Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012756.1 Kokia drynarioides strain JFW-HI SEQ_127767, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78836
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Warning! 8 characters in sequence are not A, C, G, or T
Found at i:1612 original size:41 final size:41
Alignment explanation
Indices: 1567--1646 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
1557 GCTTATTGTA
1567 TTTTTAATTTGTTTGTTGTTTT-ATGAATTGTTTTAATATCG
1 TTTTTAATTTGTTTGTTGTTTTAATG-ATTGTTTTAATATCG
*
1608 TTTTTAATTTGTTTGTTGTTTTAATGTTTGTTTTAATAT
1 TTTTTAATTTGTTTGTTGTTTTAATGATTGTTTTAATAT
1647 TTTTAAGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 34 0.92
42 3 0.08
ACGTcount: A:0.19, C:0.01, G:0.14, T:0.66
Consensus pattern (41 bp):
TTTTTAATTTGTTTGTTGTTTTAATGATTGTTTTAATATCG
Found at i:4416 original size:4 final size:4
Alignment explanation
Indices: 4409--4433 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
4399 TATATATATG
4409 TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA T
4434 ATTAGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:24831 original size:132 final size:132
Alignment explanation
Indices: 24582--24859 Score: 412
Period size: 132 Copynumber: 2.1 Consensus size: 132
24572 AGGCCCATTT
* * * *
24582 CACAACTTGTGTGAGCATTACAGGTTATTTGGGTGTTGATCTTAGATGTCCTACCGATGGCTGAG
1 CACAACTCGTGTGAGCATTACAGGTTATATGGGTGCTGATCTTAGATGTCCTACCGATGGCTAAG
* * *
24647 GTCCGACATTTATTACGGATTCTCCACAGCTCGTGTAAGGAGCATCGCGTAGCCTAACATCTTGA
66 GTCCGACATTTATTACGGATTCTCCACAACTCGTGTAAGCAGCATCGCGTAGCCCAACATCTTGA
24712 CC
131 CC
* * *
24714 CACAGCTCGTGTGAGCATTACAGGTTATATGGGTGCTGGTCTTAGATGTCCTACTGATGGCTAAG
1 CACAACTCGTGTGAGCATTACAGGTTATATGGGTGCTGATCTTAGATGTCCTACCGATGGCTAAG
* * * * * *
24779 GTTCGACATTTATTGCGGATTCTCCACAACTCTTGTGAGCAGCATCGTGTAGCCCCACATCTTGA
66 GTCCGACATTTATTACGGATTCTCCACAACTCGTGTAAGCAGCATCGCGTAGCCCAACATCTTGA
24844 CC
131 CC
24846 CACAACTCGTGTGA
1 CACAACTCGTGTGA
24860 ACAGGCCCAT
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 129 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (132 bp):
CACAACTCGTGTGAGCATTACAGGTTATATGGGTGCTGATCTTAGATGTCCTACCGATGGCTAAG
GTCCGACATTTATTACGGATTCTCCACAACTCGTGTAAGCAGCATCGCGTAGCCCAACATCTTGA
CC
Found at i:32229 original size:20 final size:21
Alignment explanation
Indices: 32190--32229 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32180 TAGCTACGGA
*
32190 ATTAAATACACAACATATTTC
1 ATTAAATACACAACAAATTTC
*
32211 ATTAAA-ACATAACAAATTT
1 ATTAAATACACAACAAATTT
32230 TATTTTAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAAATACACAACAAATTTC
Found at i:35225 original size:304 final size:303
Alignment explanation
Indices: 34676--35282 Score: 1115
