Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012808.1 Kokia drynarioides strain JFW-HI SEQ_127821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 117875
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Warning! 155 characters in sequence are not A, C, G, or T
Found at i:925 original size:21 final size:20
Alignment explanation
Indices: 901--948 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
891 TAAGGCTTCC
*
901 CTTCTCTTTTTCTCCTCTTTT
1 CTTCTCTTTTTCTCC-CATTT
*
922 CTTCTC-TTTTCTTCCATTT
1 CTTCTCTTTTTCTCCCATTT
941 CTTCTCTT
1 CTTCTCTT
949 CTCTCCCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 8 0.33
21 6 0.25
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (20 bp):
CTTCTCTTTTTCTCCCATTT
Found at i:934 original size:10 final size:10
Alignment explanation
Indices: 901--948 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
891 TAAGGCTTCC
901 CTTCTCTTTTT
1 CTTCTC-TTTT
*
912 CTCCTCTTTT
1 CTTCTCTTTT
922 CTTCTCTTTT
1 CTTCTCTTTT
*
932 CTTC-CATTT
1 CTTCTCTTTT
941 CTTCTCTT
1 CTTCTCTT
949 CTCTCCCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 8 0.25
10 19 0.59
11 5 0.16
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (10 bp):
CTTCTCTTTT
Found at i:22405 original size:28 final size:28
Alignment explanation
Indices: 22359--22419 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
22349 TGTATTCGAC
* * *
22359 AAGTTTCGTTCGTATCATGTTGACGTAA
1 AAGTTTCGTTCATACCATGTTGACGCAA
* *
22387 AAGTTTTGTTCATACCATGTTGATGCAA
1 AAGTTTCGTTCATACCATGTTGACGCAA
22415 AAGTT
1 AAGTT
22420 ATAGTATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (28 bp):
AAGTTTCGTTCATACCATGTTGACGCAA
Found at i:26155 original size:17 final size:17
Alignment explanation
Indices: 26119--26157 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26109 ATTGTCATCA
*
26119 CATTTTAATTGTCCATG
1 CATTTTAATTGTCCACG
* *
26136 CATTTTATTTGTCGACG
1 CATTTTAATTGTCCACG
26153 CATTT
1 CATTT
26158 GCATTGGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.49
Consensus pattern (17 bp):
CATTTTAATTGTCCACG
Found at i:28973 original size:30 final size:30
Alignment explanation
Indices: 28920--28976 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
28910 ACACTGATAT
*
28920 TACGAACACTTGTGTTGCAAGCACTCATGC
1 TACGAACACTTGTGCTGCAAGCACTCATGC
*
28950 TACGAACAC-TGATGCTGCTAGCACTCA
1 TACGAACACTTG-TGCTGCAAGCACTCA
28977 CATTGCAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (30 bp):
TACGAACACTTGTGCTGCAAGCACTCATGC
Found at i:28979 original size:75 final size:75
Alignment explanation
Indices: 28864--29010 Score: 231
Period size: 75 Copynumber: 2.0 Consensus size: 75
28854 TGGTGTTGTG
* * * *
28864 AGCAGTCATGCTACGAACACTAATGGTGCTAGCACTCACATTGCAAACACTGATATTACGAACAC
1 AGCACTCATGCTACGAACACTAATGCTGCTAGCACTCACATTGCAAACACTAATATTACAAACAC
28929 TTGTGTTGCA
66 TTGTGTTGCA
* * *
28939 AGCACTCATGCTACGAACACTGATGCTGCTAGCACTCACATTGCAAACATTAATATTGCAAACAC
1 AGCACTCATGCTACGAACACTAATGCTGCTAGCACTCACATTGCAAACACTAATATTACAAACAC
29004 TTGTGTT
66 TTGTGTT
29011 ACGAGCATGG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (75 bp):
AGCACTCATGCTACGAACACTAATGCTGCTAGCACTCACATTGCAAACACTAATATTACAAACAC
TTGTGTTGCA
Found at i:38444 original size:17 final size:18
Alignment explanation
Indices: 38422--38461 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
38412 GAAGAAAAGG
38422 AAAGAAAAGAA-GAAGAA
1 AAAGAAAAGAAGGAAGAA
*
38439 AAAGAAGAGAAGGAAGAA
1 AAAGAAAAGAAGGAAGAA
38457 AAAGA
1 AAAGA
38462 TGTTACGCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAAGAAAAGAAGGAAGAA
