genome.fa.s12782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012782.1 Kokia drynarioides strain JFW-HI SEQ_127794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188170

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--43	2	20.5	2	87	5	55	50	0	2	47	1.14
542--593	14	3.7	14	76	5	52	1	51	0	46	1.12
646--686	14	2.9	14	77	0	55	2	39	2	56	1.26
19876--19943	31	2.2	31	84	5	84	41	11	8	38	1.73
26109--26143	16	2.2	16	100	0	70	37	14	11	37	1.82
26511--26637	23	5.4	23	79	7	139	44	21	21	12	1.85
35157--35183	12	2.2	12	100	0	54	18	0	0	81	0.69
35654--35849	95	2.1	96	86	1	270	46	15	10	27	1.79
41441--41471	16	2.0	16	93	6	55	45	3	6	45	1.45
49399--49551	80	1.9	80	90	0	243	42	11	7	38	1.70
52922--52946	12	2.1	12	100	0	50	32	0	8	60	1.26
56780--56848	20	3.5	21	75	16	76	44	15	18	20	1.86
56777--56854	38	2.1	38	97	0	147	44	15	19	20	1.86
65597--65780	59	3.0	61	75	12	187	39	2	6	51	1.42
65891--65932	21	2.0	20	86	4	57	30	7	16	45	1.74
67467--67491	2	12.5	2	100	0	50	52	0	0	48	1.00
68028--68075	21	2.3	21	89	7	71	10	10	18	60	1.57
73028--73099	30	2.4	31	86	6	94	47	16	13	22	1.82
74013--74139	22	5.3	24	83	14	140	38	22	27	11	1.89
74056--74148	22	4.1	22	87	8	141	39	25	23	10	1.87
74056--74148	47	2.0	44	89	6	141	39	25	23	10	1.87
74332--74372	21	2.0	21	85	9	57	48	12	0	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76906--76951	21	2.2	21	84	7	58	43	2	0	54	1.12
86844--86873	11	2.6	12	94	5	53	26	0	0	73	0.84
88586--88623	19	1.9	19	89	5	58	31	13	2	52	1.54
90856--91025	86	2.0	86	91	1	277	31	12	13	42	1.81
91104--91146	12	3.4	12	81	12	50	81	6	4	6	0.98
92959--93158	101	2.0	101	100	0	400	19	31	11	39	1.86
98089--98249	28	5.7	29	73	16	99	22	22	8	45	1.79
98102--98209	29	3.8	29	79	11	125	24	22	7	46	1.77
98069--98225	28	5.6	26	71	17	75	25	20	8	45	1.78
98032--98283	114	2.2	114	82	6	289	23	22	9	44	1.83
98016--98225	57	3.7	56	80	9	237	24	22	9	43	1.83
99297--99336	3	13.3	3	94	0	71	35	2	0	62	1.09
106253--106302	24	2.1	24	81	7	57	70	2	0	28	0.99
106293--106351	20	2.8	20	74	16	57	61	11	1	25	1.40
108114--108199	17	4.9	17	79	11	84	44	2	3	50	1.32
108861--108928	9	7.2	9	74	9	55	52	4	2	39	1.36
108885--108960	3	25.3	3	73	5	55	56	3	3	35	1.36
109280--109413	65	2.0	66	84	4	173	22	28	39	9	1.85
110017--110101	29	2.8	30	78	3	91	36	23	5	34	1.79
110027--110216	30	6.4	29	75	11	154	32	26	5	34	1.80
110027--110304	59	4.8	60	76	11	222	32	26	5	35	1.80
117901--117925	6	4.2	6	100	0	50	84	0	16	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118742--119013	123	2.2	123	85	1	357	39	15	22	22	1.91
118912--119504	201	2.9	204	80	4	592	36	19	21	22	1.95
118911--119509	206	2.9	203	79	4	611	36	19	21	22	1.95
119776--119821	17	2.7	17	89	0	65	39	2	2	56	1.24
120467--120542	9	8.0	9	75	10	62	52	5	2	39	1.38
120499--120546	3	16.0	3	77	0	51	60	4	2	33	1.27
120593--120622	3	10.0	3	100	0	60	33	0	0	66	0.92
121673--121864	30	6.4	30	77	7	169	34	27	3	33	1.75
121673--121955	59	4.8	58	77	11	217	33	28	4	33	1.77
121673--121871	89	2.2	88	81	13	237	34	28	4	33	1.76
121890--122015	28	4.4	29	80	6	114	31	30	5	31	1.81
121702--122000	59	5.1	57	73	6	165	34	28	4	33	1.77
125580--125613	14	2.3	15	90	5	52	29	14	2	52	1.56
131277--131342	28	2.3	30	92	5	109	54	0	0	45	0.99
131281--131333	15	3.6	15	72	12	56	47	0	0	52	1.00
136743--136822	23	3.5	22	87	3	106	36	28	22	12	1.91
136715--136887	23	7.4	23	78	10	94	38	23	24	12	1.90
138899--138965	24	2.8	24	83	2	89	26	11	7	53	1.64
139659--139700	22	1.9	22	90	0	66	35	0	7	57	1.26
139681--139746	6	10.8	6	74	9	62	40	3	0	56	1.15
139681--139745	18	3.6	18	88	10	96	40	3	0	56	1.15
140527--140561	12	2.9	12	86	0	52	54	0	5	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140523--140575	27	2.0	27	85	7	72	52	1	5	39	1.36
141610--141923	28	11.0	29	72	15	194	35	27	3	33	1.74
141647--141689	21	2.0	21	95	0	77	34	30	2	32	1.71
141617--141712	50	1.9	51	89	6	151	35	27	3	34	1.73
141719--142041	57	5.5	59	74	10	207	34	26	4	34	1.76
141846--141936	29	3.2	29	71	20	91	35	29	5	29	1.80
142299--142491	96	2.0	97	80	8	216	31	16	13	38	1.87
143136--143174	18	2.2	18	86	9	53	64	2	0	33	1.08
148997--149050	28	2.0	27	85	3	72	48	3	3	44	1.38
155613--155762	78	1.9	78	98	0	291	25	19	22	33	1.97
165478--165516	20	2.0	20	89	0	60	15	10	2	71	1.23
166137--166199	28	2.2	29	81	16	78	33	7	1	57	1.37
168105--168129	13	1.9	13	100	0	50	0	12	0	88	0.53
173070--173098	2	14.5	2	100	0	58	48	0	51	0	1.00
173643--173677	15	2.3	15	90	0	52	28	2	2	65	1.21
177028--177462	30	14.9	29	70	17	208	31	4	31	33	1.77
177023--177756	117	6.2	116	80	8	751	31	3	31	33	1.75
177024--177759	59	12.4	58	78	9	587	31	3	31	33	1.75
177447--177526	42	1.9	42	97	0	151	31	2	31	35	1.71
177240--177710	246	1.9	246	85	4	646	32	2	30	34	1.73
177490--177765	30	9.5	28	69	17	136	31	2	30	35	1.72
179635--179715	17	4.8	17	81	0	81	54	2	0	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179617--179715	34	2.8	35	84	6	112	50	2	2	45	1.24
184536--184598	30	2.1	30	93	0	108	19	26	15	38	1.92

Tables:   1

The End!