genome.fa.s12801.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012801.1 Kokia drynarioides strain JFW-HI SEQ_127814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191530

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70--136	35	2.0	33	83	11	84	49	2	5	41	1.42
5365--5394	14	2.1	15	93	6	53	40	0	0	60	0.97
5800--5842	17	2.5	17	82	17	54	39	0	0	60	0.97
6960--7040	30	2.6	31	81	9	87	30	8	12	48	1.71
16977--17014	13	2.7	14	80	12	51	63	2	5	28	1.30
18010--18058	17	2.7	17	81	12	53	32	2	0	65	1.04
18010--18058	21	2.6	19	82	17	59	32	2	0	65	1.04
18033--18065	17	2.0	17	88	5	50	27	0	3	69	1.03
18015--18054	21	2.0	20	90	5	62	35	2	0	62	1.09
18453--18493	21	2.0	21	86	9	59	68	0	0	31	0.90
25622--25688	36	1.9	35	90	6	109	31	10	26	31	1.90
25981--26017	2	18.5	2	100	0	74	48	51	0	0	1.00
26528--26553	12	2.2	12	100	0	52	34	0	7	57	1.27
33762--33824	23	2.9	22	78	4	74	55	3	0	41	1.16
34776--34811	19	2.0	17	89	10	54	72	2	0	25	0.98
40745--40778	17	2.0	17	94	0	59	58	20	14	5	1.57
45028--45086	22	2.6	22	76	10	57	45	1	3	49	1.28
45644--45673	15	2.0	15	93	0	51	56	0	0	43	0.99
48269--48322	28	1.9	28	92	7	92	31	9	7	51	1.61
49561--49630	26	2.7	26	93	2	115	41	20	28	10	1.84
49634--49800	23	7.2	22	81	11	174	40	22	25	11	1.88
49634--49800	46	3.6	45	81	11	194	40	22	25	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49634--49800	69	2.4	71	87	6	234	40	22	25	11	1.88
70188--70233	18	2.3	20	78	21	60	39	8	32	19	1.82
70193--70235	18	2.4	18	100	0	86	39	9	32	18	1.83
85593--85647	27	2.0	27	82	6	67	52	0	0	47	1.00
93521--93573	27	2.0	27	85	10	65	49	5	1	43	1.37
95855--95882	2	14.0	2	100	0	56	50	0	0	50	1.00
99793--99832	20	2.0	20	100	0	80	40	0	0	60	0.97
103103--103167	31	2.1	30	94	2	112	32	0	27	40	1.57
105510--105536	2	13.5	2	100	0	54	51	0	0	48	1.00
113094--113132	17	2.3	17	90	0	60	15	12	25	46	1.81
113312--113341	15	2.0	15	100	0	60	20	0	20	60	1.37
118552--118586	2	18.0	2	94	5	63	48	0	0	51	1.00
118702--118740	18	2.1	18	85	9	51	71	0	0	28	0.86
119167--119296	63	2.1	63	95	0	233	30	10	8	50	1.65
120696--120729	16	2.1	17	88	5	52	35	2	2	58	1.28
123361--123406	22	2.0	24	83	12	60	63	6	2	28	1.31
124370--124400	11	2.8	11	95	0	53	35	25	22	16	1.94
124523--124576	25	2.2	24	83	6	72	20	0	35	44	1.52
130405--130450	22	2.0	24	83	12	60	63	6	2	28	1.31
131530--131558	13	2.2	13	100	0	58	44	20	20	13	1.85
133307--133344	18	2.1	18	100	0	76	26	31	10	31	1.90
140539--140572	17	2.1	17	94	5	61	67	20	0	11	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140832--140937	52	2.0	52	100	0	212	31	26	16	26	1.96
141461--141529	24	2.9	24	86	0	93	53	7	11	27	1.63
144874--145295	226	1.9	226	94	0	754	24	15	15	43	1.86
160558--160610	23	2.6	19	77	16	52	43	3	3	49	1.38
167442--167480	16	2.5	15	80	8	51	35	0	0	64	0.94
167574--167619	18	2.6	18	80	13	51	47	4	2	45	1.34
168175--168233	30	2.0	29	93	3	100	45	5	0	49	1.24
168336--168360	13	1.9	13	100	0	50	64	16	0	20	1.30
168669--168719	20	2.5	21	76	23	56	45	3	0	50	1.20
169965--169995	16	2.0	16	93	6	55	64	0	0	35	0.94
171627--171671	13	3.3	13	90	6	63	2	8	2	86	0.73
171627--171661	18	2.0	17	94	5	61	0	8	0	91	0.42
172186--172278	48	1.9	48	97	0	177	26	21	12	38	1.90
183186--183243	30	1.9	31	86	10	84	39	17	10	32	1.83
187693--187777	43	1.9	44	88	4	127	37	5	20	36	1.77

Tables:   1

The End!