Found at i:38454 original size:21 final size:21
Alignment explanation
Indices: 38411--38461 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 21
38401 GTATTGAGGC
*
38411 AGAAGAAAAGGAAAGAAAAGA
1 AGAAGAAAAAGAAAGAAAAGA
*
38432 AGAAGAAAAAG-AAGAGAAG-
1 AGAAGAAAAAGAAAGAAAAGA
38451 -GAAGAAAAAGA
1 AGAAGAAAAAGA
38462 TGTTACGCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 10 0.37
20 7 0.26
21 10 0.37
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (21 bp):
AGAAGAAAAAGAAAGAAAAGA
Found at i:38886 original size:17 final size:17
Alignment explanation
Indices: 38846--38888 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
38836 GTTAGTTGCA
38846 TACATTTTTTATTGTCAT
1 TACA-TTTTTATTGTCAT
*
38864 TGCATTTTTATTGTC-T
1 TACATTTTTATTGTCAT
38880 CTACATTTT
1 -TACATTTT
38889 ATTTGTTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 1 0.05
17 18 0.82
18 3 0.14
ACGTcount: A:0.19, C:0.14, G:0.07, T:0.60
Consensus pattern (17 bp):
TACATTTTTATTGTCAT
Found at i:39873 original size:24 final size:24
Alignment explanation
Indices: 39813--39866 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
39803 GAAATGACAC
39813 TTAATTTCTCCTTAAATTAGTGTA
1 TTAATTTCTCCTTAAATTAGTGTA
39837 TTAATTTCTCCTTAAATTAGTGTA
1 TTAATTTCTCCTTAAATTAGTGTA
39861 -TAATTT
1 TTAATTT
39867 GTTCCTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 6 0.20
24 24 0.80
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (24 bp):
TTAATTTCTCCTTAAATTAGTGTA
Found at i:41130 original size:24 final size:23
Alignment explanation
Indices: 41093--41146 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
41083 TTAATTCATC
*
41093 TTTTATTAATTTGCTCTAAC-AT
1 TTTTATTAATTTGCACTAACAAT
41115 TTTATATTACATTTGCACTAACAAT
1 TTT-TATTA-ATTTGCACTAACAAT
41140 TTTTATT
1 TTTTATT
41147 CTTAACCTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 3 0.11
23 5 0.18
24 15 0.54
25 5 0.18
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTATTAATTTGCACTAACAAT
Found at i:42822 original size:11 final size:11
Alignment explanation
Indices: 42806--42832 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
42796 TGTAATCAAG
42806 TATTTTCATAA
1 TATTTTCATAA
42817 TATTTTCATAA
1 TATTTTCATAA
42828 TATTT
1 TATTT
42833 AGTAAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (11 bp):
TATTTTCATAA
Found at i:49358 original size:21 final size:22
Alignment explanation
Indices: 49332--49373 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
49322 ATAAAAAAGA
49332 AAAAGAAAAATGAGT-AGAAAC
1 AAAAGAAAAATGAGTAAGAAAC
**
49353 AAAAGAAGTATGAGTAAGAAA
1 AAAAGAAAAATGAGTAAGAAA
49374 ACATGTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.64, C:0.02, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAATGAGTAAGAAAC
Found at i:52908 original size:16 final size:17
Alignment explanation
Indices: 52887--52918 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
52877 GAGAGAAAAG
52887 AGCAAAACAAA-AGCAA
1 AGCAAAACAAATAGCAA
52903 AGCAAAACAAATAGCA
1 AGCAAAACAAATAGCA
52919 TGAGGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.66, C:0.19, G:0.12, T:0.03
Consensus pattern (17 bp):
AGCAAAACAAATAGCAA
Found at i:55720 original size:15 final size:15
Alignment explanation
Indices: 55670--55720 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
55660 GGACCTTGCG
*
55670 AGCACTAGTGTTACG
1 AGCACTAGTGTTACA
*
55685 AGCACTCA-TGCTACA
1 AGCACT-AGTGTTACA
* *
55700 AACACTAGTGTTGCA
1 AGCACTAGTGTTACA
55715 AGCACT
1 AGCACT
