Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001275.1 Kokia drynarioides strain JFW-HI SEQ_112662, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1141
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38


Found at i:30 original size:17 final size:17

Alignment explanation


    Indices: 8--67  Score: 61
    Period size: 17  Copynumber: 3.5  Consensus size: 17

          1 TTGACTT

                             
          8 TTAACCTTCCATCTTCC
          1 TTAACCTTCCATCTTCC

                       *       
         25 TTAACC-TCC-CCTTGACC
          1 TTAACCTTCCATCTT--CC

                              
         42 TTTAACCTTCCATCTTCC
          1 -TTAACCTTCCATCTTCC

             *      
         60 TCAACCTT
          1 TTAACCTT

         68 TCATATTTTT


Statistics
Matches: 35,  Mismatches: 3, Indels: 10
        0.73            0.06        0.21

Matches are distributed among these distances:
  15    3  0.09
  16    3  0.09
  17   15  0.43
  18    8  0.23
  19    3  0.09
  20    3  0.09

ACGTcount: A:0.18, C:0.42, G:0.02, T:0.38


Consensus pattern (17 bp):   
TTAACCTTCCATCTTCC
Done.