Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01012815.1 Kokia drynarioides strain JFW-HI SEQ_127828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3105
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Found at i:406 original size:216 final size:216
Alignment explanation
Indices: 1--3105 Score: 3867
Period size: 216 Copynumber: 14.4 Consensus size: 216
* * * * *
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* **
66 AGAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
** ** * *
131 ATGACAAACTATTTAGACCAAATGAAACGATTTCCAAAGGATGGAATATTC-AGAAAATTGCTCA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCA
*
195 GAGGAATGGATCTTGTTGAATA
195 AAGGAATGGATCTTGTTGAATA
* * *
217 CTTTAGGGAGCTGAAGTTAAAAAATAACTCATAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * *** *
282 ACGAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTCAAAGTGTAAAACTTGTTTGCAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * *
347 ATGACAAATTATTTAAACCAAATGATGCGATTTCCCGTGCACGAAATGTTCAAAAAATTGCTCGA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
* *
412 AGAAATGGAT-TGTCTTGAATA
196 AGGAATGGATCT-TGTTGAATA
* ** * * * * *
433 CTTGAAAG-ACTCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTTGAAAGTTCGTACAA-
1 CTTTAGGGAAC-CGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* *
496 AGACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCATTCAAAGACAAAAACTTGTTTACA
65 A-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
*
561 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTC
129 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
* * * *
626 GAAGCAATGGATCATCTTGAATA
194 AAAGGAATGGATCTTGTTGAATA
* * * * * * * * * *
649 CTTGAAGGACCCAAAGTTATAAAAGAACTTGTAAAAGTTTAACAAGTTTGAAAGTTCGTACAA-A
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* *
713 GACAAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACAAAAACTTGTTTACAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * ** * * *
778 AATGACAAAGCCATTTAGACCAAATGAAGCGATTTTCCAAGTATGGAAAATTTGAAAAATTGGTT
130 AATGACAAA-CTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
843 AAAGGAATGGATCTTGTTGAATA
194 AAAGGAATGGATCTTGTTGAATA
* *
866 CTTTAGGGAACTGAAGTTAAAAAATAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * * **
931 ACAAAGAGGGAAGCAATTTTCACGTAAATAAGTTTTTAATTCAAAGATAAAAACTTGTTTACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
*
996 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCAA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
1061 AGGAATGGATCTTGTTGAATA
196 AGGAATGGATCTTGTTGAATA
* * * * *
1082 CTTTAGGGAACC-ACAGTTAAAAAGTAACTCGTAAAAGTTTCACAGGTTGGAAAGTTCGTACAA-
1 CTTTAGGGAACCGA-AGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* * * *
1145 ATACAAAGAGAGAAATAATTCTCACATAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCA
65 A-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * * * * *
1210 AAATGACAAACTAATTAGGCCAAATGATGCGATCTCCCGAGCATGAAATGTTTGGAAAATTGGTC
129 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC
* * * *
1275 GAAA-TAATGGATCGTCTTGAATT
194 -AAAGGAATGGATCTTGTTGAATA
* * * * * * * * *
1298 CTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAATTCGAAAGTTCTTCCAGGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
**
1363 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
** * *
1428 ATGACAAACTATTTAGACCAAATGAAACGATTTCCC-ATGGATGGAATATTCGAAAAATTGCTCA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGA-GCATGGAATGTTCGAAAAATTGCTCA
1492 AAGGAATGGATCTTGTTGAATA
195 AAGGAATGGATCTTGTTGAATA
* * * *
1514 CTTTAGGGAACTGAAGTTAAAAGATAACTCGTAAAAGTTTGACAAGTTCTAAAGTTTG-CCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
** *
1578 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGTGCAAAAATTGTTTACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* *
1643 ATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCTA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