55721 CATGCTGTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 1 0.04
15 26 0.93
16 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (15 bp):
AGCACTAGTGTTACA
Found at i:75907 original size:19 final size:19
Alignment explanation
Indices: 75883--75924 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
75873 AATTCCCCTA
75883 AAATTCCCCTCGATCTTAC
1 AAATTCCCCTCGATCTTAC
75902 AAATTCCCCTCGATCTTAC
1 AAATTCCCCTCGATCTTAC
75921 AAAT
1 AAAT
75925 GATGAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.05, T:0.31
Consensus pattern (19 bp):
AAATTCCCCTCGATCTTAC
Found at i:77537 original size:21 final size:21
Alignment explanation
Indices: 77511--77560 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
77501 CGATGCAGAT
77511 TTCTACCGGTACTTGTACTAG
1 TTCTACCGGTACTTGTACTAG
77532 TTCTACCGGTACTTGTACTAG
1 TTCTACCGGTACTTGTACTAG
77553 TTCTACCG
1 TTCTACCG
77561 ATACAAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (21 bp):
TTCTACCGGTACTTGTACTAG
Found at i:78388 original size:52 final size:52
Alignment explanation
Indices: 78302--78591 Score: 323
Period size: 52 Copynumber: 5.6 Consensus size: 52
78292 ATTTCACTTC
* * * * * * *
78302 ATTCATATACTCATGATGACACAAAGCCACCGGACC-TTATAATTCGCAAGGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTT-TAATCCGTAAAGG
* *
78354 ATTCATATACTCACGATGACACAGAGTCATCGGACC-TCTTAATCCATAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGT-TTAATCCGTAAAGG
** * * * *
78406 ACCCTTATACTCACGATGACACTTAGTCATTGAACCGTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
* * ** * *
78458 ATTTATATACTCATGATGACAGTTAGTCATTGGACCATTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
* *
78510 ATTCATATACTCATGATGACACATAGCCATCGGACCGTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
* *
78562 ATTCATATACTCACGATGACTCATAATCAT
1 ATTCATATACTCACGATGACACATAGTCAT
78592 TGAACCTCTT
Statistics
Matches: 202, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
52 200 0.99
53 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
Found at i:78592 original size:104 final size:104
Alignment explanation
Indices: 78302--78601 Score: 361
Period size: 104 Copynumber: 2.9 Consensus size: 104
78292 ATTTCACTTC
* * * * *
78302 ATTCATATACTCATGATGACACAAAGCCACCGGACC-TTATAATTCGCAAGGGATTCATATACTC
1 ATTCATATACTCATGATGACACATAGCCATCGGACCGTT-TAATCCGTAAAGGATTCATATACTC
* *
78366 ACGATGACACAGAGTCATCGGACCTCTTAATCCATAAAGG
65 ACGATGACACATAGTCATTGGACCTCTTAATCCATAAAGG
** * * * * * * *
78406 ACCCTTATACTCACGATGACACTTAGTCATTGAACCGTTTAATCCGTAAAGGATTTATATACTCA
1 ATTCATATACTCATGATGACACATAGCCATCGGACCGTTTAATCCGTAAAGGATTCATATACTCA
* ** *
78471 TGATGACAGTTAGTCATTGGACCAT-TTAATCCGTAAAGG
66 CGATGACACATAGTCATTGGACC-TCTTAATCCATAAAGG
78510 ATTCATATACTCATGATGACACATAGCCATCGGACCGTTTAATCCGTAAAGGATTCATATACTCA
1 ATTCATATACTCATGATGACACATAGCCATCGGACCGTTTAATCCGTAAAGGATTCATATACTCA
* * *
78575 CGATGACTCATAATCATTGAACCTCTT
66 CGATGACACATAGTCATTGGACCTCTT
78602 CGTTCATGGC
Statistics
Matches: 158, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
103 1 0.01
104 154 0.97
105 3 0.02
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (104 bp):
ATTCATATACTCATGATGACACATAGCCATCGGACCGTTTAATCCGTAAAGGATTCATATACTCA
CGATGACACATAGTCATTGGACCTCTTAATCCATAAAGG
Found at i:84930 original size:21 final size:21
Alignment explanation
Indices: 84878--84931 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
84868 TCTGTACTAG
*
84878 TTCTACTAATACAAGTATAAT
1 TTCTACTGATACAAGTATAAT
*
84899 TTCTA-TCGATACAGGTATAAT
1 TTCTACT-GATACAAGTATAAT
84920 TTCTACTGATAC
1 TTCTACTGATAC
