genome.fa.s12792.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012792.1 Kokia drynarioides strain JFW-HI SEQ_127805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125425

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339--383	19	2.4	18	81	3	54	68	2	6	22	1.24
2533--2605	37	2.0	37	91	2	121	30	19	13	36	1.90
9758--9804	21	2.2	21	88	0	67	17	40	17	25	1.90
16137--16191	14	4.2	13	80	11	58	34	1	0	63	1.05
16481--17521	519	2.0	521	95	0	1854	34	15	8	41	1.78
23913--23958	23	2.0	23	100	0	92	30	13	8	47	1.72
27815--27943	23	5.6	22	66	14	73	24	13	17	44	1.85
27776--27942	46	3.6	46	87	1	228	25	13	17	43	1.86
33539--33658	64	1.9	64	85	3	170	29	13	5	51	1.64
33877--33915	21	1.9	20	89	5	60	69	2	0	28	1.02
36394--36459	24	2.8	24	86	8	84	27	6	4	62	1.39
38364--38415	24	2.2	24	86	6	70	30	15	7	46	1.74
39945--40033	19	4.7	19	75	10	76	69	3	4	22	1.21
40437--40495	26	2.4	24	83	8	66	38	13	11	35	1.82
40455--40517	23	2.6	25	78	17	69	44	15	6	33	1.72
41305--41570	49	5.4	49	76	4	187	18	22	18	40	1.91
41345--41576	98	2.4	97	79	3	259	18	23	17	40	1.91
42767--42821	28	2.0	28	89	7	85	25	32	16	25	1.96
42795--42893	36	2.8	36	93	0	171	22	29	17	31	1.96
44938--45233	49	6.0	49	78	0	286	19	25	18	37	1.94
44944--45233	98	3.0	98	84	1	339	18	24	18	37	1.94
44938--45213	147	1.9	147	82	0	354	19	24	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46239--46298	23	2.6	22	76	7	66	1	20	0	78	0.84
46253--46296	16	2.7	17	86	13	58	2	22	0	75	0.92
46234--46314	17	4.6	17	70	22	60	1	19	1	77	0.90
46276--46314	16	2.3	18	86	8	55	0	17	0	82	0.68
46261--46314	24	2.2	24	80	0	63	0	20	0	79	0.73
50477--50507	16	1.9	16	93	0	53	38	9	12	38	1.77
52447--52850	30	13.6	29	75	9	305	37	23	1	36	1.67
62730--62754	12	2.1	12	100	0	50	60	8	0	32	1.26
64714--64961	50	5.0	50	70	5	169	27	18	16	37	1.92
64618--65010	100	3.9	99	77	1	354	28	19	16	36	1.93
69902--70005	40	2.6	41	83	4	131	33	29	14	22	1.93
82800--83022	81	2.8	80	77	7	218	26	18	23	30	1.98
85475--86616	382	3.0	382	88	2	1670	25	15	22	36	1.94
97625--97663	19	2.1	19	100	0	78	15	25	20	38	1.92
97895--97920	8	3.2	8	100	0	52	34	0	0	65	0.93
102790--102845	24	2.3	24	93	0	94	8	17	5	67	1.36
106024--109046	216	14.0	216	82	4	3230	29	17	14	39	1.88
106027--109046	649	4.7	646	81	4	3247	29	17	14	39	1.88
111797--111846	15	3.3	15	82	0	64	24	14	28	34	1.93
113409--117253	216	17.9	216	81	4	4076	28	16	14	39	1.88
113396--117253	431	9.0	430	81	4	4050	28	16	14	39	1.88
117793--117863	15	4.4	16	74	11	56	66	2	19	11	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120321--120396	30	2.5	30	100	0	152	28	27	7	35	1.85
124379--125425	216	4.8	216	81	7	1151	27	16	15	40	1.88

Tables:   1

The End!