1708 AGGAATGGATCTTGTTGAATA
196 AGGAATGGATCTTGTTGAATA
* * * *
1729 CTTTAGGGAAACGAAATTAAAAAATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAA-A
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* *
1793 GGCAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * **
1858 AATGATAAACTATTTTGACCAAATGATGCGATTTCCCAAGTATGAAAAATTCGAAAAATTGCTCA
130 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCA
1923 AAGGAATGGATCTTGTTGAATA
195 AAGGAATGGATCTTGTTGAATA
* * * * *
1945 GTTTAGGGAACTGAAGTTAAAGAATAACTCGTGAATGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * * * * ** **
2010 GCATAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTTAGAGTGCAAAACTTGTTTGGAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * * *
2075 CTGACATATTATTTAAACCAAATGATACGATTTCTCGAGCATGGAATGTT-TAGAAAATTGCTCT
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCA
2139 AAGGAATGGATCTTGTTGAATA
195 AAGGAATGGATCTTGTTGAATA
* * * *
2161 CTTTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAATTTCGAAAGTTCTTACAA-A
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * * *
2225 GAC-AA-AGAGAAACAATTCTCACGTAAATAAGTTTTGAATTCATAGACAAAAACTTGGTTACAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
*
2288 AATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTCA
130 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCA
2353 AAGGAATGGATCTTGTTGAATA
195 AAGGAATGGATCTTGTTGAATA
* * * *
2375 CTTTAGGGAACCGAAGTTAAAAAGTAACTCGTAAAAGTTTGACAAGTTTGAAAGTTTGTACAA-A
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
** * *
2439 GACAAAGAGAGAAACAATTCTCGTGTAAATAAGTTTTTAATTCAAAGACCAAAACCTGTTTGCAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* ** * * ** *
2504 AATGACAAACTAATTAGGTCAAATGATGCGATCTCCCGAGCATGAAATGTTTAAAAAATTGGTCG
130 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTC-
* * *
2569 AAA-GAATGGATCGTCTAGAATA
194 AAAGGAATGGATCTTGTTGAATA
* * * * * * *
2591 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAGGTTTGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * **
2656 AGAAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
** * * ** * * *
2721 ATGACAAACTATTTAGACCAAATGACACTATTTCCCAAGGGTGGAATATTCGGAAAATTACTCAA
131 ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
2786 AGGAATGGATCTTGTTGAATA
196 AGGAATGGATCTTGTTGAATA
** * *
2807 CTTTAGGGAACCGAAGTTAAAACGTAACTCGTAAAAGTTTGAC-AGTTCGAAAGTTTGTACAA-A
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* *
2870 GACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTGCAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * * *
2935 AATGACAAACTAATTAGGCCAAATGATGCGATCTCTCGAGCATGAAATGATT-AAAAAATTGGTC
130 AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTC
* * *
2999 GAAA-GAATAGATCGTCTTGAATA
194 -AAAGGAATGGATCTTGTTGAATA
* * * * *
3022 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
3087 ACAAAGAGAGAAACAATTC
66 ACAAAGAGAGAAACAATTC
Statistics
Matches: 2473, Mismatches: 384, Indels: 64
0.85 0.13 0.02
Matches are distributed among these distances:
214 186 0.08
215 383 0.15
216 1706 0.69
217 197 0.08
218 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (216 bp):
CTTTAGGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
ATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAA
AGGAATGGATCTTGTTGAATA
Found at i:1824 original size:647 final size:648
Alignment explanation
Indices: 1--3105 Score: 4204
Period size: 647 Copynumber: 4.8 Consensus size: 648
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
*
66 AGAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
*
131 ATGACAAACTATTTAGACCAAATGAAACGATTTCCAAAGGATGGAATATTC-AGAAAATTGCTCA
131 ATGACAAACTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGA-AAAATTGCTCA
* * *
195 GAGGAATGGATCTTGTTGAATACTTTAGGGAGCTGAAGTTAAAAAATAACTCATAAAAGTTTGAC
195 AAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGAC
* * *
260 AAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTCACGTAAATAATTTTTTAATTCA
260 AAGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * * * *
325 AAGTGTAAAACTTGTTTGCAAAATGACAAATTATTTAAACCAAATGATGCGATTTCCCGTGCACG
325 AAGTGCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * * ** ** *
390 AAATGTTCAAAAAATTGCTCGAAGAAATGGAT-TGTCTTGAATACTTGAAAGACTCGAAGTTATA
390 GAATGTTCGAAAAATTGCTCAAAGGAATGGATCT-TGTTGAATACTTTAGGGAAACGAAGTTAAA
* *
454 AAAGAACTA-GTAAAAGTTTGACAAGTTTGAAAGTTCGTACAAAGACAAAGAGAGAAACAATTCT
454 AAATAAC-ACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGAGAGAAACAATTCT
* *
518 CACGTAAATAAGTTTTTCATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
518 CACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTAATTAGACCA
* * *
583 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCG-AAGCAATGGATCATCTTGAA
583 AATGATGCGATCTCCCGAGCATGAAATGTTCGAAAAATTGGTCGAAAG-AATGGATCGTCTTGAA
647 TA
647 TA
* * * * * * *
649 CTTGAAGGACCCAAAGTTATAAAAGAACTTGTAAAAGTTTAACAAGTTTGAAAGTTCGTACAA-A
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* * **
713 GACAAAGAGAGAAACAATTCTCACGTAAATAAATTTTTAATTCAAAGACAAAAACTTGTTTACAA
66 -ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAA
* * * * * * * *
778 AATGACAAAGCCATTTAGACCAAATGAAGCGATTTTCCAAGTATGGAAAATTTGAAAAATTGGTT
130 AATGACAAA-CTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGAAAAATTGCTC
*
843 AAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTGAAAGTTTGA
194 AAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGA
* * * *
908 CAAGTTCGAAAGTTCGTCCAAGAACAAAGAGGGAAGCAATTTTCACGTAAATAAGTTTTTAATTC
259 CAAGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
973 AAAGAT--AAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
324 AAAG-TGCAAAAA-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* *
1036 ATGGAATGTTCGGAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGG-AACCACAGTT
387 ATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGA-AGTT
* * * * * * *
1100 AAAAAGTAACTCGTAAAAGTTTCACAGGTTGGAAAGTTCGTACAAATACAAAGAGAGAAATAATT
451 AAAAAATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGAGAGAAACAATT
* * * * *
1165 CTCACATAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTGCAAAATGACAAACTAATTAGGC
516 CTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTAATTAGAC
* * *
1230 CAAATGATGCGATCTCCCGAGCATGAAATGTTTGGAAAATTGGTCGAAATAATGGATCGTCTTGA
581 CAAATGATGCGATCTCCCGAGCATGAAATGTTCGAAAAATTGGTCGAAAGAATGGATCGTCTTGA
*
1295 ATT
646 ATA
* * * *
1298 CTTTAAGGATCCGATGTTATAAAAGAACTAGTAAAAGTTTGACAAATTCGAAAGTTCTTCCAGGA
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
1363 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
*
1428 ATGACAAACTATTTAGACCAAATGAAACGATTTCCCATGGATGGAATATTCGAAAAATTGCTCAA
131 ATGACAAACTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGAAAAATTGCTCAA
*
1493 AGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAGATAACTCGTAAAAGTTTGACA
196 AGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACA
*
1558 AGTTCTAAAGTTTG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
261 AGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
*
1622 AGTGCAAAAATTGTTTACAAAATGACAAATTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
326 AGTGCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
* *
1687 AATGTTCGAAAAATTGCTCTAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGAAATTAAAAA
391 AATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGAAGTTAAAAA
*
1752 ATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGGCAAAGAGAGAAACAATTCTCAC
456 ATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGAGAGAAACAATTCTCAC
* * *
1817 GTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGATAAACTATTTTGACCAAAT
521 GTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTAATTAGACCAAAT
* * * ** * * *
1882 GATGCGATTTCCCAAGTATGAAAAATTCGAAAAATTGCTC-AAAGGAATGGATCTTGTTGAATA