84932 TAAAAACTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 27 0.93
22 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (21 bp):
TTCTACTGATACAAGTATAAT
Found at i:85789 original size:52 final size:52
Alignment explanation
Indices: 85626--85920 Score: 319
Period size: 52 Copynumber: 5.7 Consensus size: 52
85616 ATTTCAGTTC
* * * * * *
85626 ATTCATATACTCACGATGACAGATAGCCACCGGACC-TTATAATCAGCAAGGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTT-TAATCCGTAAAGG
* *
85678 ATTCATATACTCACGATGACACAGAGTC-TCAGACC-TCTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGT-TTAATCCGTAAAGG
** *
85729 ACCCATATACTCACGATGACACTTAGTCATCGGACCGTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
* * * * *
85781 ATTTATATACTCACGATGATACTTTGTCATCTGG-CCGTTTAATCCATAAAGG
1 ATTCATATACTCACGATGACACATAGTCATC-GGACCGTTTAATCCGTAAAGG
** * * *
85833 ATTCATATACTCTTGATGACACATAGCCATCGGATCGTTTAATCCGTAACGG
1 ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
* * *
85885 ATTCATATACTCACGATGACTCGTAATCATCGGACC
1 ATTCATATACTCACGATGACACATAGTCATCGGACC
85921 TCTTCATTTA
Statistics
Matches: 202, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
51 42 0.21
52 157 0.78
53 3 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (52 bp):
ATTCATATACTCACGATGACACATAGTCATCGGACCGTTTAATCCGTAAAGG
Found at i:91272 original size:8 final size:8
Alignment explanation
Indices: 91259--91283 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91249 TACACAGAGA
91259 AATTAGGG
1 AATTAGGG
91267 AATTAGGG
1 AATTAGGG
91275 AATTAGGG
1 AATTAGGG
91283 A
1 A
91284 GTGGACGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.36, T:0.24
Consensus pattern (8 bp):
AATTAGGG
Found at i:95772 original size:47 final size:47
Alignment explanation
Indices: 95718--95812 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
95708 TTGTGTGGTG
95718 AGTGTTATTAAAGGGCGATTTGGTAAACTAACCCTTATTTATGCTTA
1 AGTGTTATTAAAGGGCGATTTGGTAAACTAACCCTTATTTATGCTTA
95765 AGTGTTATTAAAGGGCGATTTGGTAAACTAACCCTTATTTATGCTTA
1 AGTGTTATTAAAGGGCGATTTGGTAAACTAACCCTTATTTATGCTTA
95812 A
1 A
95813 TTAGATAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.38
Consensus pattern (47 bp):
AGTGTTATTAAAGGGCGATTTGGTAAACTAACCCTTATTTATGCTTA
Found at i:110626 original size:14 final size:14
Alignment explanation
Indices: 110598--110672 Score: 98
Period size: 14 Copynumber: 5.4 Consensus size: 14
110588 AAAAGAAAAG
110598 AAAAGAAAAAA-GA
1 AAAAGAAAAAAGGA
110611 AAAAGAAAAAAGGA
1 AAAAGAAAAAAGGA
*
110625 AAAAGAAAAAAGAA
1 AAAAGAAAAAAGGA
* **
110639 AAAAAAAGAAAAAAA
1 AAAAGAA-AAAAGGA
110654 AAAAGAAAAAAGGA
1 AAAAGAAAAAAGGA
110668 AAAAG
1 AAAAG
110673 GATTTTTTAC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.20
14 31 0.57
15 12 0.22
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAAGGA
Found at i:110629 original size:37 final size:36
Alignment explanation
Indices: 110575--110672 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 36
110565 ATTATTTCAC
*
110575 AAAAAAAAAA-GAGAAAAGAAAAGAA-AAGAAAAAAGA
1 AAAAAAAAAAGGA-AAAAGAAAA-AAGAAAAAAAAAGA
110611 AAAAGAAAAAAGGAAAAAGAAAAAAGAAAAAAAAAGA
1 AAAA-AAAAAAGGAAAAAGAAAAAAGAAAAAAAAAGA
* *
110648 AAAAAAAAAAGAAAAAAGGAAAAAG
1 AAAAAAAAAAGGAAAAAGAAAAAAG
110673 GATTTTTTAC
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
36 25 0.45
37 29 0.52
38 2 0.04
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (36 bp):
AAAAAAAAAAGGAAAAAGAAAAAAGAAAAAAAAAGA
Found at i:110665 original size:43 final size:44
Alignment explanation
Indices: 110580--110672 Score: 161
