genome.fa.s12763.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012763.1 Kokia drynarioides strain JFW-HI SEQ_127775, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  269682

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958--2018	27	2.3	27	85	0	86	26	29	21	22	1.99
6637--6737	35	2.8	35	73	11	98	37	18	11	31	1.87
7396--7425	15	1.9	16	93	6	53	36	10	13	40	1.78
13675--13704	9	3.3	9	95	0	51	20	36	0	43	1.52
13794--13838	21	2.1	22	87	4	65	31	6	13	48	1.68
21497--21674	96	1.9	96	91	0	293	26	10	28	34	1.90
23319--23484	23	7.2	23	83	0	215	37	6	12	44	1.66
23319--23478	69	2.3	69	89	0	239	36	5	12	45	1.66
27875--28189	80	3.9	81	84	3	370	32	23	17	26	1.96
29694--30010	23	13.8	23	87	0	445	31	5	15	47	1.68
30442--30616	25	7.0	25	80	9	196	46	9	21	22	1.80
30442--30612	50	3.4	50	85	4	238	46	9	21	22	1.80
33941--33974	16	2.0	16	88	11	50	26	0	2	70	1.01
39456--39540	42	2.0	42	93	0	143	50	3	28	17	1.62
47845--47978	45	3.0	44	74	8	128	33	19	20	26	1.97
47840--48026	88	2.1	88	84	3	234	32	17	22	26	1.97
47986--48037	24	2.2	23	82	3	59	25	9	34	30	1.88
57729--57775	22	2.1	22	96	0	85	38	6	8	46	1.60
60956--60993	12	3.2	12	84	0	58	42	13	10	34	1.78
63687--63750	25	2.6	25	90	5	94	32	21	20	25	1.97
78943--78990	17	2.8	17	77	0	51	22	16	8	52	1.71
84702--84743	22	1.9	22	85	9	59	61	0	11	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95120--95162	21	2.0	21	100	0	86	27	18	4	48	1.68
100785--100819	18	1.9	18	94	0	61	20	25	25	28	1.99
107199--107236	11	3.4	11	92	3	58	76	7	13	2	1.11
107919--108326	42	10.0	42	79	5	440	23	15	23	36	1.94
107979--108046	34	2.0	34	82	0	82	23	14	26	35	1.94
107938--108166	76	2.9	76	82	5	233	23	15	23	37	1.93
109434--109496	20	3.2	19	72	14	56	47	0	11	41	1.39
109193--109607	140	2.9	144	87	5	574	44	3	9	41	1.55
110165--110205	16	2.6	15	85	11	55	24	4	0	70	1.06
110300--110324	9	2.8	9	100	0	50	32	12	0	56	1.36
110932--110961	3	10.0	3	100	0	60	66	0	0	33	0.92
138413--138501	40	2.2	40	79	2	97	33	31	12	22	1.91
144335--144370	18	2.0	18	94	0	63	61	5	8	25	1.46
144332--144376	23	2.0	23	91	8	74	60	6	8	24	1.51
144331--144382	23	2.2	24	83	10	72	59	7	9	23	1.54
146650--146679	15	2.0	15	93	0	51	63	10	13	13	1.52
149463--149504	18	2.3	18	95	0	75	38	11	11	38	1.79
155454--155496	18	2.5	17	76	3	50	34	0	2	62	1.08
155606--155644	21	1.9	20	89	5	60	66	0	0	33	0.92
161500--161531	2	16.0	2	100	0	64	50	0	0	50	1.00
161607--161716	24	4.4	24	72	10	76	32	18	29	20	1.96
161610--161761	77	2.0	77	86	1	216	33	17	27	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161664--161769	24	4.2	24	70	9	68	33	16	27	21	1.95
161771--161883	56	2.0	56	84	3	147	38	14	23	23	1.92
161687--161906	52	4.2	52	80	5	253	36	16	25	22	1.94
169716--169794	37	2.1	38	81	6	90	31	26	20	21	1.98
170571--170597	14	1.9	14	100	0	54	0	40	0	59	0.98
178359--178394	18	2.1	18	89	5	56	33	25	0	41	1.55
178820--178859	21	1.9	21	84	0	53	2	12	2	82	0.87
182049--182090	11	3.9	11	84	6	59	45	0	0	54	0.99
182016--182090	22	3.7	21	76	20	61	45	0	0	54	0.99
183188--183248	17	3.8	16	73	18	54	47	0	0	52	1.00
191360--191456	44	2.4	39	82	15	140	41	22	23	12	1.88
191370--191467	44	2.2	44	100	0	196	42	19	25	12	1.86
192389--192618	115	2.0	114	98	0	442	27	17	26	27	1.98
199408--199463	22	2.5	22	97	0	103	25	21	25	28	1.99
214102--214244	50	2.8	50	76	7	146	32	25	15	26	1.95
214122--214241	25	4.8	25	73	6	93	31	23	15	29	1.95
221485--221523	5	7.8	5	88	0	60	76	2	20	0	0.90
245406--245487	28	2.9	28	88	0	119	26	9	18	45	1.80
246595--246745	76	2.0	76	98	0	293	31	14	19	33	1.92
249571--249618	18	2.8	17	81	9	53	56	10	12	20	1.65
260662--260703	14	3.1	14	75	6	50	0	33	0	66	0.92
260660--260722	27	2.3	26	76	13	63	3	36	0	60	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261104--261135	12	2.8	12	86	13	50	78	0	12	9	0.97

Tables:   1

The End!