Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000128.1 Kokia drynarioides strain JFW-HI SEQ_110774, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3517
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26


Found at i:2828 original size:27 final size:27

Alignment explanation


    Indices: 2793--2852  Score: 102
    Period size: 27  Copynumber: 2.2  Consensus size: 27

       2783 AATTTTCAAC

                                      * 
       2793 TAATGATTGTTTCCTTTGATCCTCTTTT
          1 TAAT-ATTGTTTCCTTTGATCCTCTTCT

                                       
       2821 TAATATTGTTTCCTTTGATCCTCTTCT
          1 TAATATTGTTTCCTTTGATCCTCTTCT

                 
       2848 TAATA
          1 TAATA

       2853 GAATTTTGGA


Statistics
Matches: 31,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  27   27  0.87
  28    4  0.13

ACGTcount: A:0.18, C:0.18, G:0.08, T:0.55


Consensus pattern (27 bp):   
TAATATTGTTTCCTTTGATCCTCTTCT
Done.