Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012795.1 Kokia drynarioides strain JFW-HI SEQ_127808, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2186
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29


Found at i:1461 original size:5 final size:5

Alignment explanation


    Indices: 1448--1487  Score: 53
    Period size: 5  Copynumber: 7.8  Consensus size: 5

       1438 AACCTCGCCC

                      *     *                              
       1448 TTAACT TTACT TTACT TTAAT TTAAT TTAAT TTAAT TTAA
          1 TTAA-T TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAA

       1488 GGCTATGTCA


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   5   29  0.91
   6    3  0.09

ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57


Consensus pattern (5 bp):   
TTAAT

Done.