Period size: 304 Copynumber: 2.0 Consensus size: 303
34666 GATAGAGGGT
* *
34676 TTATACGATTTGGTGTATCACTTTGGGGTGTGTTTGTGTTATTCGTGAAAAATAAAGATGGATTG
1 TTATACGATTTGGTGTATCACTTTGGGGTGCGTTTGTGTTATTCATGAAAAATAAAGATGGATTG
34741 ATGCGGATGTGTATAGATTACAGGTAGTTGAATAAGGTGATAATCAAGAATAAGTACCCGTTGCC
66 ATGCGGATGTGTATAGATTACAGGTAGTTGAATAAGGTGATAATCAAGAATAAGTACCCGTTGCC
* * *
34806 TTGGATCGATAAGTTATTTGGTCAGCGAAAAGGTACAACCGTATTCTCCAAGATAGATCTCCGGT
131 TCGGATCGATAAGTTATTTGGTCAGCGAAAAGGTACAACCGTATTCCCCAAGATAGATCTCCAGT
34871 TAGGTTACTACCAAATGCGAGTGAAAGACTGCGATATAATGAAAATGACATTCAAGACTCGGTAT
196 TAGGTTACTACCAAATGCGAGTGAAAGACTGCGATATAATGAAAATGACATTCAAGACTCGGTAT
*
34936 AGTCATTACGAGTTCCTGGTTATGTCGTTTGGGTTGATTAATG
261 AGTCATTACGAGTTCCTGGTTATGTCGTTTGGGTTGACTAATG
*
34979 NTTATACGATTTGGTGTATCACTTTGGGGTGCGTTTTTGTTATTCATGAAAAATAAAGATGGATT
1 -TTATACGATTTGGTGTATCACTTTGGGGTGCGTTTGTGTTATTCATGAAAAATAAAGATGGATT
*
35044 GATGTGGATGTGTATAGATTACAGGTAGTTGAATAAGGTGATAATCAAGAATAAGTACCCGTTGC
65 GATGCGGATGTGTATAGATTACAGGTAGTTGAATAAGGTGATAATCAAGAATAAGTACCCGTTGC
35109 CTCGGATCGATAAGTTATTTGGTCAGCGAAAAGGTACAACCGTATTCCCCAAGATAGATCTCCAG
130 CTCGGATCGATAAGTTATTTGGTCAGCGAAAAGGTACAACCGTATTCCCCAAGATAGATCTCCAG
*
35174 TTAGGTTACTACCAGATGCGAGTGAAAGACTGCGATATAATGAAAATGACATTCAAGACTCGGTA
195 TTAGGTTACTACCAAATGCGAGTGAAAGACTGCGATATAATGAAAATGACATTCAAGACTCGGTA
*
35239 TAGTCATTACGAGTTCTTGGTTATGTCGTTTGGGTTGACTAATG
260 TAGTCATTACGAGTTCCTGGTTATGTCGTTTGGGTTGACTAATG
35283 CCCTCACAAC
Statistics
Matches: 293, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
304 293 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (303 bp):
TTATACGATTTGGTGTATCACTTTGGGGTGCGTTTGTGTTATTCATGAAAAATAAAGATGGATTG
ATGCGGATGTGTATAGATTACAGGTAGTTGAATAAGGTGATAATCAAGAATAAGTACCCGTTGCC
TCGGATCGATAAGTTATTTGGTCAGCGAAAAGGTACAACCGTATTCCCCAAGATAGATCTCCAGT
TAGGTTACTACCAAATGCGAGTGAAAGACTGCGATATAATGAAAATGACATTCAAGACTCGGTAT
AGTCATTACGAGTTCCTGGTTATGTCGTTTGGGTTGACTAATG
Found at i:39191 original size:31 final size:31
Alignment explanation
Indices: 39156--39237 Score: 164
Period size: 31 Copynumber: 2.6 Consensus size: 31
39146 TATTTTTTGC
39156 TTTGTGAAATTGAGATTGTTTTGTATATCGT
1 TTTGTGAAATTGAGATTGTTTTGTATATCGT
39187 TTTGTGAAATTGAGATTGTTTTGTATATCGT
1 TTTGTGAAATTGAGATTGTTTTGTATATCGT
39218 TTTGTGAAATTGAGATTGTT
1 TTTGTGAAATTGAGATTGTT
39238 CATTAAAGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.23, C:0.02, G:0.23, T:0.51
Consensus pattern (31 bp):
TTTGTGAAATTGAGATTGTTTTGTATATCGT
Found at i:39304 original size:12 final size:12
Alignment explanation
Indices: 39283--39313 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
39273 ACCTAAGATG
39283 TTGT-TATTGTT
1 TTGTATATTGTT
39294 TTGTATATTGTT
1 TTGTATATTGTT
39306 TTGTATAT
