACGTGAGAATTGTT
580 AAGTTT-TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTT
17146 TCTC
644 TCTC
* * * * ** *
17150 TCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAGTTCTTTTTTAAATTTGGTTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
* * * *
17215 CTTAAAGTGTTCAAGATGATCCATTACTTCGAGTAATTTTTCGAACGTTCCATGCGAGGGAAATC
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTT-GAACATTCCATGCGAGGGAAATC
* * *
17280 GCATCATTCGGTCTAAATTGTTTTTCATTTTCTAAAC
130 GCATCATTTGGTCTAAATAGTTTTTCATTTTGTAAAC
17317 TATCTTGGTT
Statistics
Matches: 3972, Mismatches: 625, Indels: 168
0.83 0.13 0.04
Matches are distributed among these distances:
636 20 0.01
637 14 0.00
638 510 0.13
639 238 0.06
640 145 0.04
641 30 0.01
642 131 0.03
643 230 0.06
644 24 0.01
645 109 0.03
646 15 0.00
647 976 0.25
648 946 0.24
649 582 0.15
650 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (647 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCGGTTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTGAACATTCCATGCGAGGGAAATCG
CATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTCCGAA
CATTCCATGCGAGGGAAATCGTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTG
GCCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTGTTCAAGACGATCCAT
TCCTTCGAGTAATTTTTCGAACATTCCATGCGAGGGAAATCGCATCATTTGGTCTAAATAAGTTT
TCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
Found at i:17464 original size:169 final size:168
Alignment explanation
Indices: 17150--17478 Score: 374
Period size: 169 Copynumber: 2.0 Consensus size: 168
17140 ATTGTTTCTC
* * *
17150 TCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAGTTCTTTTTTAAATTTGGTTC
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGACAAACTTTTACCAGTTCTTTTATAAATTTGGTTC
* ** * * * * ** * *
17215 CTTAAAGTGTTCAAGATGATCCATTACTTCGAGTAATTTTTCGAACGTTCCATGCGAGGGAAATC
66 ATTAAAGTACTAAAGACGATCCATTACTTCCAGCAATTTTTCGAACAATCCATGCGACGAAAATC
*
17280 GCATCATTCGGTCTAAATTGTTTTTCATTTTCTAAACTA
131 GCATCATTCGGTCTAAATAGTTTTT-ATTTTCTAAACTA
* * **
17319 TCTTGGTTCTTGGACGAACTTCTGAAA-TTGACAAACTTTTACGAGTTCTTTTATAGCTTCT-GT
1 TCTTGGTTCTTGGACGAACTTC-CAAACTTGACAAACTTTTACCAGTTCTTTTATAAATT-TGGT
* * * **
17382 TCATTAAAGTACTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTCCGAAAA
64 TCATTAAAGTACTAAAGACGATCCATTACTTCCAGCAATTTTTCGAACAATCCATGCGACGAAAA
* * *
17447 TCGTATCGTTTGGTCTAAATAGTTTTTATTTT
129 TCGCATCATTCGGTCTAAATAGTTTTTATTTT
17479 GTAACGTAGT
Statistics
Matches: 131, Mismatches: 27, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
168 5 0.04
169 122 0.93
170 4 0.03
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (168 bp):
TCTTGGTTCTTGGACGAACTTCCAAACTTGACAAACTTTTACCAGTTCTTTTATAAATTTGGTTC
ATTAAAGTACTAAAGACGATCCATTACTTCCAGCAATTTTTCGAACAATCCATGCGACGAAAATC
GCATCATTCGGTCTAAATAGTTTTTATTTTCTAAACTA
Found at i:17667 original size:383 final size:384
Alignment explanation
Indices: 16935--17699 Score: 896
Period size: 383 Copynumber: 2.0 Consensus size: 384
16925 AATGTTTCTC
* * * * *
16935 TCTTGGTTCATGATGAACTTCCGAACTTGTCGAACTTTTACGGCTTCTTTTATAACTTCGGTTCC
1 TCTTGGTTCATGACGAACTTCCGAAATTGACAAACTTTTACGGCTTCTTTTATAACTTCGGTTCA
* * * * * * * * *
17000 TTGAAGTATTCAAGATGATGCAATCTTTCGAGCAATTTTTCGAACATTACATGCTCGAGAAGTCG
66 TTAAAGTACTAAAGACGATCCAATCCTTCCAGCAATTTTTCGAACAATACATGCTCGAGAAATCG
* *
17065 CATCATTTGGTCTAAAATGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAATTTAAAACTTAT
131 CATCATTTGGTCTAAAATGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTAT
* * * *
17130 TTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAG
196 TTACGTGAGAATCGTTTCTCTCTAGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAG
* * * *
17195 TTCTTTTTTAAATTTGGTTCCTTAAAGTGTTCAAGATGATCCATTACTTCGAGTAATTTTTCGAA
261 TTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATCCAATACTTCGAGCAATTTTTCGAA
* * ** *
17260 CGTTCCATGCGAGGGAAATCGCATCATTCGGTCTAAATTGTTTTTCATTTTCTAAACTA
326 CATTACATGCGAGGGAAATCGCATCATTCGGTCTAAACAGTTTGTCATTTTCTAAACTA
* * * *
17319 TCTTGGTTCTTGGACGAACTTCTGAAATTGACAAACTTTTACGAG-TTCTTTTATAGCTTCTGTT
1 TCTTGGTTCAT-GACGAACTTCCGAAATTGACAAACTTTTACG-GCTTCTTTTATAACTTCGGTT
* * * *
17383 CATTAAAGTACTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTCCGA-AAA
64 CATTAAAGTACTAAAGACGATCCAATCCTTCCAGCAATTTTTCGAACAATACATGCT-CGAGAAA
* * * * *
17447 TCGTATCGTTTGGTCT-AAATAGTTT-TTATTTTGT-AACGTAGTTTT-ATCTTTGAATTAAAAA
128 TCGCATCATTTGGTCTAAAAT-GTTTGTCATTTTGTAAAC-AAGTTTTGACCTTTGAATTAAAAA
* * ** **
17508 CTTATTTATGTGAGAATCGTTTCTCTCTAGGATCTTGGATGAACTTCTGAACTTGTTGAACTTTT
191 CTTATTTACGTGAGAATCGTTTCTCTCTAGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTT
* ** * *
17573 ACGAGTTCTTTTATAGCTTCT-GTTCCTTAAAGTATTCGAGATGATCCAATCCTTCGAGCAATTT
256 ACCAGTTCTTTTATAAATT-TGGTTCCTTAAAGTATTCAAGATGATCCAATACTTCGAGCAATTT
* ** * * *
17637 TTCGAACATTATATGCTCGGGAAGTCGCATCATTTGGTCTAAACAGTTTGTCATTTTGTAAAC
320 TTCGAACATTACATGCGAGGGAAATCGCATCATTCGGTCTAAACAGTTTGTCATTTTCTAAAC
17700 AGGTTTTGGC
Statistics
Matches: 316, Mismatches: 59, Indels: 13
0.81 0.15 0.03
Matches are distributed among these distances:
383 176 0.56
384 29 0.09
385 107 0.34
386 4 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (384 bp):
TCTTGGTTCATGACGAACTTCCGAAATTGACAAACTTTTACGGCTTCTTTTATAACTTCGGTTCA
TTAAAGTACTAAAGACGATCCAATCCTTCCAGCAATTTTTCGAACAATACATGCTCGAGAAATCG
CATCATTTGGTCTAAAATGTTTGTCATTTTGTAAACAAGTTTTGACCTTTGAATTAAAAACTTAT
TTACGTGAGAATCGTTTCTCTCTAGGATCTTGGACGAACTTCCAAACTTGTCAAACTTTTACCAG
TTCTTTTATAAATTTGGTTCCTTAAAGTATTCAAGATGATCCAATACTTCGAGCAATTTTTCGAA
CATTACATGCGAGGGAAATCGCATCATTCGGTCTAAACAGTTTGTCATTTTCTAAACTA
Found at i:17788 original size:216 final size:216
Alignment explanation
Indices: 17319--19252 Score: 1994
Period size: 216 Copynumber: 8.9 Consensus size: 216
17309 TTCTAAACTA
* *
17319 TCTTGGTTCTTGGACGAAC-TTCTGAAATTGACAAACTTTTACGAGTTCTTTTATAGCTTCTGTT
1 TCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTGTT
* * * * * * * * *
17383 CATTAAAGTACTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTCCGAAAAT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * *
17448 CGTATCGTTTGGTCTAAATAGTTT-TTATTTTGT-AACGTAGTTTT-ATCTTTGAATTAAAAACT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC-AAGTTTTGATCTTTGAATTAAAAACT
* *
17510 TATTTATGTGAGAATCGTTTCTC
194 TATTTACGTGAGAATTGTTTCTC
* * * **
17533 TCTAGGATCTTGGATGAAC-TTCTGAACTTGTTGAACTTTTACGAGTTCTTTTATAGCTTCTGTT
1 TCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTGTT
* * * ** *
17597 CCTTAAAGTATTCGAGATGATCCAATCCTTCGAGCAATTTTTCGAACATTATATGCTCGGGAAGT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * **
17662 CGCATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAGGTTTTGGCCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTT
*
17727 ATTTACATGAGAATTGTTTCTC
195 ATTTACGTGAGAATTGTTTCTC
* * * * **
