genome.fa.s12758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012758.1 Kokia drynarioides strain JFW-HI SEQ_127769, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66220

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1975--2003	5	5.8	5	100	0	58	0	37	0	62	0.96
5656--5817	50	3.4	48	76	12	156	25	15	22	36	1.93
8642--8724	38	2.2	36	79	10	94	30	8	25	36	1.85
15196--15239	22	2.0	22	100	0	88	36	13	18	31	1.90
19747--19780	11	3.2	11	83	8	52	52	20	0	26	1.46
20551--20611	13	4.6	13	78	11	61	37	18	1	42	1.60
20789--20820	16	2.0	16	100	0	64	25	31	31	12	1.92
20782--20991	41	5.2	41	75	2	156	36	27	17	18	1.94
20782--20992	82	2.6	81	78	5	212	36	27	17	18	1.93
22385--22426	21	2.0	22	85	4	59	23	23	19	33	1.97
31092--31144	27	2.0	25	86	13	72	30	20	1	47	1.61
34024--34087	3	22.3	3	77	15	64	1	29	0	68	0.99
33844--34576	359	2.0	356	80	5	793	22	26	16	34	1.95
34383--34466	3	29.0	3	81	11	104	1	30	0	67	0.98
38288--38451	41	4.0	41	80	3	186	39	26	15	18	1.91
38801--38921	39	3.2	39	83	2	147	29	4	15	49	1.66
38957--39019	32	2.0	32	93	0	108	31	11	19	38	1.86
41851--41882	16	1.9	17	93	6	57	40	3	18	37	1.67
44435--44504	27	2.6	27	93	0	122	41	12	24	21	1.88
46906--47037	66	2.0	66	100	0	264	18	19	21	40	1.91
54385--54436	21	2.5	21	100	0	104	23	19	28	28	1.98
57122--57158	2	18.5	2	94	0	65	54	45	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57817--57857	17	2.4	17	84	15	50	58	12	14	14	1.63
63321--63774	227	2.0	227	96	0	829	29	17	20	32	1.96

Tables:   1

The End!