Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01012816.1 Kokia drynarioides strain JFW-HI SEQ_127829, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3652
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31

Warning! 37 characters in sequence are not A, C, G, or T


Found at i:1042 original size:4 final size:4

Alignment explanation


    Indices: 1035--1080  Score: 67
    Period size: 4  Copynumber: 11.8  Consensus size: 4

       1025 TGGACAGAAG

                                                          *   *       
       1035 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAG- AAGA AGGA GAGA AAG
          1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAG

       1081 GTAGTGTGTT


Statistics
Matches: 37,  Mismatches: 4, Indels: 2
        0.86            0.09        0.05

Matches are distributed among these distances:
   3    3  0.08
   4   34  0.92

ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00


Consensus pattern (4 bp):   
AAGA

Found at i:2958 original size:37 final size:37

Alignment explanation


    Indices: 2908--2981  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       2898 TGGGTAAAAA

                                                 
       2908 AATTAAGTTTCAAATTATATTTTTAATATTTTAATTC
          1 AATTAAGTTTCAAATTATATTTTTAATATTTTAATTC

                                                 
       2945 AATTAAGTTTCAAATTATATTTTTAATATTTTAATTC
          1 AATTAAGTTTCAAATTATATTTTTAATATTTTAATTC

       2982 GAGACTGTAA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54


Consensus pattern (37 bp):   
AATTAAGTTTCAAATTATATTTTTAATATTTTAATTC
Done.