genome.fa.s12766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012766.1 Kokia drynarioides strain JFW-HI SEQ_127778, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  264489

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981--2040	12	4.8	12	78	15	59	0	30	1	68	0.99
1981--2040	27	2.2	27	82	11	70	0	30	1	68	0.99
3223--3273	24	2.3	22	83	16	61	43	27	7	21	1.80
4959--5015	20	2.8	20	77	20	55	40	10	1	47	1.48
17736--17781	15	3.0	15	84	12	58	78	0	19	2	0.86
22457--22502	23	2.0	23	100	0	92	34	13	21	30	1.91
23714--23752	20	2.0	20	85	10	53	38	7	0	53	1.30
38484--38587	51	2.0	51	94	0	181	21	24	10	44	1.83
43699--43923	112	2.0	111	97	0	423	43	15	21	19	1.88
47484--47715	45	5.1	45	84	4	281	31	25	17	25	1.97
47484--47715	89	2.6	89	84	6	288	31	25	17	25	1.97
55593--55743	57	2.6	58	80	5	162	50	2	3	43	1.32
55913--55939	14	1.9	14	100	0	54	37	18	7	37	1.79
74559--74639	23	3.5	23	72	12	85	34	11	17	37	1.85
78188--78295	24	4.4	24	85	1	135	27	17	21	33	1.96
95887--95931	6	8.0	6	78	14	51	42	0	2	55	1.12
95889--95931	17	2.6	17	88	3	70	39	0	2	58	1.11
97637--97842	29	7.1	28	72	13	132	34	26	2	36	1.70
97750--97842	28	3.3	27	79	11	98	32	24	1	41	1.62
97701--97930	29	7.9	29	75	10	123	34	24	3	37	1.71
98263--98448	97	1.9	97	89	4	286	28	17	15	38	1.90
107185--107396	78	2.7	78	81	2	221	23	27	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107392--107429	18	2.1	18	95	0	67	23	26	10	39	1.87
107416--107724	78	3.9	78	82	0	348	24	29	19	25	1.98
107518--107762	39	6.3	38	74	7	188	26	30	19	23	1.98
107520--107760	78	3.1	75	82	6	216	26	30	19	24	1.98
109739--110112	30	12.9	29	71	12	180	33	23	4	39	1.74
109781--110001	59	3.9	56	79	8	171	33	22	4	40	1.73
109842--110112	87	3.1	87	78	8	211	32	23	4	39	1.75
110033--110131	28	3.4	29	72	8	76	38	24	3	34	1.71
110389--110578	97	2.0	96	85	3	256	30	17	14	38	1.89
124061--124085	11	2.3	11	100	0	50	44	0	8	48	1.32
129683--129739	25	2.3	24	82	11	80	35	0	5	59	1.20
138554--138593	10	3.8	11	78	21	50	62	2	35	0	1.09
139744--139787	23	1.9	23	95	0	79	34	18	22	25	1.96
146750--146799	19	2.8	17	81	9	55	78	0	20	2	0.86
146766--146797	15	2.1	16	94	5	57	78	0	21	0	0.76
148724--148785	29	2.1	29	84	0	79	17	22	3	56	1.55
155037--155106	35	2.0	35	91	0	113	32	20	18	28	1.96
165681--165748	32	2.1	32	91	0	109	36	16	8	38	1.80
168445--168512	21	3.3	19	78	15	64	45	2	1	50	1.26
168464--168589	33	3.9	32	73	18	95	47	2	0	49	1.20
168543--168568	9	2.9	9	100	0	52	53	0	0	46	1.00
168549--168591	22	2.0	22	90	4	70	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175646--175695	23	2.2	23	100	0	100	36	4	22	38	1.73
179364--179409	3	15.3	3	100	0	92	65	0	0	34	0.93
180517--180941	29	14.5	28	75	11	293	35	30	2	31	1.71
180510--180941	59	7.3	58	84	6	464	35	30	2	31	1.71
184625--184691	32	2.1	32	97	0	125	28	11	10	49	1.73
189004--189078	36	2.1	36	97	0	141	36	20	14	29	1.92
199127--199235	40	2.7	41	77	4	114	24	14	29	31	1.95
204289--204379	46	2.0	46	95	0	164	28	20	19	30	1.97
204548--204659	41	2.8	40	81	5	118	24	14	29	32	1.94
207951--207988	18	2.1	18	90	0	58	71	13	13	2	1.26
214720--214780	30	2.0	31	84	9	81	63	3	1	31	1.20
221259--221312	27	1.9	29	82	14	69	18	9	0	72	1.11
228280--228314	16	2.2	16	90	10	54	28	17	2	51	1.59
229232--229272	21	2.0	21	95	0	73	19	17	31	31	1.95
229810--229842	12	2.7	13	90	9	52	24	6	0	69	1.10
230849--231043	58	3.3	59	78	7	191	39	4	22	34	1.73
230967--231058	29	3.1	31	79	9	118	38	1	22	38	1.62
230845--231216	59	6.3	59	78	12	209	38	5	22	33	1.76
230974--231076	30	3.5	29	79	10	102	36	0	22	39	1.61
230995--231216	30	7.6	28	70	17	105	39	4	22	33	1.75
230995--231216	29	7.6	28	70	15	130	39	4	22	33	1.75
230967--231253	59	4.8	58	81	7	233	39	4	22	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231198--231348	30	5.1	29	82	8	169	35	3	25	35	1.72
231169--231348	60	3.0	58	83	7	191	36	3	25	35	1.74
232118--232173	20	2.8	20	94	2	94	23	21	17	37	1.94
233274--233304	13	2.4	13	94	0	53	16	32	12	38	1.86
235871--236071	99	2.0	99	96	0	366	22	21	16	38	1.92
238588--238692	29	3.6	28	67	15	79	35	5	25	33	1.80
238602--238814	59	3.6	59	76	8	193	40	7	21	30	1.82
238599--238814	118	1.8	117	83	3	281	40	7	21	30	1.81
238591--238843	118	2.2	117	79	8	264	39	7	22	30	1.81
238591--238841	59	4.3	58	72	15	178	39	7	21	31	1.82
238832--238897	28	2.3	29	81	5	71	33	1	27	37	1.66
238790--239030	30	8.1	30	73	11	131	36	4	25	33	1.77
246246--246292	18	2.8	17	87	9	62	19	12	10	57	1.64
246896--246938	6	6.8	6	84	10	59	76	0	23	0	0.78
246895--246938	19	2.3	20	88	7	65	75	0	25	0	0.81
246895--246936	13	3.1	14	81	18	54	73	0	26	0	0.83
246898--246936	21	1.9	20	89	5	60	76	0	23	0	0.78
252277--252665	29	13.3	28	70	12	151	35	25	4	34	1.75
252269--252673	59	6.9	59	80	7	389	35	25	4	35	1.76
252630--252719	29	3.1	28	70	17	67	31	23	8	36	1.86
252747--252807	28	2.1	29	90	3	97	36	24	9	29	1.88
256762--256887	63	2.0	63	95	0	225	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258435--258502	6	11.5	6	80	12	52	82	2	8	5	0.93
259713--259852	50	2.8	50	83	2	176	42	25	22	10	1.85
260364--261219	206	4.2	206	88	2	1165	35	19	22	21	1.96
262310--262347	13	3.0	13	88	3	51	57	0	5	36	1.21
263704--264061	29	12.2	29	75	6	303	36	26	3	34	1.73
263713--264071	59	6.1	59	81	8	220	34	26	3	35	1.74

Tables:   1

The End!