586 GATGCGATCTCCCGAGCATGAAATGTTCGAAAAATTGGTCGAAA-GAATGGATCGTCTTGAATA
* * * * * * * *
1945 GTTTAGGGAACTGAAGTTA-AAGAATAACTCGTGAATGTTTGACAAGTTCGAAAGTTCGTCCAAG
1 CTTTAAGGATCCGAAGTTATAA-AAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
* * * * * ** ** **
2009 AGCATAGAGAGAAACAATTCTCGCGTAAATAAGTTTTTAATTTAGAGTGCAAAACTTGTTTGGAA
65 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAA
* * * * * * * * * *
2074 ACTGACATATTATTTAAACCAAATGATACGATTTCTCGAGCATGGAATGTT-TAGAAAATTGCTC
130 AATGACAAACTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGA-AAAATTGCTC
* * *
2138 TAAGGAATGGATCTTGTTGAATACTTTAAGGAACCGAAGTTAAAAAATAACTCGTAAAAGTTTGA
194 AAAGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGA
* * *
2203 CAATTTCGAAAGTTCT-TACAA-AGAC-AA-AGAGAAACAATTCTCACGTAAATAAGTTTTGAAT
259 CAAGTTCGAAAGTT-TGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * *
2264 TCATAG-ACAAAAACTTGGTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAG
322 TCAAAGTGCAAAAA-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAG
*
2328 CATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTT
386 CATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGAAGTT
* * * *
2393 AAAAAGTAACTCGTAAAAGTTTGACAAGTTTGAAAGTTTGTACAAAGACAAAGAGAGAAACAATT
451 AAAAAATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGAGAGAAACAATT
** * * * **
2458 CTCGTGTAAATAAGTTTTTAATTCAAAGACCAAAACCTGTTTGCAAAATGACAAACTAATTAGGT
516 CTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTAATTAGAC
** *
2523 CAAATGATGCGATCTCCCGAGCATGAAATGTTTAAAAAATTGGTCGAAAGAATGGATCGTCTAGA
581 CAAATGATGCGATCTCCCGAGCATGAAATGTTCGAAAAATTGGTCGAAAGAATGGATCGTCTTGA
2588 ATA
646 ATA
* *
2591 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAGGTTTGAAAGTTCGTCCAAGA
1 CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
* *
2656 AGAAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
66 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
* * * * *
2721 ATGACAAACTATTTAGACCAAATGACACTATTTCCCAAGGGTGGAATATTCGGAAAATTACTCAA
131 ATGACAAACTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGAAAAATTGCTCAA
* **
2786 AGGAATGGATCTTGTTGAATACTTTAGGGAACCGAAGTTAAAACGTAACTCGTAAAAGTTTGAC-
196 AGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACA
* *
2850 AGTTCGAAAGTTTGTACAA-AGACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA
261 AGTTCGAAAGTTTGTCCAAGA-ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
** * * * * * *
2914 AAGACCAAAACTTGTTTGCAAAATGACAAACTAATTAGGCCAAATGATGCGATCTCTCGAGCATG
325 AAGTGCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* * * * * * * ** *
2979 AAATGATT-AAAAAATTGGTCGAAA-GAATAGATCGTCTTGAATACTTTAAGGATCCGAAGTTAT
390 GAATG-TTCGAAAAATTGCTC-AAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGAAGTTAA
* *
3042 AAAAGAACTA-GTAAAAGTTTGACAAGTTCGAAAGTTCGT-CCAAGAACAAAGAGAGAAACAATT
453 AAAATAAC-ACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAG-ACAAAGAGAGAAACAATT
3105 C
516 C
Statistics
Matches: 2146, Mismatches: 280, Indels: 63
0.86 0.11 0.03
Matches are distributed among these distances:
644 1 0.00
645 26 0.01
646 542 0.25
647 739 0.34
648 278 0.13
649 554 0.26
650 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (648 bp):
CTTTAAGGATCCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGA
ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGGATACAAA
ATGACAAACTATTTAGACCAAATGAAACGATTTCCCAAGGATGGAATATTCGAAAAATTGCTCAA
AGGAATGGATCTTGTTGAATACTTTAGGGAACTGAAGTTAAAAAATAACTCGTAAAAGTTTGACA
AGTTCGAAAGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
AGTGCAAAAATTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGG
AATGTTCGAAAAATTGCTCAAAGGAATGGATCTTGTTGAATACTTTAGGGAAACGAAGTTAAAAA
ATAACACGTAAAAGTTTGACAAGTTCGAAAGTTCGTACAAAGACAAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTAATTAGACCAAAT
GATGCGATCTCCCGAGCATGAAATGTTCGAAAAATTGGTCGAAAGAATGGATCGTCTTGAATA
Done.