Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012754.1 Kokia drynarioides strain JFW-HI SEQ_127765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2887
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.28

Warning! 158 characters in sequence are not A, C, G, or T


Found at i:443 original size:45 final size:45

Alignment explanation


    Indices: 379--515  Score: 168
    Period size: 45  Copynumber: 3.0  Consensus size: 45

        369 GCATAGCTCA

                     *                 *        *        
        379 TCAAGCCAATGATATCAGCCTCAATTTAACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCATCGCAATAC

                                         *         *     
        424 TCAAGCCAAGGATATCAGCCTCAATTTGATGAGCCATCGTAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCATCGCAATAC

                 **   *       *                      *    
        469 TCAAGGGAAGAATATCAGGCT-AAGTTTGACGAGCCATCGCGATAC
          1 TCAAGCCAAGGATATCAGCCTCAA-TTTGACGAGCCATCGCAATAC

              
        514 TC
          1 TC

        516 TATTCCTCCC


Statistics
Matches: 79,  Mismatches: 12, Indels: 2
        0.85            0.13        0.02

Matches are distributed among these distances:
  44    2  0.03
  45   77  0.97

ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCATCGCAATAC
Done.