17749 TCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTTACAAGCTCTTTTATA-AATCTGGTT
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCT-GTT
* * * * * * * ** *
17813 CCTTAAAGTGTTCAAGACTATCCATTCCTTC-ATGTAATTTTACGTATATTCCAAGCAAGGAAAT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGA-GCAATTTTTCGAACATTCCATGCTCGGGAA-
* * *
17877 ATCGTATCATTTGGTCTAAATAGTTT-TCTTTTTGTAAACATGTTTTGATCTTTGAATTAAAAAC
128 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAAC
* * *
17941 TTTTTTACGGGAGAATTGTTTCTA
193 TTATTTACGTGAGAATTGTTTCTC
* * * * * *
17965 TAC-TGGTTCTTGGACAAACTTTTGAAATTGACAAACTTTTACGAGTTCTTTTATTGCTTCAGTT
1 T-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTGTT
* * * * * * * * * * **
18029 CATTAAAGTATTAAAGACAATTCATTCCTTCCAACAGTTTTTTGAACAATCCATTCTTTGGAAAT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
** * * * *
18094 CGTGTCATTTTGTCTAAATAGTTTTTCATTTTGTAAAGAAGTTTTTATCTTTGAATTAAAAACTT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTT
18159 ATTTACGTGAGAATTGTTTCTC
195 ATTTACGTGAGAATTGTTTCTC
* * * *
18181 TCTTGGTTCTTGGATGAACTTCCGAACTTGTCGAACTTTTATGAGTTCTTTTATAGCTT-TGCTT
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTG-TT
* * * * * *
18245 CCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTCCGAACATTACAAGCTCGGGAAGT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* * * ** *
18310 CGCATCATTTGGTCTAAATAGTTTGTCATTTAGTAAGCAAGCTTTGGCCTTTGAATTAAAAACAT
130 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTT
*
18375 ATTTAGGTGAGAATTGTTTCTC
195 ATTTACGTGAGAATTGTTTCTC
* * * * * * * *
18397 TCTTGTTTGTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTT-TCGAATCCGGTT
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAG-CTTCTGTT
* * * * * *
18461 CCATAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTTCGAACATTACAAGCTCGGGAAGT
65 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* **
18526 CGCATCATTTGGTCTCAAA-AGTTTGTCATTTAGTAAACAAGTTTTGGCCTTTGAATTAAAAACT
130 CGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACT
* *
18590 TATTTACGTGNNNNNNNNNNNNNGAATTATTTCTC
194 TATTTACGTG------------AGAATTGTTTCTC
* * * * * * ** * **
18625 TCTTGATTGTTGGACGAACTTTCGAACATGTCAAAATTTTACTAGTTCTTTTTTAAATCCAATTC
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTGTTC
* * * * * ** *
18690 CTTAAAGTGTTCAGGACGGTCCATTCCTTCGAGTAATTTTTCGAACATTCCATTCGAGGGAAATA
66 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
18755 GTATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTCAATTTAAAACTTA
131 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTA
*
18820 TTTACGTGAGAATTGTGTCTC
196 TTTACGTGAGAATTGTTTCTC
* *
18841 TCTTGGTTCTTGGACAAAATTTCGAACTTGT-AGAACTTTTACGAGTTCTTTTATAGCTTC-GAT
1 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCA-AACTTTTACGAGTTCTTTTATAGCTTCTG-T
* * * *
18904 TCCTTAAAGTATGCAAGGCGATCCAATCCTTCGAGCAATTTTTCGAACATTACATGCTCGGGAAA
64 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA
* ** *
18969 TCACATCATTTGGTCTAAA-AGGTTTGTCATTTTGTAAACAAGTTTTGGCCATTGAATTAAAAAC
129 TCGCATCATTTGGTCTAAATA-GTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAAC
* *
19033 ATATTTACGTGAGAATTGTTTTTC
193 TTATTTACGTGAGAATTGTTTCTC
* * * **
19057 TCTTGGTTGTTGGACGAA-TTTCCGAACTTGTCAAACTTTTACTAGTTCTTTT-TTGAATCTGGT
1 TCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCT-GT
* * * * **
19120 TCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGTAATTTTGCGAACATTCCATTCGAGGGAAA