Period size: 44 Copynumber: 2.1 Consensus size: 44
110570 TTCACAAAAA
* *
110580 AAAAAGAGAAAAGAAAAGAAAAGAAAAAAGAAAAAGAAAAAAGG
1 AAAAAGAAAAAAGAAAAAAAAAGAAAAAAGAAAAAGAAAAAAGG
110624 AAAAAGAAAAAAGAAAAAAAAAGAAAAAA-AAAAAGAAAAAAGG
1 AAAAAGAAAAAAGAAAAAAAAAGAAAAAAGAAAAAGAAAAAAGG
110667 AAAAAG
1 AAAAAG
110673 GATTTTTTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
43 20 0.43
44 27 0.57
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (44 bp):
AAAAAGAAAAAAGAAAAAAAAAGAAAAAAGAAAAAGAAAAAAGG
Found at i:110671 original size:1 final size:1
Alignment explanation
Indices: 110575--110664 Score: 63
Period size: 1 Copynumber: 90.0 Consensus size: 1
110565 ATTATTTCAC
* * * * * * * ** * *
110575 AAAAAAAAAAGAGAAAAGAAAAGAAAAGAAAAAAGAAAAAGAAAAAAGGAAAAAGAAAAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
110640 AAAAAAGAAAAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
110665 GGAAAAAGGA
Statistics
Matches: 65, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (1 bp):
A
Found at i:110674 original size:7 final size:6
Alignment explanation
Indices: 110575--110663 Score: 89
Period size: 6 Copynumber: 14.8 Consensus size: 6
110565 ATTATTTCAC
110575 AAAAA- AAAAAG AGAAAAG -AAAAG -AAAAG AAAAAAG AAAAAG AAAAAAGG
1 AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG -AAAAAG AAAAAG -AAAAA-G
*
110624 AAAAAG AAAAA- AGAAAA- AAAAAG AAAAAA AAAAAG AAAAA
1 AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAAG AAAAA
110664 AGGAAAAAGG
Statistics
Matches: 74, Mismatches: 2, Indels: 15
0.81 0.02 0.16
Matches are distributed among these distances:
5 20 0.27
6 33 0.45
7 20 0.27
8 1 0.01
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:111607 original size:99 final size:99
Alignment explanation
Indices: 111496--111925 Score: 345
Period size: 99 Copynumber: 4.3 Consensus size: 99
111486 AATGGATCTA
* * * * *
111496 GTACCATAAAGATATAAAGGGAAAGGTTGAGGCGGCAACGATGAACTCGGTACATTAGAAGATGT
1 GTACCATGAAGATATAAAGGGAAAGGTTGAGGCGGCAACGACGAACCCAGTACATTAAAAGATGT
* *
111561 GATGGGAAAGATTAAGGCTGCAATAGCAAATATG
66 GATGGGAAGGATTAAGGCTGCAACAGCAAATATG
* * * * * * * *
111595 GTACAATGAAGATATGAAGGGAAAGGTTAACGCTGCAACGACGAACCCGGTACCTTAAAATATGT
1 GTACCATGAAGATATAAAGGGAAAGGTTGAGGCGGCAACGACGAACCCAGTACATTAAAAGATGT
* * * * ** *
111660 GCTAGGAAGGATTGAGGTTGCTGCAGCAAATTTG
66 GATGGGAAGGATTAAGGCTGCAACAGCAAATATG
* * * * * *
111694 ATACCATGAAGATATGAAA-GGAAAGGTTGAGGTC-GTAATGGCGAACCCAGTACCTTAGAAGAT
1 GTACCATGAAGATAT-AAAGGGAAAGGTTGAGG-CGGCAACGACGAACCCAGTACATTAAAAGAT
* * ** *
111757 GTAATGGGAAGGATTAA-GCTCGCAACGGTGAATCTG
64 GTGATGGGAAGGATTAAGGCT-GCAACAGCAAATATG
* * * * *
111793 GTACCATTAAGATGTGAAGGGAAAGGTTGAGG-GCACAACGACGAACCAAGTACCA-TAAAAGAT
1 GTACCATGAAGATATAAAGGGAAAGGTTGAGGCG-GCAACGACGAACCCAGTA-CATTAAAAGAT
* * * *
111856 GTGATGGGAAGGATTGAGGCTAG-AAC-GACGAATCTA
64 GTGATGGGAAGGATTAAGGCT-GCAACAG-CAAATATG
111892 GTACCATGGAA-ATATAAAGGGGAAAGGTTGAGGC
1 GTACCAT-GAAGATATAAA-GGGAAAGGTTGAGGC
111926 TATAATGGCG
Statistics
Matches: 258, Mismatches: 61, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
98 5 0.02
99 229 0.89
100 24 0.09
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (99 bp):
GTACCATGAAGATATAAAGGGAAAGGTTGAGGCGGCAACGACGAACCCAGTACATTAAAAGATGT
GATGGGAAGGATTAAGGCTGCAACAGCAAATATG
Found at i:111647 original size:49 final size:50
Alignment explanation
Indices: 111496--111647 Score: 130
Period size: 49 Copynumber: 3.1 Consensus size: 50
111486 AATGGATCTA
* * * * * *
111496 GTACCATA-AAGATATAAAGGGAAAGGTTGAGGCGGCAACGATGAACTCG
