Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012784.1 Kokia drynarioides strain JFW-HI SEQ_127796, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:425 original size:39 final size:39

Alignment explanation


    Indices: 296--438  Score: 144
    Period size: 39  Copynumber: 3.6  Consensus size: 39

        286 GAACATTTAT

                                     ***            
        296 AACTGGAAGTGACACTGTAAACACTGTGATAATATTACTG
          1 AACTGGAAGTGACACTGTAAACACTACAATAATA-TACTG

                                *          ** *     
        336 AACTGGCAA-TGACACTGTAGACACTACAATGCTGTACTG
          1 AACTGG-AAGTGACACTGTAAACACTACAATAATATACTG

               *  *                        *     * 
        375 AACCGGTAGTGACACTGTAAACACTACAATATTATACGG
          1 AACTGGAAGTGACACTGTAAACACTACAATAATATACTG

              *                *     
        414 AAATGGAAGTGACACTGTATACACT
          1 AACTGGAAGTGACACTGTAAACACT

        439 GAGATGTTAT


Statistics
Matches: 83,  Mismatches: 18, Indels: 5
        0.78            0.17        0.05

Matches are distributed among these distances:
  38    1  0.01
  39   56  0.67
  40   24  0.29
  41    2  0.02

ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24


Consensus pattern (39 bp):   
AACTGGAAGTGACACTGTAAACACTACAATAATATACTG
Done.