64 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA
* * * * * *
19185 TCGCATAATTTGGTCTAAATAGTTTTTCTTTTTGTAAACATGTTTTGATATTTTAATTAAAAACT
129 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACT
19250 TAT
194 TAT
Statistics
Matches: 1421, Mismatches: 261, Indels: 74
0.81 0.15 0.04
Matches are distributed among these distances:
214 128 0.09
215 54 0.04
216 1015 0.71
217 37 0.03
227 3 0.00
228 183 0.13
229 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (216 bp):
TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAGCTTCTGTTC
CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGATCTTTGAATTAAAAACTTA
TTTACGTGAGAATTGTTTCTC
Found at i:18943 original size:660 final size:642
Alignment explanation
Indices: 17325--19252 Score: 2425
Period size: 660 Copynumber: 3.0 Consensus size: 642
17315 ACTATCTTGG
* * * * **
17325 TTCTTGGACGAAC-TTCTGAAATTGACAAACTTTTACGAGTTCTTTTA-TAGCTTCTGTTCATTA
1 TTCTTGGACAAACTTTC-GAAATTGACAAAATTTTACGAGTTCTTTTATTA-ATCCAATTCATTA
* * *
17388 AAGTACTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTCCGAAAATCGTAT
64 AAGTATTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTACGGAAATCGTAT
* *
17453 CGTTTGGTCTAAATAGTTTTT-ATTTTGT-AACGTAGTTTTATCTTTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTTTCATTTTGTAAAC-AAGTTTTATCTTTGAATTAAAAACTTATTTA
* * * * ** * *
17516 TGTGAGAATCGTTTCTCTCTAGGATCTTGGATGAACTTCTGAACTTGTTGAACTTTTACGAGTTC
193 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAATTTC-GAACTTGTAGAACTTTTACGAGTTC
* * *
17581 TTTTATAGCTTCTGTTCCTTAAAGTATTCGAGATGATCCAATCCTTCGAGCAATTTTTCGAACAT
257 TTTTATAGCTTC-GTTCCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACAT
* *
17646 TATATGCTCGGGAAGTCGCATCATTTGGTCTAAACAGTTTGTCATTTTGTAAACAGGTTTTGGCC
321 TACATGCTCGGGAAGTCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAAGTTTTGGCC
* * * *
17711 TTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTGTTGGATGAACTTTCGAAC
385 TTTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAAC
* * * *
17776 TTGTCAAACTTTTACAAGCTCTTTTATAAATCTGGTTCCTTAAAGTGTTCAAGACTATCCATTCC
450 TTGTCAAACTTTTACTAGTTCTTTT-TGAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCC
* * * *
17841 TTC-ATGTAATTTTACGTATATTCCAAGCAAGGAAATATCGTATCATTTGGTCTAAATAGTTTTC
514 TTCGA-GTAATTTTACGAACATTCCAAGCAAGGGAA-ATCGCATCATTTGGTCTAAATAGTTTTC
* *
17905 TTTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTTTTTACGGGAGAATTGTTTCTATACTG
577 TTTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTATTTACGGGAGAATTATTTCTATACTG
*
17970 G
642 A
* * ** * *
17971 TTCTTGGACAAACTTTTGAAATTGACAAACTTTTACGAGTTCTTTTATTGCTTCAGTTCATTAAA
1 TTCTTGGACAAACTTTCGAAATTGACAAAATTTTACGAGTTCTTTTATTAATCCAATTCATTAAA
* * * * ** *
18036 GTATTAAAGACAATTCATTCCTTCCAACAGTTTTTTGAACAATCCATTCTTTGGAAATCGTGTCA
66 GTATTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTACGGAAATCGTATCA
* *
18101 TTTTGTCTAAATAGTTTTTCATTTTGTAAAGAAGTTTTTATCTTTGAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAG-TTTTATCTTTGAATTAAAAACTTATTTACG
* * * * *
18166 TGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCGAACTTTTATGAGTTCTT
195 TGAGAATTGTTTCTCTCTTGGTTCTTGGA-AAAATTTCGAACTTGTAGAACTTTTACGAGTTCTT
* *
18231 TTATAGCTTTGCTTCCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTCCGAACATTA
259 TTATAGCTTCG-TTCCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTA
* * * *
