Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012794.1 Kokia drynarioides strain JFW-HI SEQ_127807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2721
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1385 original size:6 final size:6

Alignment explanation


    Indices: 1375--1406  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       1365 AAAGAATAAT

                 *                               
       1375 TGTTGT TGTTGA TGTTGA TGTTGA TGTTGA TG
          1 TGTTGA TGTTGA TGTTGA TGTTGA TGTTGA TG

       1407 ATGCTATCCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.12, C:0.00, G:0.34, T:0.53


Consensus pattern (6 bp):   
TGTTGA

Done.