1 TTGTATAT
39314 CTCTTCGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (12 bp):
TTGTATATTGTT
Found at i:48183 original size:2 final size:2
Alignment explanation
Indices: 48172--48214 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
48162 AGTTTGTCAT
48172 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48213 TA
1 TA
48215 AAAGAAGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:48361 original size:53 final size:51
Alignment explanation
Indices: 48247--48364 Score: 132
Period size: 53 Copynumber: 2.3 Consensus size: 51
48237 TCCATTCGGT
* * * * *
48247 GTCATCGTGAGTAAATGAATCCATAATGAATTAAGGGTTCGATGACTTAGT
1 GTCATCGTGAGTATATGAATCCATAAGGAATCAAGGGTCCGATGACTTAGC
*
48298 GTCATCGTGAGTATATGAATTCCTATACGGAA-CAAGGGGTCCGATGACTATA-C
1 GTCATCGTGAGTATATGAA-TCC-ATAAGGAATCAA-GGGTCCGATGACT-TAGC
48351 GTCATCGTGAGTAT
1 GTCATCGTGAGTAT
48365 TAAATGAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
51 18 0.32
52 5 0.09
53 32 0.56
54 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
GTCATCGTGAGTATATGAATCCATAAGGAATCAAGGGTCCGATGACTTAGC
Found at i:49385 original size:13 final size:13
Alignment explanation
Indices: 49367--49392 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49357 ACACTACTCG
49367 AAATTTGAGTGTT
1 AAATTTGAGTGTT
49380 AAATTTGAGTGTT
1 AAATTTGAGTGTT
49393 TCAAAGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
AAATTTGAGTGTT
Found at i:57172 original size:51 final size:51
Alignment explanation
Indices: 57117--57416 Score: 332
Period size: 51 Copynumber: 5.9 Consensus size: 51
57107 TAAACGAAAG
57117 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
* *
57168 GGTCCAATGACTAAGAT-TCATCGTGAGTAAATGAATCCTTTACAGATTAAA
1 GGTCCGATGACTAAG-TGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
* * * * *
57219 TGTTCGATGACTAAGAGTAATCGTGAGTAAATGAATACTTTACGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
* ** * ** * * *
57270 GGTCCAATGGTTAAGTGTTATTTTGAGTAAATGAATCGTGTACGGATTATA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
* * * * * * * *
57321 GGTCCGATGACTGAGTGTAATCATGAGTAAATGAATCCATGATGAATTAAG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
* * *
57372 GGTCCGATGACTCAGTGTCATCGTGAGTATATGAATTCCTATACG
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACG
57417 AAACAAGGGG
Statistics
Matches: 201, Mismatches: 45, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
51 195 0.97
52 6 0.03
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATTAAA
Found at i:58222 original size:151 final size:151
Alignment explanation
Indices: 57948--58249 Score: 559
Period size: 151 Copynumber: 2.0 Consensus size: 151
57938 GTAAAGTTCT
57948 TGAGATTTAGCTTACTTGTTTCAGTAGAACCCATGTATGTTTTGGTAGAAGTGCAGGGTAGGAGA
