Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001279.1 Kokia drynarioides strain JFW-HI SEQ_112666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24


Found at i:960 original size:121 final size:121

Alignment explanation


    Indices: 746--987  Score: 457
    Period size: 121  Copynumber: 2.0  Consensus size: 121

        736 AAAGAGTAGG

                                                         *                   
        746 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAGGAATCTTGCGCAATCCAAC
          1 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC

                                                                    
        811 CGTGCACAAAGGGCTTGTGCGAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA
         66 CGTGCACAAAGGGCTTGTGCGAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA

                                                                             
        867 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC
          1 GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC

                                 *             *                    
        932 CGTGCACAAAGGGCTTGTGCGGAGATACGAGGGTCTGTTTCGAGTTATGAAGCGGA
         66 CGTGCACAAAGGGCTTGTGCGAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA

        988 TAAGTACGAT


Statistics
Matches: 118,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 121  118  1.00

ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25


Consensus pattern (121 bp):   
GACGTGAATTTCCAGGTTGGTGATCTAGTCCTTGCCAAATTGACAAGAATCTTGCGCAATCCAAC
CGTGCACAAAGGGCTTGTGCGAAGATACGAGGGTCCGTTTCGAGTTATGAAGCGGA
Done.