Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012759.1 Kokia drynarioides strain JFW-HI SEQ_127770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3564
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33


Found at i:1877 original size:42 final size:41

Alignment explanation


    Indices: 1811--1997  Score: 148
    Period size: 42  Copynumber: 4.5  Consensus size: 41

       1801 CCAATATGAT

                             * *       *              
       1811 ATGATGCACTAAGGTGCCAAATATATTGCTTCGGACTTTTCG
          1 ATGATGCACTAA-GTGCTAGATATATTACTTCGGACTTTTCG

                                       *   *  *       
       1853 ATGATGCACTGAAGTGCTAGATATATTTCTTTGGGCTTTTCG
          1 ATGATGCACT-AAGTGCTAGATATATTACTTCGGACTTTTCG

                    *   *   **              *          
       1895 ATGATGCATTGAGGTGGAAGATATATTACTTCAGAC-TTTCTG
          1 ATGATGCACT-AAGTGCTAGATATATTACTTCGGACTTTTC-G

                       *                  *             
       1937 ATGATGCA--ATGTGCTAGATATATTACTTTGGTTA-TATTTCG
          1 ATGATGCACTAAGTGCTAGATATATTACTTCGG--ACT-TTTCG

                 *     *        
       1978 ATGATACACTATGTGCTAGA
          1 ATGATGCACTAAGTGCTAGA

       1998 ATGATATGAA


Statistics
Matches: 118,  Mismatches: 19, Indels: 15
        0.78            0.12        0.10

Matches are distributed among these distances:
  39   18  0.15
  41   13  0.11
  42   75  0.64
  43   12  0.10

ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37


Consensus pattern (41 bp):   
ATGATGCACTAAGTGCTAGATATATTACTTCGGACTTTTCG
Done.