1 TGAGATTTAGCTTACTTGTTTCAGTAGAACCCATGTATGTTTTGGTAGAAGTGCAGGGTAGGAGA
58013 GAGGTTGTACACTAATTTGAGTTGTATCGGTAGTTGTATGTATAGAAGTATCTATAGTTTGCATA
66 GAGGTTGTACACTAATTTGAGTTGTATCGGTAGTTGTATGTATAGAAGTATCTATAGTTTGCATA
58078 CTTATATCCGTAGAAGTTACA
131 CTTATATCCGTAGAAGTTACA
* * *
58099 TGAGATTTAGCTTACTTGTTTCGGTAGAACCCATGTCTGTTTTGTTAGAAGTGCAGGGTAGGAGA
1 TGAGATTTAGCTTACTTGTTTCAGTAGAACCCATGTATGTTTTGGTAGAAGTGCAGGGTAGGAGA
* *
58164 GAGGTTGTACACTGATTTGAGTTGTATCGGTAGTTGTATGTATAGAAGTATCTGTAGTTTGCATA
66 GAGGTTGTACACTAATTTGAGTTGTATCGGTAGTTGTATGTATAGAAGTATCTATAGTTTGCATA
58229 CTTATATCCGTAGAAGTTACA
131 CTTATATCCGTAGAAGTTACA
58250 GGATGGAAAT
Statistics
Matches: 146, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
151 146 1.00
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (151 bp):
TGAGATTTAGCTTACTTGTTTCAGTAGAACCCATGTATGTTTTGGTAGAAGTGCAGGGTAGGAGA
GAGGTTGTACACTAATTTGAGTTGTATCGGTAGTTGTATGTATAGAAGTATCTATAGTTTGCATA
CTTATATCCGTAGAAGTTACA
Found at i:58324 original size:21 final size:22
Alignment explanation
Indices: 58297--58356 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
58287 TAGATGCATG
58297 ACATGTATCGGTAGAAATTA-T
1 ACATGTATCGGTAGAAATTAGT
*
58318 ACTTGTATCGGTAG-AATTAGT
1 ACATGTATCGGTAGAAATTAGT
* *
58339 TCAGGTATCGGTAGAAAT
1 ACATGTATCGGTAGAAAT
58357 CTCAACTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 5 0.15
21 25 0.76
22 3 0.09
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (22 bp):
ACATGTATCGGTAGAAATTAGT
Found at i:59635 original size:21 final size:21
Alignment explanation
Indices: 59611--59661 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
59601 GTGCTAGTTT
* *
59611 TACCGATACAGGT-ATAACTTC
1 TACCGATACAAGTCAT-ACATC
59632 TACCGATACAAGTCATACATC
1 TACCGATACAAGTCATACATC
59653 TACCGATAC
1 TACCGATAC
59662 TAAAAACTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (21 bp):
TACCGATACAAGTCATACATC
Found at i:66698 original size:21 final size:22
Alignment explanation
Indices: 66660--66710 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
66650 GTTTTTAGTA
* *
66660 TCGGTAGAAGTAAGACTTGT-T
1 TCGGTAGAACTAACACTTGTAT
*
66681 TCGGTAGAACTATCACTTGTAT
1 TCGGTAGAACTAACACTTGTAT
66703 T-GGTAGAA
1 TCGGTAGAA
66711 TTCTACACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (22 bp):
TCGGTAGAACTAACACTTGTAT
Found at i:67137 original size:3 final size:3
Alignment explanation
Indices: 67131--67165 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
67121 ATAATGACAA
67131 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
67166 ACAACAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:67479 original size:167 final size:170
Alignment explanation
Indices: 67249--67592 Score: 475
Period size: 168 Copynumber: 2.0 Consensus size: 170
