Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012776.1 Kokia drynarioides strain JFW-HI SEQ_127788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5758
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:1410 original size:62 final size:62

Alignment explanation


    Indices: 1313--1436  Score: 248
    Period size: 62  Copynumber: 2.0  Consensus size: 62

       1303 TTTTAATCCT

                                                                          
       1313 GTGACACTTGCACCTTGTATGGTATATAGCCTGAAGCCATTGAAATTATGTTAGCCACCTAA
          1 GTGACACTTGCACCTTGTATGGTATATAGCCTGAAGCCATTGAAATTATGTTAGCCACCTAA

                                                                          
       1375 GTGACACTTGCACCTTGTATGGTATATAGCCTGAAGCCATTGAAATTATGTTAGCCACCTAA
          1 GTGACACTTGCACCTTGTATGGTATATAGCCTGAAGCCATTGAAATTATGTTAGCCACCTAA

       1437 CTTGACGTCA


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  62   62  1.00

ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Consensus pattern (62 bp):   
GTGACACTTGCACCTTGTATGGTATATAGCCTGAAGCCATTGAAATTATGTTAGCCACCTAA
Done.