1 GTACAATAGAAGATATGAAGGGAAAGGTTAAGGCTGCAACGACGAACACG
* * * * * * * *
111545 GTACATTAGAAGATGTGATGGGAAAGATTAAGGCTGCAA-TAGCAAATATG
1 GTACAATAGAAGATATGAAGGGAAAGGTTAAGGCTGCAACGA-CGAACACG
* *
111595 GTACAAT-GAAGATATGAAGGGAAAGGTTAACGCTGCAACGACGAACCCG
1 GTACAATAGAAGATATGAAGGGAAAGGTTAAGGCTGCAACGACGAACACG
111644 GTAC
1 GTAC
111648 CTTAAAATAT
Statistics
Matches: 76, Mismatches: 24, Indels: 6
0.72 0.23 0.06
Matches are distributed among these distances:
49 42 0.55
50 34 0.45
ACGTcount: A:0.39, C:0.14, G:0.29, T:0.18
Consensus pattern (50 bp):
GTACAATAGAAGATATGAAGGGAAAGGTTAAGGCTGCAACGACGAACACG
Found at i:111865 original size:50 final size:49
Alignment explanation
Indices: 111793--111898 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 49
111783 GGTGAATCTG
*
111793 GTACCATTAAGATGTGAAGGGAAAGG-TTGAGGGC-ACAACGACGAACCAA
1 GTACCATAAAGATGTGAAGGG-AAGGATTGA-GGCTACAACGACGAACCAA
* * * *
111842 GTACCATAAAAGATGTGATGGGAAGGATTGAGGCTAGAACGACGAATCTA
1 GTACCAT-AAAGATGTGAAGGGAAGGATTGAGGCTACAACGACGAACCAA
111892 GTACCAT
1 GTACCAT
111899 GGAAATATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
49 14 0.29
50 35 0.71
ACGTcount: A:0.38, C:0.15, G:0.29, T:0.18
Consensus pattern (49 bp):
GTACCATAAAGATGTGAAGGGAAGGATTGAGGCTACAACGACGAACCAA
Found at i:111899 original size:198 final size:198
Alignment explanation
Indices: 111491--111939 Score: 457
Period size: 198 Copynumber: 2.3 Consensus size: 198
111481 GTAACAATGG
* * * ** * *
111491 ATCTAGTACCATAAAGATATAAAGGGAAAGGTTGAGGCGGCAACGATGAACTCGGTACATTAGAA
1 ATCTAGTACCATGAAGATATAAAGGGAAAGGTTGAGGCGGTAATGGCGAACCCAGTACATTAGAA
* *
111556 GATGTGATGGGAAAGATTAAGGCTGCAATAGCAAATATGGTACAATGAAGATATGAAGGGAAAGG
66 GATGTAATGGGAAAGATTAAGGCTGCAACAGCAAATATGGTACAATGAAGATATGAAGGGAAAGG
* ** * * * *
111621 TTAACGCTGCAACGACGAACCCGGTACCTTAAAATATGTGCTAGGAAGGATTGAGGTTGCTGCAG
131 TTAACGCTACAACGACGAACCAAGTACCATAAAAGATGTGATAGGAAGGATTGAGGTAGCTGCAG
111686 CAA
196 CAA
* *
111689 AT-TTGATACCATGAAGATATGAAA-GGAAAGGTTGAGGTC-GTAATGGCGAACCCAGTACCTTA
1 ATCTAG-TACCATGAAGATAT-AAAGGGAAAGGTTGAGG-CGGTAATGGCGAACCCAGTACATTA
* * ** * * * *
111751 GAAGATGTAATGGGAAGGATTAA-GCTCGCAACGGTGAATCTGGTACCATTAAGATGTGAAGGGA
63 GAAGATGTAATGGGAAAGATTAAGGCT-GCAACAGCAAATATGGTACAATGAAGATATGAAGGGA
** *
111815 AAGGTTGAGGGC-ACAACGACGAACCAAGTACCATAAAAGATGTGATGGGAAGGATTGAGGCTAG
127 AAGGTT-AACGCTACAACGACGAACCAAGTACCATAAAAGATGTGATAGGAAGGATTGAGG-TAG
*
111879 AAC-G-A-CGA
190 --CTGCAGCAA
**
111887 ATCTAGTACCATGGAA-ATATAAAGGGGAAAGGTTGAGGCTATAATGGCGAACC
1 ATCTAGTACCAT-GAAGATATAAA-GGGAAAGGTTGAGGCGGTAATGGCGAACC
111940 TTGTACCATA
Statistics
Matches: 206, Mismatches: 32, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
197 8 0.04
198 156 0.76
199 40 0.19
200 1 0.00
201 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (198 bp):
ATCTAGTACCATGAAGATATAAAGGGAAAGGTTGAGGCGGTAATGGCGAACCCAGTACATTAGAA
GATGTAATGGGAAAGATTAAGGCTGCAACAGCAAATATGGTACAATGAAGATATGAAGGGAAAGG
TTAACGCTACAACGACGAACCAAGTACCATAAAAGATGTGATAGGAAGGATTGAGGTAGCTGCAG
CAA
Found at i:111915 original size:50 final size:50
Alignment explanation
Indices: 111829--111975 Score: 129
Period size: 50 Copynumber: 2.9 Consensus size: 50
111819 TTGAGGGCAC
* * ** *
111829 AACGACGAACCAAGTACCATA-AAAGATGTGATGGGAAGGATTGAGGCTAG
1 AACGACGAACCTAGTACCATAGAAATAAAT-AGGGGAAGGATTGAGGCTAG
* * *
111879 AACGACGAATCTAGTACCATGGAAATATAA-AGGGGAAAGG-TTGAGGCTAT
1 AACGACGAACCTAGTACCATAGAAATA-AATAGGGG-AAGGATTGAGGCTAG
* * * * *
111929 AATGGCGAACCTTGTACCATAGAAATAAATATGGGAAAGATTGAGGC