67239 TCAAAATGAC
* * * *
67249 ATAATTTATGCCACGTGTCACAATATTATTATGCCACAGTGTCCCAAACTTAACGGCGTTAGATT
1 ATAATTTATGACACATGTCACAATATTAGTATGCCACAGTGTCCCAAACTTAACGACGTTAGATT
* * * * *
67314 TAGGTACCAAACCAGTGGACGAAAAAAAATTCGGGTACCAATCTTG-GA-TAAAAAAATTATAAG
66 CAGGTACCAAACCAATGGACGAAAAAAAATTCGAGTACCAATC-TGAGACAAAAAAAACTATAAG
* * *
67377 TACCAAT-TTGGCAGAAGTGGAAAAGTTTAGGTACTAATTTT
130 TACCAATCTAGG-AGAAGTAGAAAAGTTCAGGTACTAATTTT
*
67418 ATAA-TTATGACACATGTCACAATATTAGTATGCCACA-TGTCCCAAACTTAACGATGTTAGATT
1 ATAATTTATGACACATGTCACAATATTAGTATGCCACAGTGTCCCAAACTTAACGACGTTAGATT
* *
67481 CAGGTACCAAACCAATGGACGGAAAAAAATTCGAGTACCAATCTGAGACAAAAAAAACTATAGGT
66 CAGGTACCAAACCAATGGACGAAAAAAAATTCGAGTACCAATCTGAGACAAAAAAAACTATAAGT
* *
67546 ACCAATCTAGGAGAAGTAGATAAGTTCATGTACTAATTTT
131 ACCAATCTAGGAGAAGTAGAAAAGTTCAGGTACTAATTTT
67586 AT-ATTTA
1 ATAATTTA
67593 AGCCTAATAT
Statistics
Matches: 154, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
166 2 0.01
167 66 0.43
168 79 0.51
169 7 0.05
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (170 bp):
ATAATTTATGACACATGTCACAATATTAGTATGCCACAGTGTCCCAAACTTAACGACGTTAGATT
CAGGTACCAAACCAATGGACGAAAAAAAATTCGAGTACCAATCTGAGACAAAAAAAACTATAAGT
ACCAATCTAGGAGAAGTAGAAAAGTTCAGGTACTAATTTT
Found at i:74902 original size:51 final size:50
Alignment explanation
Indices: 74840--74989 Score: 196
Period size: 51 Copynumber: 3.0 Consensus size: 50
74830 TCCAAATAGA
* *
74840 ACTAAACTTTTTTTTTCTTTTATTTTGATTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTTTTTTTTATTTTATTTT-ATTAGAATAAGGTTTTTCAACCTT
*
74891 ACTACACTTTTTTTTTATTTTATTTTAATTAGAATAAGGTTTTTTAACCTT
1 ACTACACTTTTTTTTTATTTTATTTT-ATTAGAATAAGGTTTTTCAACCTT
** * *
74942 ACTACAC--TTCATCTATTTAACTTTTATTAGAATAAGGTTTTTCAACCT
1 ACTACACTTTTTTTTTATTTTA-TTTTATTAGAATAAGGTTTTTCAACCT
74990 ATAAATAGAC
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
49 31 0.35
50 4 0.04
51 54 0.61
ACGTcount: A:0.28, C:0.13, G:0.07, T:0.52
Consensus pattern (50 bp):
ACTACACTTTTTTTTTATTTTATTTTATTAGAATAAGGTTTTTCAACCTT
Found at i:78177 original size:37 final size:37
Alignment explanation
Indices: 78134--78237 Score: 100
Period size: 37 Copynumber: 2.7 Consensus size: 37
78124 CTCGAAGCAA
*
78134 TAAAGTGACACCCAGTGTCTCATCGATCTAGCTAAAG
1 TAAAGTGACACCCAGTGTCTCATCGATCTAGCCAAAG
** ** * *
78171 TAAAGTGGTACCCAGTACCTCATCGAATCTATCCGAAG
1 TAAAGTGACACCCAGTGTCTCATCG-ATCTAGCCAAAG
*
78209 TAAAATAATGACACCCAGTGTCTCATCGA
1 T--AA-AGTGACACCCAGTGTCTCATCGA
78238 CTCAAGGTCG
Statistics
Matches: 51, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 21 0.41
38 10 0.20
40 3 0.06
41 17 0.33
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (37 bp):
TAAAGTGACACCCAGTGTCTCATCGATCTAGCCAAAG
Done.