genome.fa.s12778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012778.1 Kokia drynarioides strain JFW-HI SEQ_127790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  288136

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661--724	29	2.2	29	86	5	85	39	23	3	34	1.71
3153--3198	22	2.0	24	84	16	62	45	2	2	50	1.26
4133--4188	3	18.7	3	88	0	85	35	1	1	60	1.17
11692--11754	30	2.1	30	93	0	108	49	3	11	36	1.54
14306--14339	2	17.0	2	100	0	68	50	0	0	50	1.00
15727--15964	117	2.1	114	84	5	300	38	21	10	30	1.86
18951--19257	6	55.3	6	70	19	82	48	1	11	38	1.47
18951--18998	16	2.9	16	75	3	51	54	0	10	35	1.35
18986--19093	17	6.7	17	69	24	56	49	1	6	42	1.39
18951--19154	78	2.6	78	90	0	311	49	0	10	39	1.44
18959--19250	11	26.4	11	68	12	78	49	1	9	39	1.45
18992--19256	111	2.4	110	81	8	328	48	1	10	39	1.47
19022--19258	111	2.1	112	89	1	370	47	1	12	38	1.49
19353--19408	20	2.8	20	91	0	85	32	35	8	23	1.86
23350--23537	5	33.8	6	71	18	56	50	1	11	36	1.48
23295--23429	61	2.2	60	93	1	225	48	1	10	39	1.46
23363--23407	23	2.0	23	82	8	56	48	0	15	35	1.45
23436--23512	34	2.3	33	80	14	86	55	1	11	31	1.44
23348--23527	99	1.8	95	80	10	211	50	1	10	37	1.47
23794--23858	21	3.2	21	66	16	55	53	3	1	41	1.25
23812--23874	31	2.0	31	82	11	76	53	3	1	41	1.26
46562--46633	31	2.3	31	92	0	117	20	33	26	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68781--68932	75	2.0	75	100	0	304	35	15	9	39	1.80
72053--72107	6	9.2	6	91	0	92	52	0	29	18	1.45
73129--73254	61	2.1	60	83	7	157	42	15	3	38	1.63
73254--73283	15	2.0	15	93	0	51	56	0	0	43	0.99
73465--73503	21	1.9	20	89	5	60	20	7	5	66	1.36
73465--73510	21	2.2	21	84	7	58	21	6	6	65	1.39
82896--82935	6	6.7	6	100	0	80	0	15	0	85	0.61
83422--83488	27	2.4	28	80	11	68	35	0	1	62	1.04
83677--83743	30	2.2	31	84	7	84	40	1	14	43	1.55
90420--90456	14	2.6	14	84	16	58	51	29	2	16	1.58
95428--95656	79	2.9	78	80	4	262	33	12	10	42	1.78
96096--96165	31	2.3	31	92	0	113	37	11	15	35	1.84
100447--100568	60	2.0	61	93	4	212	22	13	26	38	1.90
101432--101465	16	2.1	16	88	0	50	26	0	17	55	1.42
122378--122454	32	2.4	33	77	4	84	62	5	6	25	1.41
125431--125460	14	2.1	14	93	0	51	33	26	6	33	1.83
126906--126961	13	4.3	13	80	14	62	83	1	14	0	0.72
126904--126949	21	2.2	20	88	3	65	86	2	10	0	0.64
127866--128005	48	2.9	47	78	5	145	34	15	28	21	1.94
128295--128907	40	15.5	40	71	12	345	32	23	16	26	1.96
128301--128895	79	7.5	79	80	4	533	33	23	16	26	1.96
128301--128895	158	3.8	159	80	4	623	33	23	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155945--156020	28	2.7	28	79	4	82	32	19	22	25	1.97
161419--161456	17	2.2	17	100	0	76	23	5	23	47	1.72
164579--164624	25	1.9	23	86	8	65	41	2	2	54	1.25
170507--170549	5	7.8	5	80	19	50	23	2	0	74	0.93
170507--170552	17	2.7	17	86	6	67	23	2	0	73	0.94
170507--170549	22	2.0	22	95	0	77	23	2	0	74	0.93
171479--171567	29	2.9	30	75	19	94	78	1	14	5	0.98
171477--171565	19	4.3	20	75	17	76	79	1	13	5	0.96
172586--172631	25	1.9	23	86	8	65	36	2	6	54	1.39
173280--173335	29	1.9	29	100	0	112	28	10	19	41	1.85
180454--180531	17	4.5	17	83	1	75	21	24	7	46	1.77
186345--186466	25	4.8	25	80	7	102	30	25	19	24	1.98
186373--186466	25	3.7	25	83	7	127	29	28	19	22	1.98
192962--193220	51	5.1	51	68	14	137	49	8	2	39	1.45
192737--193455	151	4.8	148	83	7	846	46	8	3	41	1.52
192737--193458	150	4.8	148	84	8	842	46	8	3	40	1.52
195832--195897	28	2.4	28	94	2	116	40	22	13	22	1.89
207414--207563	19	6.9	22	72	25	97	22	7	1	68	1.22
207447--207536	17	5.4	17	69	26	68	21	6	1	71	1.16
207417--207563	66	2.3	64	96	2	267	22	6	1	69	1.20
207441--207555	24	5.2	24	73	23	85	20	6	1	71	1.17
209827--209868	12	3.7	12	84	9	52	52	19	11	16	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211791--212038	125	2.0	125	88	0	370	23	18	24	33	1.96
217733--217807	24	3.1	24	90	0	105	25	21	24	29	1.99
218405--218451	24	2.0	24	87	8	69	23	8	27	40	1.83
226873--226952	39	2.0	40	90	2	126	30	17	22	30	1.97
227767--228014	125	2.0	125	85	4	340	27	18	21	32	1.97
229623--229673	25	2.0	25	100	0	102	39	25	3	31	1.74
234448--234502	26	2.1	26	100	0	110	54	10	12	21	1.68
239747--239799	18	2.9	18	74	0	52	45	26	15	13	1.82
258768--258820	18	3.0	18	80	17	58	52	1	1	43	1.23
260002--260035	8	4.0	8	88	11	50	17	0	0	82	0.67
269123--269583	39	11.7	38	72	11	252	30	26	18	25	1.98
269123--269623	79	6.4	79	85	2	630	30	25	17	25	1.97
269115--269623	159	3.2	158	83	4	618	30	26	17	25	1.97
270105--270137	11	3.1	11	86	8	50	21	0	0	78	0.75
270103--270135	16	2.2	15	89	10	50	18	0	0	81	0.68
278951--279077	50	2.5	50	80	0	137	33	13	29	23	1.93
279158--279692	39	13.6	39	69	11	205	31	23	17	26	1.97
279133--279692	79	7.2	80	79	9	453	31	24	17	26	1.97
279133--279691	158	3.6	154	81	6	594	32	24	17	26	1.97
280151--280183	15	2.1	16	94	5	59	21	0	0	78	0.75
281418--281467	26	1.9	26	84	8	66	38	4	4	54	1.38
284856--284913	19	2.6	23	76	20	61	46	5	6	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285882--285921	17	2.3	18	86	4	55	47	0	2	50	1.14
285894--285934	21	2.0	21	85	4	57	48	0	0	51	1.00
288053--288087	12	2.9	12	82	0	52	25	22	0	51	1.48
288053--288087	18	1.9	18	94	0	61	25	22	0	51	1.48

Tables:   1

The End!