1 AACGACGAACCTAGTACCATAGAAATAAATAGGGGAAGGATTGAGGC
111976 CACGATGGAA
Statistics
Matches: 77, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
49 5 0.06
50 64 0.83
51 8 0.10
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (50 bp):
AACGACGAACCTAGTACCATAGAAATAAATAGGGGAAGGATTGAGGCTAG
Found at i:112399 original size:78 final size:77
Alignment explanation
Indices: 112258--113397 Score: 1221
Period size: 78 Copynumber: 14.7 Consensus size: 77
112248 AAGCTACATA
* ** * * *
112258 CCAATCTCTTACCCCGATCATGA-GGCAGATTGAAG-TA-TCCAATCTGTTACCTCGATCATGGG
1 CCAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACACACCAATCTCTTACC-CGATCATGGG
* *
112320 GTAAATTGAAGCAT
64 GCAGATTGAAGCAT
* *
112334 CCAATCTTCTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCTCGAGCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACC-CGATCATGGGG
*
112399 TAGATTGAAGCAT
65 CAGATTGAAGCAT
* * * * * *
112412 TCGATCTTTTACCCTAACCAGATGGCAAATT--TG--------ATCTCTTAGCCCGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTA-CCCGATCATGGGG
112467 CAGATTGAAGCAT
65 CAGATTGAAGCAT
* * *
112480 CCAGTCTTTTACCCTAATTAGAGGGTAGATTGAAGACACACCAATCTCTTACCCAGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCC-GATCATGGGG
112545 CAGATTGAAGCAT
65 CAGATTGAAGCAT
* * * * *
112558 CCAATCTTTTACCCTAATTAGACGGCAGATTAAAGATACACCAATCTCTTACCCTGATCATGCGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCC-GATCATGGGG
*
112623 TAGATTGAAGCAT
65 CAGATTGAAGCAT
* * * * *
112636 CCAATCTTTTACCCTAATTAGAGAGCAGATCGAAGACACACCAATCACTTACCCTAATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCC-GATCATGGGG
*
112701 CAGATTGAAGTAT
65 CAGATTGAAGCAT
112714 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACTCCGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTAC-CCGATCATGGGG
*
112779 TAGATTGAAGCAT
65 CAGATTGAAGCAT
* * *
112792 CCAATC-TTTACCCTAATCAGAAGGCAGATTGAAGACATCATCTAATCTCTTGCCTCGATCATGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACA-CA-CCAATCTCTTACC-CGATCATGG
* *
112856 GGAAGATTAAAGCAT
63 GGCAGATTGAAGCAT
* * * * *
112871 CCAATGTTTTACCCTAATCAGAGGGTAGATTAAAGACACATCAATCTCTTACCCTAATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCC-GATCATGGGG
*
112936 CAGATTAAAGCAT
65 CAGATTGAAGCAT
* * ** * *
112949 CCGATCTTTTACCCTAATCAGATGATAGATTAAAGACATCATCCAATCTCTTACCCTGATCATGC
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACA-CA-CCAATCTCTTACCC-GATCATGG
113014 GGCAGATTGAAGCAT
63 GGCAGATTGAAGCAT
* * * *
113029 CCAGTCTTTTACCTTAATTAGAGGGCAAATTGAAGACACACCAATCTCTTAACCCGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTT-ACCCGATCATGGGG
*
113094 CAGATTAAAGCAT
65 CAGATTGAAGCAT
* * *
113107 CCAATCTTTTACCCTAATCAGAAGGCAGATTGAAGACAAACAAATCTCTTACCCCGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTA-CCCGATCATGGGG
*
113172 CAAATTGAAGCAT
65 CAGATTGAAGCAT
* * * * * * * * * * * *
113185 CTAATCTTCTACCCTAATTAAACGGTAGATTGAAAACATAACAATCTCTTACCCCTACCTTGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTA-CCCGATCATGGGG
*
113250 CAGATTAAAGCAT
65 CAGATTGAAGCAT
* * *
113263 CAAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCGATCTTTTACCCCGATCATGGGG
1 CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTA-CCCGATCATGGGG
* *
113328 CAGGTTGAATTCAT
65 CAGATTGAA-GCAT
* * ** * *
113342 CTAATCTCTTACCCTGGTCATG-GGGTAGATTGAAGACATCATCTAATCTCTTACCC
1 CCAATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACA-CA-CCAATCTCTTACCC
113398 CAATCTTGAG
Statistics
Matches: 901, Mismatches: 134, Indels: 54
0.83 0.12 0.05
Matches are distributed among these distances:
68 53 0.06
