genome.fa.s12818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012818.1 Kokia drynarioides strain JFW-HI SEQ_127831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  241526

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--31	2	15.5	2	100	0	62	51	0	0	48	1.00
12693--12739	19	2.5	19	100	0	94	40	4	25	29	1.75
13348--13387	21	1.9	21	85	10	55	30	10	5	55	1.54
19415--19878	40	11.7	42	72	14	230	27	17	23	31	1.97
19410--19862	77	5.7	78	80	4	421	27	17	23	31	1.97
19435--19866	155	2.8	152	81	5	454	27	18	22	31	1.97
20204--20424	49	4.5	48	74	6	176	21	29	14	34	1.93
20334--20446	48	2.3	48	83	4	138	23	27	17	31	1.97
24227--24272	23	2.0	23	91	0	74	43	21	10	23	1.84
24234--24272	12	3.3	12	78	7	53	43	23	12	20	1.86
28184--28243	28	2.1	28	87	0	84	23	21	20	35	1.96
28204--28243	14	2.9	14	80	0	53	22	20	20	37	1.94
28232--28282	21	2.4	21	100	0	102	23	19	23	33	1.97
28773--28837	27	2.4	27	80	14	73	29	0	29	41	1.56
29617--29818	49	4.1	49	73	3	165	18	30	16	34	1.93
29728--29866	48	2.9	47	79	4	143	19	28	17	33	1.95
29728--29865	49	2.8	48	81	3	143	19	28	18	33	1.95
32037--32110	30	2.5	29	77	18	80	39	0	8	52	1.31
32090--32142	22	2.5	22	81	9	65	54	0	0	45	0.99
33824--33856	17	1.9	17	88	11	50	18	33	15	33	1.92
39845--39921	34	2.3	34	80	14	97	24	14	12	48	1.79
47970--48040	36	2.0	36	100	0	142	42	14	8	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49507--49551	20	2.2	20	84	11	56	55	2	42	0	1.12
56757--56803	17	2.7	17	86	3	58	19	17	14	48	1.81
57126--57155	2	15.0	2	92	0	51	46	0	0	53	1.00
57861--57929	26	2.7	26	77	11	70	24	21	21	31	1.98
70648--70747	21	4.8	21	78	14	109	35	21	14	30	1.92
70649--70747	42	2.4	42	91	0	171	35	21	14	29	1.92
70649--70761	42	2.7	41	83	5	145	33	22	13	30	1.92
82350--82410	25	2.4	25	100	0	122	36	22	6	34	1.81
85036--85065	16	1.9	16	93	6	53	60	0	16	23	1.36
88653--88706	24	2.2	24	100	0	108	20	33	24	22	1.97
90976--91006	15	2.1	15	100	0	62	51	6	6	35	1.53
96604--96651	17	2.8	17	80	0	60	54	12	14	18	1.71
101506--101549	23	1.9	23	81	9	54	25	22	0	52	1.48
103969--103996	14	2.0	14	100	0	56	42	7	21	28	1.79
108383--108413	12	2.6	12	94	0	53	16	9	0	74	1.07
115387--115424	13	2.7	15	88	8	53	50	10	2	36	1.51
119613--119654	21	2.0	22	85	4	59	64	2	19	14	1.39
142164--142207	24	1.9	23	86	9	63	50	0	2	47	1.13
143127--143216	40	2.2	40	82	5	110	43	4	11	41	1.60
143106--143171	27	2.5	28	75	9	75	46	6	9	37	1.60
143193--143239	21	2.2	21	84	0	58	46	6	6	40	1.55
149743--149772	12	2.4	13	88	11	53	70	13	6	10	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164464--164522	21	2.8	21	78	0	64	45	30	13	10	1.76
165502--165966	233	2.0	233	97	0	885	32	14	21	31	1.93
171201--171230	14	2.1	15	93	6	53	60	0	40	0	0.97
179058--179108	18	2.7	20	79	11	54	43	0	1	54	1.11
184371--184508	37	3.8	36	85	3	177	15	18	28	36	1.92
184371--184508	74	1.9	74	86	3	197	15	18	28	36	1.92
188800--188833	8	4.2	8	96	0	59	8	0	50	41	1.34
190779--190803	5	5.0	5	100	0	50	80	0	0	20	0.72
193292--193371	38	2.1	38	83	0	97	28	6	16	48	1.70
196616--196654	13	2.9	14	80	7	53	66	0	28	5	1.12
205062--205115	24	2.4	22	85	14	67	35	24	11	29	1.90
217406--217442	17	2.2	18	80	14	51	16	13	13	56	1.67
221942--222011	33	2.0	35	89	8	108	47	12	22	17	1.81
225320--225347	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!