18296 CAAGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTAGTAAGCAAGCTTTGGCCTT
323 CATGCTCGGGAAGTCGCATCATTTGGTCTAAA-AGTTTGTCATTTTGTAAACAAGTTTTGGCCTT
* *
18361 TGAATTAAAAACATATTTAGGTGAGAATTGTTTCTCTCTTGTTTGTTGGACGAACTTCCGAACTT
387 TGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTT
* *
18426 GTCAAACTTTTACTAGTTCTTTTTCGAATCCGGTTCCATAAAGTGTTCAAGACGATCCATTCCTT
452 GTCAAACTTTTACTAGTTCTTTTT-GAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTT
* * ** * *
18491 CGAGTAATTTTTCGAACATTACAAGCTCGGGAAGTCGCATCATTTGGTCTCAAA-AGTTTGTCAT
516 CGAGTAATTTTACGAACATTCCAAGCAAGGGAAATCGCATCATTTGGTCT-AAATAGTTT-TCTT
* * ** **
18555 TTAGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTGNNNNNNNNNNNNNGAATTAT
579 TTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTATTTACG-G-----------GAGAATTAT
*
18620 TTCTCT-CTTGA
632 TTCTATAC-TGA
* * * * *
18631 TTGTTGGACGAACTTTCGAACA-TGTCAAAATTTTACTAGTTCTTTT-TTAAATCCAATTCCTTA
1 TTCTTGGACAAACTTTCGAA-ATTGACAAAATTTTACGAGTTCTTTTATT-AATCCAATTCATTA
* * * * * * * * * * *
18694 AAGTGTTCAGGACGGTCCATTCCTTCGAGTAATTTTTCGAACATTCCATTCGAGGGAAATAGTAT
64 AAGTATTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTACGGAAATCGTAT
* *
18759 CATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGATCTTTCAATTTAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTT-ATCTTTGAATTAAAAACTTATTTA
*
18824 CGTGAGAATTGTGTCTCTCTTGGTTCTTGGACAAAATTTCGAACTTGTAGAACTTTTACGAGTTC
193 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AAAATTTCGAACTTGTAGAACTTTTACGAGTTC
* *
18889 TTTTATAGCTTCGATTCCTTAAAGTATGCAAGGCGATCCAATCCTTCGAGCAATTTTTCGAACAT
257 TTTTATAGCTTCG-TTCCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACAT
* *
18954 TACATGCTCGGGAAATCACATCATTTGGTCTAAAAGGTTTGTCATTTTGTAAACAAGTTTTGGCC
321 TACATGCTCGGGAAGTCGCATCATTTGGTCTAAAA-GTTTGTCATTTTGTAAACAAGTTTTGGCC
* * *
19019 ATTGAATTAAAAACATATTTACGTGAGAATTGTTTTTCTCTTGGTTGTTGGACGAATTTCCGAAC
385 TTTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAAC
19084 TTGTCAAACTTTTACTAGTTCTTTTTTGAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCC
450 TTGTCAAACTTTTACTAGTTC-TTTTTGAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCC
* ** * *
19149 TTCGAGTAATTTTGCGAACATTCCATTCGAGGGAAATCGCATAATTTGGTCTAAATAGTTTTTCT
514 TTCGAGTAATTTTACGAACATTCCAAGCAAGGGAAATCGCATCATTTGGTCTAAATAG-TTTTCT
* *
19214 TTTTGTAAACATGTTTTGATATTTTAATTAAAAACTTAT
578 TTTTGTAAACATGTTTTGATCTTTGAATTAAAAACTTAT
Statistics
Matches: 1107, Mismatches: 144, Indels: 48
0.85 0.11 0.04
Matches are distributed among these distances:
646 129 0.12
647 34 0.03
648 382 0.35
649 5 0.00
659 11 0.01
660 537 0.49
661 9 0.01
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (642 bp):
TTCTTGGACAAACTTTCGAAATTGACAAAATTTTACGAGTTCTTTTATTAATCCAATTCATTAAA
GTATTAAAGACGATCCATTCCTTCCAGCAGTTTTTCGAACAATCCATTCTACGGAAATCGTATCA
TTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTATCTTTGAATTAAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGTTCTTGGAAAAATTTCGAACTTGTAGAACTTTTACGAGTTCTTTT
ATAGCTTCGTTCCTTAAAGTATCCAAGACGATCCAATCCTTCGAGCAATTTTTCGAACATTACAT
GCTCGGGAAGTCGCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTGAA
TTAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCGAACTTGTCA
AACTTTTACTAGTTCTTTTTGAATCTGGTTCCTTAAAGTGTTCAAGACGATCCATTCCTTCGAGT
AATTTTACGAACATTCCAAGCAAGGGAAATCGCATCATTTGGTCTAAATAGTTTTCTTTTTGTAA
ACATGTTTTGATCTTTGAATTAAAAACTTATTTACGGGAGAATTATTTCTATACTGA
Done.