69 2 0.00
70 1 0.00
75 2 0.00
76 29 0.03
77 36 0.04
78 590 0.65
79 83 0.09
80 97 0.11
81 8 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (77 bp):
CCAATCTTTTACCCTAATCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCGATCATGGGGC
AGATTGAAGCAT
Found at i:113365 original size:39 final size:42
Alignment explanation
Indices: 112445--113418 Score: 329
Period size: 38 Copynumber: 24.8 Consensus size: 42
112435 GGCAAATTTG
*
112445 ATCTCTTAGCCCGATCATGGGGCAGATTGAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * ** * * *
112483 GTCTTTTACCCTAATTA-GAGGGTAGATTGAAGACA-CA-CCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
*
112523 ATCTCTTACCCAGATCATGGGGCAGATTGAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** * * * * *
112561 ATCTTTTACCCTAATTA-GACGGCAGATTAAAGATA-CA-CCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* * *
112601 ATCTCTTACCCTGATCATGCGGTAGATTGAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** * * * *
112639 ATCTTTTACCCTAATTA-GAGAGCAGATCGAAGACA-CA-CCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* ** *
112679 ATCACTTACCCTAATCATGGGGCAGATTGAAG---T-ATCCA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** *
112717 ATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACA-CA-CCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* *
112757 ATCTCTTACTCCGATCATGGGGTAGATTGAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
** *
112795 ATCT-TTACCCTAATCA-GAAGGCAGATTGAAGACATCATCTA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* * * *
112836 ATCTCTTGCCTCGATCATGGGGAAGATTAAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * ** * *
112874 ATGTTTTACCCTAATCA-GAGGGTAGATTAAAGACA-CATC-A
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
** * *
112914 ATCTCTTACCCTAATCATGGGGCAGATTAAAG-CATC--C-G
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** * ** * *
112952 ATCTTTTACCCTAATCA-GATGATAGATTAAAGACATCATCCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* *
112994 ATCTCTTACCCTGATCATGCGGCAGATTGAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * *** * * *
113032 GTCTTTTACCTTAATTA-GAGGGCAAATTGAAGACA-CA-CCA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* *
113072 ATCTCTTAACCCGATCATGGGGCAGATTAAAG-CATC--C-A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** * * *
113110 ATCTTTTACCCTAATCA-GAAGGCAGATTGAAGACA--AACAA
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
*
113150 ATCTCTTACCCCGATCATGGGGCAAATTGAAG----CATCTA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
** * *** * * *
113188 ATCT-TCTACCCTAATTAAACGGTAGATTGAAAACAT-AAC-A
1 ATCTCT-TACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * * *
113228 ATCTCTTACCCCTACCTTGGGGCAGATTAAAG-CATCA---A
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* ** **
113266 ATCTTTTACCCTAATCA-GAGGGCAGATTGAAGACA-CA-CCG
1 ATCTCTTACCCCGATCATG-GGGCAGATTGAAGACATCATCTA
* * *
113306 ATCTTTTACCCCGATCATGGGGCAGGTTG-A-A-TTCATCTA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * *
113345 ATCTCTTACCCTGGTCATGGGGTAGATTGAAGACATCATCTA
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
* * * *
113387 ATCTCTTACCCCAATCTTGAGGTAGATTGAAG
1 ATCTCTTACCCCGATCATGGGGCAGATTGAAG
113419 CCACAATCCA
Statistics
Matches: 708, Mismatches: 153, Indels: 146
0.70 0.15 0.14
Matches are distributed among these distances:
36 1 0.00
37 31 0.04
38 271 0.38
39 66 0.09
40 234 0.33
41 27 0.04
42 76 0.11
43 2 0.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
ATCTCTTACCCCGATCATGGGGCAGATTGAAGACATCATCTA
Done.