Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012774.1 Kokia drynarioides strain JFW-HI SEQ_127786, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1723
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:468 original size:21 final size:21

Alignment explanation


    Indices: 444--486  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        434 CATTAGACTT

                                 
        444 CCAATTGCGCTATAGCCCTGC
          1 CCAATTGCGCTATAGCCCTGC

                                 
        465 CCAATTGCGCTATAGCCCTGC
          1 CCAATTGCGCTATAGCCCTGC

             
        486 C
          1 C

        487 TTTATTCTCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.19, C:0.40, G:0.19, T:0.23


Consensus pattern (21 bp):   
CCAATTGCGCTATAGCCCTGC
Done.